BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53260.1
Length=2520
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938226 jgi|Araly1|938226|scaffold_502417.1 3541 0.0
Ahg482690 jgi|Araly1|482690|fgenesh2_kg.4__1750__AT2G37040.1 2069 0.0
Ahg887428 jgi|Araly1|887428|Al_scaffold_0693_1 222 9e-57
> Ahg938226 jgi|Araly1|938226|scaffold_502417.1
Length=2195
Score = 3541 bits (1917), Expect = 0.0
Identities = 2099/2190 (96%), Gaps = 0/2190 (0%)
Strand=Plus/Plus
Query 147 ACTTCTTGAAAACCAATGGATCAAATCGAAGCAATGTTGTGCGGCGGAGGAGAGAAGACA 206
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 ACTTCTTGAAAACCAATGGATCAAATCGAAGCAATGTTGTGCGGCGGAGGAGAGAAGACG 65
Query 207 AAAGTGGCGGTTACTACGAAGACTTTGGCAGATCCATTGAATTGGGGTTTAGCAGCGGAT 266
||||||||||||||||| ||||| |||||||||| ||||| ||||||||||| ||||||
Sbjct 66 AAAGTGGCGGTTACTACTAAGACGGTGGCAGATCCGTTGAACTGGGGTTTAGCGGCGGAT 125
Query 267 CAAATGAAAGGAAGTCATTTAGATGAAGTGAAGAAGATGGTCGAAGAGTATCGTAGACCA 326
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 126 CAAATGAAAGGAAGTCATTTAGATGAAGTGAAGAAGATGGTCGAAGAGTACCGGAGACCA 185
Query 327 GTCGTGAATCTTGGCGGAGAAACACTGACGATCGGACAAGTTGCTGCCATCTCCACCGTA 386
|| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 186 GTTGTGAATCTTGGTGGAGAAACACTGACGATCGGACAAGTTGCGGCGATCTCCACCGTA 245
Query 387 GGAGGCAGCGTTAAGGTTGAGTTAGCGGAGACTTCAAGAGCCGGTGTGAAAGCTAGCAGT 446
|| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 246 GGCGGCAGCGTTAAGGTTGAGTTAGCGGAGGCTTCAAGAGCCGGTGTCAAAGCTAGCAGT 305
Query 447 GATTGGGTTATGGAGAGCATGAACAAAGGTACTGACAGTTACGGAGTCACCACCGGCTTT 506
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 306 GATTGGGTTATGGAGAGTATGAACAAAGGCACTGACAGTTACGGTGTCACCACCGGCTTT 365
Query 507 GGTGCTACTTCTCACCGGAGAACCAAAAACGGCACCGCATTACAAACAGAACTCATTAGA 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GGTGCTACTTCTCACCGGAGAACCAAAAACGGCACCGCATTACAAACAGAACTCATTAGA 425
Query 567 TTTTTGAACGCCGGAATATTCGGAAACACGAAGGAGACATGTCACACACTGCCGCAATCC 626
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 426 TTTTTGAACGCCGGAATATTCGGAAACACGAAGGAGACATGTCACACGCTGCCGCAATCC 485
Query 627 GCCACAAGAGCCGCCATGCTCGTCAGAGTCAACACTCTTCTCCAAGGATACTCCGGGATC 686
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 486 GCCACAAGAGCCGCCATGCTCGTCAGAGTCAACACTCTTCTCCAAGGATACTCCGGTATC 545
Query 687 CGATTCGAGATCCTCGAAGCGATTACAAGTCTCCTCAACCACAACATCTCTCCGTCACTA 746
