BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G53280.1 Length=1689 Score E Sequences producing significant alignments: (Bits) Value Ahg938228 jgi|Araly1|938228|scaffold_502419.1 2292 0.0 Ahg323127 jgi|Araly1|323127|fgenesh1_pm.C_scaffold_5000671 1537 0.0 Ahg898261 jgi|Araly1|898261|Al_scaffold_0005_2227 150 3e-35 > Ahg938228 jgi|Araly1|938228|scaffold_502419.1 Length=1537 Score = 2292 bits (1241), Expect = 0.0 Identities = 1434/1529 (94%), Gaps = 6/1529 (0%) Strand=Plus/Plus Query 30 aaaaaCAGATAAGAAAATGTCTATCTTTCTTTGTTTCCTCTTACTTCTT-CCACTCT-CT 87 ||||||| | ||||||||||||||||| |||||||||||||||| |||| || |||| | Sbjct 5 AAAAACAAACAAGAAAATGTCTATCTTCCTTTGTTTCCTCTTAC-TCTTGCCTCTCTCCA 63 Query 88 TTAATCTTCTTGAAAAAGCTCTTACCGTCGAAAGGGAAGCTTCCTCCGGGACCTAAGGGT 147 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 64 TT-ATCTTCTTAAAAAAGCTTTTACCGTCAAAAGGGAAGCTTCCTCCGGGACCTAAGGGT 122 Query 148 CTTCCGATCATCGGTAACTTGCACCAGTTTGGAAGATTTCTTCACAAATCTCTTCACAAA 207 |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 123 CTTCCGATCATCGGAAACTTGCACCAGCTTGGAAGATTTCTTCACAAATCTCTTCACAAA 182 Query 208 ATCTCCCAAGAATATGGACCGGTGATGCTTCTCCATTTCGGGGTGGTCCCTGTGATAATT 267 ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 183 ATCTCTCAAAAATATGGACCGGTGATGCTTCTCCATTTCGGGGTAGTCCCTGTGATCATT 242 Query 268 GTCTCTTCCAAAGAAGGAGCTGAGGAAGTGCTCAAGACTCACGATCTTGAGACTTGTAGC 327 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 243 GTCTCTTCCAAAGAAGGAGCTGAGGAAGTGCTCAAGACTCATGATCTTGAGACTTGTAGC 302 Query 328 CGACCTAAGACGGTGGGGAGCGGGTTGTTTACTTACAACTTTAAAGATATTGGTTTTGCT 387 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 303 CGACCTAAGACGGTGGGGAGCGGGTTGTTTACTTACAACTTCAAAGATATTGGTTTTGCT 362 Query 388 CCGTATGGTGAGAATTGGCGAGAGATGAGGAAAATTGCGGTTTC-CGAGCTCTTTAGCCA 446 |||||||||||||| |||||||||||||||||||| |||| | | |||||||||||||| Sbjct 363 CCGTATGGTGAGAACTGGCGAGAGATGAGGAAAATCGCGG-TGCTCGAGCTCTTTAGCCC 421 Query 447 GAAGAAGCTCAAATCTTTCAGGTATATTAGAGAGGACGAGAGCCAATTGTTGGTCCGGAA 506 || ||||| || ||||||||||||||||||||||| |||| | | || |||||| | Sbjct 422 CAAAAAGCTTAAGTCTTTCAGGTATATTAGAGAGGAAGAGAACGAGTTTTTGGTCAAGCG 481 Query 507 GGTATCAAAATCTGCTCTTGAGACACCAACTTCATCAGTTAATTTGAGGAAGGTCATTTT 566 |||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 482 