BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53270.1
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323872 jgi|Araly1|323872|fgenesh1_pm.C_scaffold_5001416 1242 0.0
Ahg347446 jgi|Araly1|347446|fgenesh1_pg.C_scaffold_5000838 1197 0.0
> Ahg323872 jgi|Araly1|323872|fgenesh1_pm.C_scaffold_5001416
Length=843
Score = 1242 bits (672), Expect = 0.0
Identities = 790/847 (93%), Gaps = 8/847 (1%)
Strand=Plus/Plus
Query 272 ATGAATCTTTCTCCGTTCAAGAGAGATATCGATGAGCTGATAGACGAGTTTGTGGAGGAT 331
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1 ATGAATCTTTCTCCGTTCAAGAGAGATATCGATGAGCTCATAGACGAGTTTGTGGAGGGT 60
Query 332 GATTTGACAACCTTTGCTGATATGAAGAGTGTCTGGCTATCTAGAAAGTTTTCTCATATA 391
||||||||||| | ||||||||||||||| || |||| ||| ||||||||||| |||||
Sbjct 61 GATTTGACAACGTATGCTGATATGAAGAGCGTGTGGCAATCCCGAAAGTTTTCTTATATA 120
Query 392 TATGAAGCTAGTCCTAACAGCAACCTAGCCTTTTTCATGCAGTCACTATATGTTCATACC 451
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 TATGATGCTAGTCCTAACAGCAACTTAGCCTTTTTCATGCAGTCACTATATGTTCATACC 180
Query 452 ATTGGTCACATGGTTAGTATTGATTCTTTTTCACGGAGACTTGGAGGTCTTTACTGTCTC 511
|| ||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 181 ATCGGTAACATGGTTAGTATTGATTCCTTTTCACGGAGACTTGGAGGTCTCTACTGTCTC 240
Query 512 TATTGCCTTCATGAGATCCAACCCTTTAAACCCAAGTTCAGAATCTATATCTCACTTCAA 571
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 TATTGCCTTCATGAGATCCAACCCTTTAAACCCAAGTTCAGAATTTATATCTCACTTCAA 300
Query 572 GAGCTTGGGAAATTTAGGGATCTTGTAGTTGAGGCAAAAGATAAAGGTGTAGAGATAGCT 631
||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GAGCTCGGGAAATTTAGGGACCTTGTAGTTGAGGCAAAAGATAAAAGTGTAGAGATAGCT 360
Query 632 GCTGCTGTGGCaaaaaaaaTGCTTGATGAGAACATGTTAATATTTGGAGCTGTGGATG-A 690
||||||||||||||| ||||||||||| |||||||||| || ||||||||||| || | |
Sbjct 361 GCTGCTGTGGCAAAACAAATGCTTGATAAGAACATGTTTATCTTTGGAGCTGTAGAGGAA 420
Query 691 GACATCTGCAACCAAGACAA-TTCATCAATTAACCGAGCTACAGAACGCACGTGTGCGGT 749
| | | |||||||| || || || |||||||||| |||||||||||||||||||||||||
Sbjct 421 G-CTTGTGCAACCAGGA-AAGTTAATCAATTAACAGAGCTACAGAACGCACGTGTGCGGT 478
Query 750 TTGCCTATGAGAAGTTAATCTGTGACACTAGTATTAACCAATTTATTCATTTGGATATGG 809
|||||||||| | |||||||| ||||||||||||| | ||||||||||||||||||||||
Sbjct 479 TTGCCTATGATAGGTTAATCTCTGACACTAGTATTGAGCAATTTATTCATTTGGATATGG 538
Query 810 GTAAGGAAGTTGATCTGAATTCCCTAGATAAAATGTCTATAGAATATGCAGAGGCCAAGA 869
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTAAGGAAGTTAATCTGAATTCCCTAGATAAAATGTCTATAGAATATGCAGAGGCCAAGA 598
Query 870 AGCGTGCAGTCGAAGGTGCAGGAGAAATAATGGAGATTGATGACATAAAGCATATATCAG 929
|||||||| | |||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 599 AGCGTGCAATTGAAGGTGCAGGAGAGATAATGGAGATTGAGGACATAAAGCACATATCAG 658
Query 930 AAGAGAAAGAGTTGATGGGAGAGAGAATGGAGAAATTGAAAGAGGAATGGGATTCACAAA 989
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 659 AAGAGAAAGAGTTGATGGGAGAAAGAATGGAGAAACTGAAAGAGGAATGGGATTCACAAA 718
Query 990 GACTTT-ACTTTTATGAACAAACCAAGCTTGATGGTTTTACTACGACACCAAAACAGTTG 1048
|||||| | ||||||||||||||||||||||||||| ||||||||||||| ||| ||||
Sbjct 719 GACTTTCA-TTTTATGAACAAACCAAGCTTGATGGTCTTACTACGACACCGGAACTGTTG 777
Query 1049 ACAA-ATGTGGAACATGATGAAGATGATGGGTTTGATGAGCTTGATCGCTTACTTTCTCA 1107
| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 778 A-AAGATGTGGAACATGATGAAGACGATGGGTTTGATGAGCTTGATCGCTTACTTTCTCA 836