||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 546 CGATTCGAGATTCTCGAAGCGATTACAAGTCTCCTCAATCACAACATCTCTCCTTCACTT 605
Query 747 CCTCTCCGTGGAACCATTACCGCCTCCGGCGATCTCGTTCCTCTCTCTTACATCGCCGGA 806
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 606 CCTCTCCGTGGAACCATAACCGCCTCCGGCGATCTCGTTCCTCTCTCCTACATCGCCGGA 665
Query 807 CTTCTCACCGGCCGTCCTAATTCCAAAGCCACCGGTCCCGACGGTGAATCGCTAACCGCG 866
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 666 ATTCTAACCGGCCGTCCTAATTCCAAAGCCACCGGTCCCGCCGGTGAATCGCTAACCGCG 725
Query 867 AAAGAAGCTTTTGAGAAAGCCGGAATCAGTACTGGATTCTTCGATTTACAACCTAAGGAA 926
||||||||||| |||||||||||||||||| | |||||||||||| |||| |||||||||
Sbjct 726 AAAGAAGCTTTCGAGAAAGCCGGAATCAGTTCCGGATTCTTCGATCTACAGCCTAAGGAA 785
Query 927 GGTTTAGCTCTCGTTAATGGCACGGCGGTTGGATCTGGAATGGCGTCGATGGTTCTATTC 986
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 786 GGATTAGCTCTCGTTAATGGCACGGCGGTTGGATCTGGCATGGCGTCGATGGTTCTATTC 845
Query 987 GAAGCGAATGTCCAAGCGGTGTTAGCGGAGGTTTTATCAGCGATCTTCGCGGAGGTTATG 1046
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 846 GAAGCCAATGTTCAAGCGGTGTTAGCGGAGGTTTTATCAGCGATTTTCGCGGAGGTTATG 905
Query 1047 AGCGGGAAACCTGAGTTTACCGATCATCTGACTCATCGTTTAAAACATCATCCCGGACAA 1106
|||||||||||||| || ||||||||||||||||| ||||| || |||||||||||||||
Sbjct 906 AGCGGGAAACCTGAATTCACCGATCATCTGACTCACCGTTTGAAGCATCATCCCGGACAA 965
Query 1107 ATCGAAGCGGCGGCGATAATGGAGCACATACTCGACGGAAGCTCATACATGAAATTAGCT 1166
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 966 ATCGAAGCGGCGGCGATAATGGAACATATCCTCGACGGAAGCTCATACATGAAATTAGCT 1025
Query 1167 CAAAAGGTTCACGAGATGGATCCATTGCAGAAACCAAAACAAGATCGTTACGCTCTTCGT 1226
|||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1026 CAAAAGCTTCACGAGATGGATCCATTGCAGAAGCCGAAACAAGATCGTTACGCTCTTCGT 1085
Query 1227 ACATCTCCTCAATGGCTAGGTCCTCAAATTGAAGTAATCCGTCAAGCTACGAAATCGATA 1286
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1086 ACCTCTCCTCAATGGCTAGGACCTCAAATTGAAGTAATCCGTCAAGCTACGAAATCGATT 1145
Query 1287 GAGCGTGAAATCAACTCCGTTAACGATAATCCGTTGATCGATGTTTCGAGGAACAAGGCG 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 GAGCGTGAAATCAACTCCGTTAACGATAATCCGTTGATCGATGTTTCGAGGAACAAGGCG 1205
Query 1347 ATTCACGGTGGTAACTTCCAAGGAACACCAATCGGAGTTTCTATGGATAACACGAGATTG 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 ATTCACGGTGGTAACTTCCAAGGAACACCAATCGGAGTTTCTATGGATAACACGAGATTG 1265
Query 1407 GCGATTGCTGCGATTGGGAAGCTAATGTTTGCTCAATTCTCTGAGCTTGTTAATGATTTC 1466