GGTATCAAGTTCTGCTCGTGAGACACCAACTTCATCAGTTAATTTGAGGAAAGTCATTTT 541 Query 567 TACCTTCGCGGCAAGTATCATTTGTAGACTTTCTTTTGGACAAAATTTTTGCGATTTTGT 626 |||||| |||||||| ||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 542 TACCTTTGCGGCAAGCATCATTTGTAGACTTGCTTTTGGACAAAATTTCTGCGATTTTGT 601 Query 627 CGATATGGAGACAGTGGAAGAGTTGGTGCTTGAATCGGAGACCAACCTCGGCTCCCTGGC 686 ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| |||| Sbjct 602 CGATATGGAGACAGTGGAAGAGTTGGTGCTTGAGTCGGAGTCCAACCTCGGTTCCTTGGC 661 Query 687 GTTTGCTGACTTCTTACCTGCAGGGTGGATCATAGATCGGATCTCCGGTCAGCATTCCAC 746 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 662 TTTTGCTGACTTCTTACCTGCAGGGTGGATCATAGATCGGATCTCCGGTCAGCATTCCAG 721 Query 747 GGTGATGAAAGCCTTTTCCAAACTCACCAATTTCTTTGAACTTGTGATTGATGATCATTT 806 ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 GGTGAACAAAGCCTTTGCCAAACTCACCAATTTCTTTGAACTTGTGATTGATGATCATTT 781 Query 807 GAAGAGTGGGAAAATCGAAGATCACTCAGACATCATCAGTGTCATGTTGGATATGATCAA 866 ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 782 GAAGAGTGGAAAAATCCAAGATCACTCAGACATCATCAGTGTCATGTTGGATATGATCAA 841 Query 867 CAAACCCACCGAAGTTGGTTCTTATAAAGTCACCGATGATCATCTCAAAGGACTTATGTC 926 |||||||| |||| ||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 842 TAAACCCACTAAAGTCGGTTCTTATAAAGTCACCGATGACCATCTCAAAGGAGTTATGTC 901 Query 927 GGATGTGTTTTTGGCTGGAGTGAACGCGGGTTCCATCACAATGATATGGACGATGACAGA 986 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 902 GGATGTGTTTTTGGCTGGAGTGAACGCGGGATCCATCACAATGATATGGACGATGACAGA 961 Query 987 GTTAAGTAGACATCCGAGAGTGATGAGAAAACTTCAAGAAGAGATTCGAGCAGCGCTCGG 1046 | |||| || |||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 962 GCTAAGCAGGCATCCGAGAGTGATGAAAAAACTTCAAGAAGAGATTCGAGCAACGCTCGG 1021 Query 1047 ACCCAACAAAGAGAAAATCACAGAAGAAGACCTCGAGAAAGTTGAGTACTTGAAGATGGT 1106 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | || Sbjct 1022 ACCCAACAAAGAGAAAATCACAGAAGAAGACCTAGAGAAAGTTGAGTACTTGAAGCTCGT 1081 Query 1107 GATCGAGGAAGCATTCAGATTACACCCACCGGCTCCTCTCTTACTCCCAAGACTAACAAT 1166 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1082 GATCGAGGAAGCATTCAGATTACACCCACCGGCTCCTCTCTTGCTCCCAAGACTAACAAT 1141 Query 1167 GTCCGACATCAATATTCAAGGCTACAGCATTCCAAAGAACACCATGATCCAAATCAACAC 1226 ||| |||||||| ||||||||||||| |||||| |||||||||||||||||| ||||||| Sbjct 1142 