Query 1108 AAGCTAG 1114
|||||||
Sbjct 837 AAGCTAG 843
> Ahg347446 jgi|Araly1|347446|fgenesh1_pg.C_scaffold_5000838
Length=843
Score = 1197 bits (648), Expect = 0.0
Identities = 781/846 (92%), Gaps = 6/846 (1%)
Strand=Plus/Plus
Query 272 ATGAATCTTTCTCCGTTCAAGAGAGATATCGATGAGCTGATAGACGAGTTTGTGGAGGAT 331
|||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||| |
Sbjct 1 ATGAATCTTTCTCCGTTCAAGAAAGATATCGATGAGCTCATAGACGAGTTTGCAGAGGGT 60
Query 332 GATTTGACAACCTTTGCTGATATGAAGAGTGTCTGGCTATCTAGAAAGTTTTCTCATATA 391
||||||||||| ||| |||||||||||| || |||||||| ||||||||||| || ||
Sbjct 61 GATTTGACAACGTTTATTGATATGAAGAGCGTTTGGCTATCCCGAAAGTTTTCTTATGTA 120
Query 392 TATGAAGCTAGTCCTAACAGCAACCTAGCCTTTTTCATGCAGTCACTATATGTTCATACC 451
||||| |||||||||| ||||||| | ||||||||||||||||||||||||| |||||
Sbjct 121 TATGATGCTAGTCCTACCAGCAACTTGGCCTTTTTCATGCAGTCACTATATGCACATACA 180
Query 452 ATTGGTCACATGGTTAGTATTGATTCTTTTTCACGGAGACTTGGAGGTCTTTACTGTCTC 511
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 ATCGGTCACATGGTTAGTATTGATTCTTTTTCACGAAGACTTGGAGGTCTTTACTGTCTC 240
Query 512 TATTGCCTTCATGAGATCCAACCCTTTAAACCCAAGTTCAGAATCTATATCTCACTTCAA 571
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 241 TATTGCCTTCATGAGATCCAACCCTTTAAACCCAAGTTCAGAATTTATATCTCACTTGAA 300
Query 572 GAGCTTGGGAAATTTAGGGATCTTGTAGTTGAGGCAAAAGATAAAGGTGTAGAGATAGCT 631
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 301 GAGCTCGGGAAATTTAGGGACCTTGTAGTTGAGGCAAAAGATAAAGGTGTAGAGATAGTT 360
Query 632 GCTGCTGTGGCaaaaaaaaTGCTTGATGAGAACATGTTAATATTTGGAGCTGTGGATGAG 691
||||||||||||||| ||||||||||| |||||||||| || |||||||||||||| ||
Sbjct 361 GCTGCTGTGGCAAAACAAATGCTTGATAAGAACATGTTTATCTTTGGAGCTGTGGAGGAA 420
Query 692 ACATCTGCAACCAAGACAA-TTCATCAATTAACCGAGCTACAGAACGCACGTGTGCGGTT 750
|| | |||||||| || || || |||||||||| ||||||||||||||||||||||||||
Sbjct 421 ACTTTTGCAACCATGA-AACTTAATCAATTAACAGAGCTACAGAACGCACGTGTGCGGTT 479
Query 751 TGCCTATGAGAAGTTAATCTGTGACACTAGTATTAACCAATTTATTCATTTGGATATGGG 810
||||||||| | |||||||| |||||||| |||| | |||| ||||||||||||||||||
Sbjct 480 TGCCTATGATAGGTTAATCTCTGACACTACTATTGAGCAATATATTCATTTGGATATGGG 539
Query 811 TAAGGAAGTTGATCTGAATTCCCTAGATAAAATGTCTATAGAATATGCAGAGGCCAAGAA 870
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 540 TAAGGAAGTTAATCTGAATTCCCTAGATGAAATGTCTATAGAATATGCAGAGGCCAAGAA 599
Query 871 GCGTGCAGTCGAAGGTGCAGGAGAAATAATGGAGATTGATGACATAAAGCATATATCAGA 930
||||||| ||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 600 GCGTGCAATCGAAGGTGCAGGAGAAATAATGGAGATTGAGGATATAAAGCACATATCAGA 659
Query 931 AGAGAAAGAGTTGATGGGAGAGAGAATGGAGAAATTGAAAGAGGAATGGGATTCACAAAG 990
|||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 660 AGAGAAAGAGATGATGGGAGAGAGAATGGAGAAAATGAAAGAAGAATGGGATTCACAAAG 719
Query 991 ACTTT-ACTTTTATGAACAAACCAAGCTTGATGGTTTTACTACGACACCAAAACAGTTGA 1049
|| || | ||||||||||||||||||||||||||| ||||||||||||| |||| |||||
Sbjct 720 ACATTCA-TTTTATGAACAAACCAAGCTTGATGGTCTTACTACGACACCGAAACTGTTGA 778
Query 1050 CAA-ATGTGGAACATGATGAAGATGATGGGTTTGATGAGCTTGATCGCTTACTTTCTCAA 1108
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 -AAGATGTGGAACATGATGAAGATGATGGGTTTGATGAGCTTGATCGCTTACTTTCTCAA 837
Query 1109 AGCTAG 1114
||||||
Sbjct 838 AGCTAG 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55116584515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5