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1266 GCGATTGCTGCGATTGGGAAGCTTATGTTTGCTCAATTCTCTGAGCTTGTTAATGATTTC 1325
Query 1467 TACAACAATGGACTTCCTTCGAATCTAACTGCTTCGAGTAATCCAAGTTTGGATTATGGA 1526
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1326 TACAACAATGGACTTCCTTCGAATCTAACAGCTTCGAGTAATCCAAGTTTGGATTATGGA 1385
Query 1527 TTCAAAGGAGCAGAGATTGCTATGGCTTCTTATTGTTCTGAGCTTCAATACTTGGCTAAT 1586
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1386 TTCAAAGGAGCAGAGATTGCTATGGCTTCTTATTGCTCTGAGCTTCAATACTTGGCTAAT 1445
Query 1587 CCAGTCACAAGCCATGTTCAATCAGCTGAGCAACATAATCAAGATGTGAACTCTCTTGGT 1646
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1446 CCAGTCACAAGCCATGTTCAATCAGCTGAACAACATAATCAAGATGTGAATTCTCTTGGA 1505
Query 1647 TTGATCTCGTCTCGTAAAACATCTGAAGCTGTGGATATTCTTAAGCTAATGTCAACAACG 1706
|||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 1506 TTGATCTCGTCTCGTAAAACCTCTGAAGCTGTCGACATTCTTAAGCTAATGTCAACAACG 1565
Query 1707 TTCCTTGTGGGGATATGTCAAGCTGTTGATTTGAGACATTTGGAGGAGAATCTGAGACAA 1766
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1566 TTCCTTGTGGGGATATGTCAAGCTGTGGATTTGAGACATTTGGAGGAGAATCTGAGACAG 1625
Query 1767 ACTGTGAAGAACACAGTTTCTCAAGTTGCTAAGAAAGTGTTAACCACTGGAATCAACGGT 1826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1626 ACTGTGAAGAACACAGTTTCTCAAGTTGCTAAGAAAGTGTTAACCACTGGAATCAACGGT 1685
Query 1827 GAGTTACATCCGTCAAGGTTTTGCGAGAAGGACTTGCTTAAGGTTGTTGATCGTGAGCAA 1886
||| ||||||| ||| |||| || ||||| |||||||||||||| ||||||||||| |||
Sbjct 1686 GAGCTACATCCTTCACGGTTCTGTGAGAAAGACTTGCTTAAGGTCGTTGATCGTGAACAA 1745
Query 1887 GTGTTCACGTATGTGGATGATCCTTGTAGCGCTACGTACCCGTTGATGCAGAGACTAAGA 1946
|||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| |||
Sbjct 1746 GTGTTCACGTATGTCGATGATCCGTGTAGCGCAACGTACCCATTGATGCAGAGACTGAGA 1805
Query 1947 CAAGTTATTGTTGATCACGCTTTGTCCAACGGTGAGACTGAGAAGAATGCAGTGACTTCG 2006
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 CAAGTTATCGTTGATCACGCTTTGTCCAACGGTGAGACTGAGAAGAATGCAGTGACTTCG 1865
Query 2007 ATCTTTCAAAAGATTGGAGCTTTTGAAGAGGAGCTTAAGGCTGTGCTTCCAAAGGAAGTT 2066
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1866 ATCTTTCAAAAGATTGGAGCTTTTGAAGAGGAGCTTAAGGCTGTGCTTCCAAAGGAAGTG 1925
Query 2067 GAAGCGGCTAGAGCGGCTTATGGGAATGGAACTGCGCCGATTCCTAACCGGATTAAGGAA 2126
||||| ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1926 GAAGCCGCTAGAGCGACTTATGGTAATGGTACTGCGCCGATTCCTAACCGGATTAAGGAA 1985