GTCGGACATCAAGATTCAAGGCTACAACATTCCCAAGAACACCATGATCCAAGTCAACAC 1201 Query 1227 GTACACAATTGGACGTGACCCCAAAAACTGGACAAAACCCGACGAGTTCATCCCCGAGAG 1286 ||||| ||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| Sbjct 1202 TTACACGATTGGACGTGATCCCAAAACCTGGACAGAACCCGACGAGTTCATCCCCGAGAG 1261 Query 1287 GTTTGTCGATAACCCTATCGAATACAAGGGTCAACATTTTGAGCTATTGCCGTTTGGAGC 1346 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 1262 GTTTGTCGATAACCCTATCGAATACAAGGGTCAGCACTTTGAGCTATTGCCGTTTGGAGC 1321 Query 1347 CGGACGTAGGGTCTGTCCCGGGATGGCCACGGGGATCACCATCGTCGAGCTTGGGCTTCT 1406 |||||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct 1322 CGGACGTAGGATCTGTCCCGGGATGGCCACGGGGATTACCATCGTCGAGCTCGGCCTTCT 1381 Query 1407 TAGCCTTCTTTACTTCTTCGATTGGAGTTTGCCCAATGGAATGACCACTAAAGATATTGA 1466 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1382 TAACCTTCTTTACTTCTTCGATTGGAGTTTGCCTAATGGAATGACCACTAAAGATATTGA 1441 Query 1467 CATGGAAGAAGACGGAGCTTTTGTCATCGCCAAGAAAGTCTCTCTTGAGCTCGTACCAAC 1526 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1442 CATGGAAGAAGACGGAGCTTTTGTCATCGCCAAGAAAATCTCTCTTGAGCTCGTACCAAC 1501 Query 1527 TCTTCATCGCTGGTGAAGCATGCAACTAT 1555 |||||||||||||||||| ||| |||||| Sbjct 1502 TCTTCATCGCTGGTGAAGAATGTAACTAT 1530 > Ahg323127 jgi|Araly1|323127|fgenesh1_pm.C_scaffold_5000671 Length=1500 Score = 1537 bits (832), Expect = 0.0 Identities = 1295/1517 (85%), Gaps = 37/1517 (2%) Strand=Plus/Plus Query 46 ATGTCTATCTTTCTTTGTTTCCTCTTACTTCTTCC-ACTCTCTTTAATCTTCTTGAAAAA 104 |||||| |||| |||||||||||||||| |||||| ||||||||| ||||||| |||| Sbjct 1 ATGTCTGTCTTCCTTTGTTTCCTCTTAC-TCTTCCTTCTCTCTTTAGTCTTCTTTAAAAG 59 Query 105 GCTCTTACCGTCGAAAGGGAAGCTTCCTCCGGGACCTAAGGGTCTTCCGATCATCGGTAA 164 ||| |||||||||||||| ||||||||||| ||||||| |||||| ||||||||||| || Sbjct 60 GCTTTTACCGTCGAAAGGAAAGCTTCCTCCTGGACCTACGGGTCTACCGATCATCGGAAA 119 Query 165 CTTGCACCAGTTTGG-AAGATTTCTTCACAAATCTCTTCACAAAATCTCCCAAGAATATG 223 ||| |||||| |||| ||| |||||||| ||||| |||||||||||||||||||||||| Sbjct 120 CTTACACCAGCTTGGAAAG-GTTCTTCACCAATCTTTTCACAAAATCTCCCAAGAATATG 178 Query 224 GACCGGTGATGCTTCTCCATTTCGGGGTGGTCCCTGTGATAATTGTCTCTTCCAAAGAAG 283 |||| ||| ||||||||||||||||||| ||||| ||||| ||||||| |||||||||| Sbjct 179 GACCAGTGGTGCTTCTCCATTTCGGGGTAGTCCCAGTGATCGTTGTCTCCTCCAAAGAAG 238 Query 284 GAGCTGAGGAAGTGCTCAAGACTCACGATCTTGAGACTTGTAGCCGACCTAAGAC-GGTG 