Query 2127 TGTAGGTCGTATCCGTTGTATAGGTTCGTGAGGGAAGAGCTTGGAACGAAGTTGTTGACT 2186
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1986 TGTAGGTCGTATCCGTTGTATAGGTTCGTGAGGGAAGAGCTCGGAACGAAGTTGTTGACT 2045
Query 2187 GGAGAAAAGGTTGTGTCTCCGGGAGAGGAGTTTGATAAGGTCTTCACTGCTATGTGTGAA 2246
|| || |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2046 GGGGAGAAGGTTGTGTCTCCCGGAGAGGAGTTTGATAAGGTCTTCACTGCAATGTGTGAA 2105
Query 2247 GGTAAACTTATTGATCCGTTGATGGATTGTCTCAAGGAATGGAACGGAGCTCCGATTCCG 2306
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2106 GGTAAAATTATTGATCCGTTGATGGATTGTCTCAAGGAATGGAACGGAGCTCCGATTCCG 2165
Query 2307 ATTTGCTAAGAGAGCATTCCTctgtttctg 2336
|||||||||||||| |||||||||||||||
Sbjct 2166 ATTTGCTAAGAGAGAATTCCTCTGTTTCTG 2195
> Ahg482690 jgi|Araly1|482690|fgenesh2_kg.4__1750__AT2G37040.1
Length=2436
Score = 2069 bits (1120), Expect = 0.0
Identities = 1784/2102 (85%), Gaps = 56/2102 (3%)
Strand=Plus/Plus
Query 267 CAAATGAAAGGAAGTCATTTAGATGAAGTGAAGAAG-ATGGTCGAAGAGTAT-CGTAGAC 324
|||||||||||||| ||||| |||||||||||| || ||||| | |||| | | || |
Sbjct 182 CAAATGAAAGGAAGCCATTTGGATGAAGTGAAG-AGAATGGTTGCTGAGTTTAGGAAG-C 239
Query 325 CAGTCGTGAATCTTGGCGGAGAAACACTGACGATCGGACAAGTTGCTGCCATCTCCACCG 384
|||| ||||||||||| || || || ||||| || |||||||| ||||| ||||| |||
Sbjct 240 CAGTGGTGAATCTTGGAGGTGAGACTCTGACCATTGGACAAGTGGCTGCGATCTCAACCA 299
Query 385 TAGG-AGGCAGCGTTAAGGTTGAGTTAG-CGGAGACTTCAAGAGCCGGTGTGAAAGCTAG 442
| || | | | || ||||| ||| | | ||||||| | |||||||||||||| || ||
Sbjct 300 TTGGTA-ACGGTGTGAAGGTGGAGCT-GTCGGAGACCGCTAGAGCCGGTGTGAATGCGAG 357
Query 443 CAGTGATTGGGTTATGGAGAGCATGAACAAAGGTACTGACAGTTACGGAGTCACCACCGG 502
|||||||||||||||||||| ||||||||||| ||||| ||||| || || || || ||
Sbjct 358 TAGTGATTGGGTTATGGAGAGTATGAACAAAGGCACTGATAGTTATGGTGTTACTACTGG 417
Query 503 CTTTGGTGCTACTTCTCACCGGAGAACCAAAAACGGCACCGCA-TTACA-AACAGAACTC 560
||||||||||||||||| ||||||||||||||||| |||| || || || || ||
Sbjct 418 TTTTGGTGCTACTTCTCATCGGAGAACCAAAAACGGTGTCGCACTT-CAGAA-GGAGCTT 475
Query 561 ATTAGATT-TTTGAACGCCGGAATATTCGGAAACACGAAGGAGACATGTCACACACTGCC 619
|||||||| || ||||||||||||||||||| |||||| || ||| | |||||| ||||
Sbjct 476 ATTAGATTCCTT-AACGCCGGAATATTCGGAAGCACGAAAGAAACAAGCCACACATTGCC 534
Query 620 GCAATCCGCCACAAGAGCCGCCATGCTCGTCA-GAGTCAACACTCTTCTCCAAGGATACT 678
|| ||||||||||||||||||||||| || | || |||||||||| |||||||||| |
Sbjct 535 ACACTCCGCCACAAGAGCCGCCATGCTTGT-ACGAATCAACACTCTCCTCCAAGGATTTT 593
Query 679 CCGGGATCCGATTCGAGATCCTCGAAGCGATTACAAGTCTCCTCAACCACAACATCTCTC 738
|||| ||||| |||||||| |||||||| || || ||| |||||||| |||||||| |||
Sbjct 594 CCGGTATCCGCTTCGAGATTCTCGAAGCAATCACCAGTTTCCTCAACAACAACATCACTC 653
Query 739 CGTCACTACCTCTCCGTGGAACCATTACCGCCTCCGGCGATCTCGTTCCTCTCTCTTACA 798
| || || || ||||| || || || ||||||||||| ||||||||||||||||||||||
Sbjct 654 CATCTCTCCCACTCCGCGGTACAATCACCGCCTCCGGAGATCTCGTTCCTCTCTCTTACA 713
Query 799 TCGCCGGACTTCTCACCGGCCGTCCTAATTCCAAAGCCACCGGTCCCGACGGTGAATCGC 858
|||||||| |||| ||||||||||| ||||||||||| ||||||||| |||||||| |
Sbjct 714 TCGCCGGAATTCTAACCGGCCGTCCCAATTCCAAAGCTACCGGTCCCAACGGTGAAGCTT 773
Query 859 TAACCGC-GAAAGAAGCTTTTGAGAA--AGCCGGAATCAG-TACTGGATTCTTCGATTTA 914
||||||| | ||||||| || | || ||| |||||||| | | |||||||||||| |
Sbjct 774 TAACCGCTG-AAGAAGC-CTTCA-AATTAGCTGGAATCAGCT-CCGGATTCTTCGATCTC 829
Query 915 CAACCTAAGGAAGGTTTAGCTCTCGTTAATGGCACGGCGGTTGGATCTGGAATGGCGTCG 974
|| |||||||||||| | || || || |||||||||||||||||||||||||||||||||
Sbjct 830 CAGCCTAAGGAAGGTCTCGCGCTTGTCAATGGCACGGCGGTTGGATCTGGAATGGCGTCG 889
Query 975 ATGGT-TCTATTCGAAGCGAATGTCCAAGCGGTGTTAGCGGAGGTTTTATCAGCGATCTT 1033
||||| | |||||||| ||||||| | | || || || ||| |||| || ||| | ||
Sbjct 890 ATGGTGT-TATTCGAAACGAATGTTCTCTCTGTTTTGGCTGAGATTTTGTCGGCGGTTTT 948
Query 1034 CGCGGAGGTTATGAGCGGGAAACCTGAGTTTACCGATCATCTGACTCATC-GTTTAAAAC 1092
||| ||||| ||||| || || ||||| || ||||||||||| ||||| | | | ||||
Sbjct 949 CGCAGAGGTGATGAGTGGTAAGCCTGAATTCACCGATCATCTCACTCA-CAGACTCAAAC 1007
Query 1093 ATCATCCCGGACAAATCGAAGCGGCGGCGATAATGGAGCACATACTCGACGGAAGCTCAT 1152
|||| ||||| |||||||||||||||||||||||||| || || |||||||||||||| |
Sbjct 1008 ATCACCCCGGTCAAATCGAAGCGGCGGCGATAATGGAACATATCCTCGACGGAAGCTCGT 1067
Query 1153 ACATGAAATTAGCTCAAAAGGTTCACGAGATGGATCCATTGCAGAAACCAAAACAAGATC 1212
|||||||||||||||| ||| ||||||| |||||||| || |||||||||||||||||||
Sbjct 1068 ACATGAAATTAGCTCAGAAGCTTCACGAAATGGATCCGTTACAGAAACCAAAACAAGATC 1127
Query 1213 GTTACGCTCTTCGTACATCTCCTCAATGGCTAGGTCCTCAAATTGAAGTAATCCGTCAAG 1272
|||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| | |
Sbjct 1128 GTTACGCTCTTCGTACTTCTCCTCAATGGTTAGGTCCTCAAATCGAAGTAATCCGTTACG 1187
Query 1273 CTACGAAATCGATAGAGCGTGAAATCAACTCCGTTAACGATAATCCGTTGATCGATGTTT 1332
| ||||||||||| |||||||| || |||||||| ||||||||||||||||||||||| |