342 ||||||||||||||||||| ||||| ||||||||||||||||||||||| || || | | Sbjct 239 GAGCTGAGGAAGTGCTCAAAACTCATGATCTTGAGACTTGTAGCCGACCGAAAACAGCCG 298 Query 343 GGGAGCGGGTTGTTTACTTACAACTTTAAAGATATTGGTTTTGCTCCGTATGGTGAGAAT 402 || || ||||||||||||||||||||||| |||||||| ||||| | ||||||| | Sbjct 299 CGG-TTGGCTTGTTTACTTACAACTTTAAAGACATTGGTTTCGCTCCCTTTGGTGAGGAC 357 Query 403 TGGCGAGAGATGAGGAAAATTGCGGTTTC-CGAGCTCTTTAGCCAGAAGAAGCTCAAATC 461 ||| |||||||||||||||| | | | |||||||||||| ||| || ||||| || Sbjct 358 TGGAGAGAGATGAGGAAAATCAC-AATGCTTGAGCTCTTTAGCTTGAAAAAACTCAAGTC 416 Query 462 TTTCAGGTATATTAGAGAGGACGAGAGCCAATTGTTGGTCCGGAAGGTATCAAAATCTGC 521 ||| ||||| |||||||| || ||||| ||||||||||| ||| |||| |||||||| Sbjct 417 TTTTAGGTACATTAGAGAAGAAGAGAGTGAATTGTTGGTCAAGAAATTATCCAAATCTGC 476 Query 522 TCTTGAGACACCAACTTCATCAGTTAATTTGAGGAAGGTCATTTTT-ACCTTCGCGGCAA 580 | ||| || ||| |||| ||||||||||||||| ||| ||||| ||||| | |||| Sbjct 477 TGACGAGTCAGAAACCTCATTAGTTAATTTGAGGAAAGTC-TTTTTCTCCTTCACAGCAA 535 Query 581 GTATCATTTGTAGACTTTCTTTTGGACA-AAATT-----TTTGCGATTTTGTCGATATGG 634 | ||||||||||||||| | |||||||| || || |||||||||| ||||||| Sbjct 536 GCATCATTTGTAGACTTGCCTTTGGACAGAACTTCCACCAGCGCGATTTTGTTGATATGG 595 Query 635 AGACAGTGGAAGAGTTGGTGCTTGAATCGGAGACCAACCTCGGCTCCCTGGCGTTTGCTG 694 ||| |||||||||||||||| |||| || ||||||||||||||| || ||||||| || | Sbjct 596 AGAGAGTGGAAGAGTTGGTGGTTGAGTCAGAGACCAACCTCGGCACCTTGGCGTTCGCCG 655 Query 695 ACTTCTTACCTGCAGGGTGGATCATAGATCGGATCTCCGGTCAGCATTCCACGGTG-ATG 753 | ||||| |||| ||| ||| ||||||| ||||| |||||||| ||||| |||||| | Sbjct 656 ATTTCTTCCCTGGAGGATGGCTCATAGACCGGATATCCGGTCATCATTCGACGGTGCA-C 714 Query 754 AAAGCCTTTTCCAAACTCACCAATTTCTTTGAACTTGTGATTGATGATCATTTGAAGAGT 813 |||||||||||||||||| ||||||||||| ||| ||| || |||||||||||||||| | Sbjct 715 AAAGCCTTTTCCAAACTCGCCAATTTCTTTAAACATGTAATCGATGATCATTTGAAGACT 774 Query 814 GGGAAAATCGAAGATCACTCAGACATCATCAGTGTCATGTTGGATATGATCAACAAACCC 873 || | || |||||||||| |||||| | ||||||||||||||||||||||| ||||| Sbjct 775 -GG-ACCTC-AAGATCACTCGGACATCGTTAGTGTCATGTTGGATATGATCAATAAACCA 831 Query 874 ACCGAAGTTGGTTCTTAT-AAAGTCACCGATGATCATCTCAAAGGACTTATGTCGGATGT 932 || |||| | ||||| | |||||||| ||||| |||||||||||| | ||||| ||| | Sbjct 832 ACAAAAGTCGATTCTT-TCAAAGTCACTGATGACCATCTCAAAGGAGTCATGTCTGATAT 890 Query 933 