Sbjct 1188 CAACGAAATCGATCGAGCGTGAGATTAACTCCGTCAACGATAATCCGTTGATCGATGTAT 1247
Query 1333 CGAGGAACAAGGCGATTCACGGTGGTAACTTCCAAGGAACACCAATCGGAGTTTCTATGG 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1248 CGAGGAACAAGGCGATTCACGGTGGTAACTTCCAAGGAACACCAATCGGAGTTTCAATGG 1307
Query 1393 ATAACACGAGATTGGCGATTGCTGCGATTGGGAAGCTAATGTTTGCTCAATTCTCTGAGC 1452
|||||||||||||||||||||| |||||||| || || ||||||||||||||||| ||||
Sbjct 1308 ATAACACGAGATTGGCGATTGCAGCGATTGGTAAACTCATGTTTGCTCAATTCTCAGAGC 1367
Query 1453 TTGTTAATGATTTCTACAACAATGGACTT-CCTTCGAATCTAACTGCTTCGAGTAATCCA 1511
|||| |||||||||||||||||||| || |||||||||||||| || ||||| ||||||
Sbjct 1368 TTGTGAATGATTTCTACAACAATGGT-TTACCTTCGAATCTAACCGCATCGAGGAATCCA 1426
Query 1512 AGTTTGGATTATGGATTCAAAGGAGCAGAGATTGCTATGGCTTCTTATTGTTCTGAGCTT 1571
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 1427 AGTTTGGATTATGGATTCAAAGGAGCTGAGATTGCAATGGCTTCTTATTGTTCAGAGCTT 1486
Query 1572 CAATACTTGGCTAATCCAGTCACAAGCCATGTTCAATCAGCTGAGCAACATAATCAAGAT 1631
|||||||| |||||||| || || ||||||||||||||||| ||||||||||| ||||||
Sbjct 1487 CAATACTTAGCTAATCCTGTGACTAGCCATGTTCAATCAGCAGAGCAACATAACCAAGAT 1546
Query 1632 GTGAACTCTCTTGGTT-TGATCTCGTCTCGTAAAACATCTGAAGCTGTGGATATTCTTAA 1690
||||||||| |||| | ||||| ||||| ||||| ||||||||||| |||||||| ||
Sbjct 1547 GTGAACTCT-TTGGGACTAATCTCATCTCGCAAAACTTCTGAAGCTGTTGATATTCTCAA 1605
Query 1691 GCTAATGTCAACAACGTTCCTTGTGGGGATATGTCAAGCTGTTGATTTGAGACATTTGGA 1750
||| ||||||||||||||||| || | ||| ||||||||||| |||||||||||||||||
Sbjct 1606 GCTTATGTCAACAACGTTCCTCGTTGCGATTTGTCAAGCTGTGGATTTGAGACATTTGGA 1665
Query 1751 GGAGAATCTGAGACAAACTGTGAAGAACACAGTTTCTCAAGTTGCTAAGAAAGTG-TTAA 1809
||||||||||| ||| |||||||||||||| ||||||||||| || |||||||| |||
Sbjct 1666 GGAGAATCTGAAACAGACTGTGAAGAACACTGTTTCTCAAGTGGCCAAGAAAGTTCTTA- 1724
Query 1810 CCACTGGAATCAACGGTGAG-TTACATCCGTCAAGGTTTTGCGAGAAGGACTTGCTTAAG 1868
| ||||| |||| |||||| || ||||| || | || ||||||||||| || || ||
Sbjct 1725 CTACTGGTGTCAATGGTGAGCTT-CATCCTTCTCGCTTCTGCGAGAAGGATTTACTCAAA 1783
Query 1869 GTTGTTGATCGTGAGCAAGTGTTCACGTATGTGGATGATCCTTGTAGCGCTACGTACCCG 1928
|| ||||| ||||| ||||| | ||| || | |||||||||||||||||| |||||||||
Sbjct 1784 GTCGTTGACCGTGAACAAGTCTACACATACGCGGATGATCCTTGTAGCGCAACGTACCCG 1843
Query 1929 TTGATGCAGA-GACTAAGACAAGTTATTGTTGATCACGCTTTG-TCCAACGGTGAGACTG 1986
||||| |||| | |||||||||||||| |||||||| |||||| || || ||||||| ||
Sbjct 1844 TTGATTCAGAAG-CTAAGACAAGTTATAGTTGATCATGCTTTGATC-AATGGTGAGAGTG 1901
Query 1987 AGAAGAATGCAGTGACTTCGATCTTTCAAAAGATTGGAGCTTTTGAAGAGGAGCTTAAGG 2046
||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||| |
Sbjct 1902 AGAAGAATGCAGTGACTTCAATCTTCCATAAGATTGGAGCTTTTGAGGAGGAGCTTAAAG 1961
Query 2047 CTGTGCTTCC-AAAGGAAGTTGAAGCGGCTAGAGCGGCTTATGGGAATGGAAC-TGC-GC 2103
| ||||| || |||| |||| || || || |||||||| || | || ||||| | | ||
Sbjct 1962 CGGTGCTACCGAAAG-AAGTGGAGGCAGCAAGAGCGGCGTACGACAACGGAACAT-CAGC 2019
Query 2104 CGATTCCTAACCGGATTAAGGAATGTAGGTCGTATCCGTTGTATAGGTTCGTGAGGGAAG 2163
|| || ||| |||| |||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 2020 T-ATCCCGAACAGGATCAAGGAATGTAGGTCGTATCCTTTGTATAGATTCGTGAGGGAGG 2078
Query 2164 AGCTTGGAAC-GAAG-TTGTTGACTGGAGA-AAAGGTTGTG-TCTCCGGGAGAGGAGTTT 2219
|||||||||| || | || ||||| ||||| |||| | | || || ||||| ||||||
Sbjct 2079 AGCTTGGAACAGA-GCTT-TTGACCGGAGAGAAAG-T-GACATCGCCCGGAGAAGAGTTT 2134
Query 2220 GATAAGGTCTTCACTGCTATGTGTGAAGGTAAACTTATTGATCCGTTGATGGATTGTCTC 2279
|||||||| ||||| || || |||||||||||| | ||||||||| ||||||| ||||||
Sbjct 2135 GATAAGGTGTTCACGGCGATTTGTGAAGGTAAAATCATTGATCCGATGATGGAATGTCTC 2194
Query 2280 AAGGAATGGAACGGAGCTCCGATTCCGATTTGCTAAGAG-AGCATTCCTctgtttctgtt 2338
|| || |||||||||||||| ||||| || || |||||| | | |||||||||| | ||
Sbjct 2195 AACGAGTGGAACGGAGCTCCCATTCCTATATGTTAAGAGTAA-AGTCCTCTGTTTTTTTT 2253
Query 2339 ct 2340
||
Sbjct 2254 CT 2255
> Ahg887428 jgi|Araly1|887428|Al_scaffold_0693_1
Length=663
Score = 222 bits (120), Expect = 9e-57
Identities = 165/187 (88%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 1619 ACATAATCAAGATGTGAACTCTCTT-GGTTTGATCTCGTCTCGTAAAACATCTGAAGCTG 1677
|||||| ||||||||||||||| || || | ||||| ||||| ||||| ||||||||||
Sbjct 3 ACATAACCAAGATGTGAACTCT-TTGGGACTAATCTCATCTCGCAAAACTTCTGAAGCTG 61
Query 1678 TGGATATTCTTAAGCTAATGTCAACAACGTTCCTTGTGGGGATATGTCAAGCTGTTGATT 1737
| |||||||| ||||| ||||||||||||||||| || | ||| ||||||||||| ||||
Sbjct 62 TTGATATTCTCAAGCTTATGTCAACAACGTTCCTCGTTGCGATTTGTCAAGCTGTGGATT 121
Query 1738 TGAGACATTTGGAGGAGAATCTGAGACAAACTGTGAAGAACACAGTTTCTCAAGTTGCTA 1797
|||||||||||||||||||||||| ||| |||||||||||||| ||||||||||| || |
Sbjct 122 TGAGACATTTGGAGGAGAATCTGAAACAGACTGTGAAGAACACTGTTTCTCAAGTGGCCA 181
Query 1798 AGAAAGT 1804
|||||||
Sbjct 182 AGAAAGT 188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94997071030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5