GTTTTTGGCTGGAGTGAACGCGGGTTCCATCACAATGATATGGACGATGACAGAGTTAAG 992 |||||||||||||||| | | ||| ||||||| || ||||||| ||||||||| |||| Sbjct 891 GTTTTTGGCTGGAGTGGATGGGGGAGCCATCACGTTGTTATGGACAATGACAGAGCTAAG 950 Query 993 TAGACATCCGAGAGTGATG-AGAAAACTTCAAGAAGAGATTCGAGCAGCGCTCGGACCCA 1051 |||||||||||||||||| || ||||| ||||||||||| |||||| | || ||||||| Sbjct 951 CAGACATCCGAGAGTGATGAAG-AAACTCCAAGAAGAGATACGAGCAACTCTTGGACCCA 1009 Query 1052 ACAAAGAGAAAATCACAGAAGAAGACCTCGAGAAAGTTGAGTACTTGAAGA-TGGTGATC 1110 ||||||||| |||||||||||||| || || ||||||||||||||||| | |||||||| Sbjct 1010 ACAAAGAGAGAATCACAGAAGAAGTTCTAGAAAAAGTTGAGTACTTGAA-ACTGGTGATC 1068 Query 1111 GA-GGAAGCATTCAGATTACACCCACCGGCTCCTCTCTTACTCCCAAGACTAACAATGTC 1169 | |||| ||||||||||||||||||| ||||||||||| |||||||||||||| ||| | Sbjct 1069 -ATGGAAACATTCAGATTACACCCACCAGCTCCTCTCTTGCTCCCAAGACTAACTATGGC 1127 Query 1170 CGACATCAATATTCAAGGCTACAGCATTCCAAAGAACACCATGATCCAAATCAACACGTA 1229 |||||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||| Sbjct 1128 TGACATCAAGATTCAAGGCTACAACATTCCCAAGAACACCATGATCCACATCAACACGTA 1187 Query 1230 CACAATTGGACGTGACCCCAAAAACTGGACAAAA-CCCGA-CGAGTTCATCCCCGAGAGG 1287 ||| || ||| |||| || ||| |||||| |||| ||| | |||||||||||||||||| Sbjct 1188 CACGATAGGATGTGATCCTAAATACTGGA-AAAATCCC-AGTGAGTTCATCCCCGAGAGG 1245 Query 1288 TTTGTCGATAACCCTATCGAATACAAGGGTCAACATTTTGAGCTATTGCCGTTTGGAGCC 1347 ||| ||||||||| ||||||||| || || ||||||||||||||||||||||||||| || Sbjct 1246 TTTCTCGATAACCTTATCGAATATAACGGCCAACATTTTGAGCTATTGCCGTTTGGATCC 1305 Query 1348 GGACGTAGGGTCTGTCCCGGGATGGCCACGGGGATCACCATCGTCGAGCTTGGGCTTCTT 1407 ||||||||| ||||||| || ||| ||||||||||||||||||||||||| || |||||| Sbjct 1306 GGACGTAGGATCTGTCCTGGAATGACCACGGGGATCACCATCGTCGAGCTCGGCCTTCTT 1365 Query 1408 AGCCTTCTTTACTTCTTCGATTGGAGTTTGCCCAATGGAATGACCACTAAAGATATTGAC 1467 | |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 1366 AACCTTCTTTACTTCTTCGATTGGAGTTTGCCCAATGGAATGACCACTGCAGACATTGAC 1425 Query 1468 ATGGAAGAAGACGGAGCTTTTG-TCATCGCCAAGAAAGTCTCTCTTGAGCTCGTACCAAC 1526 ||||||||||| |||| ||| | | || |||||||||||| |||||| |||| ||||||| Sbjct 1426 ATGGAAGAAGATGGAGGTTTCGCT-ATGGCCAAGAAAGTCCCTCTTGTGCTCATACCAAC 1484 Query 1527 T-CTTCATCGCTGGTGA 1542 | || |||||||||||| Sbjct 1485 TTCT-CATCGCTGGTGA 1500 > Ahg898261 jgi|Araly1|898261|Al_scaffold_0005_2227 Length=1413 Score = 150 bits (81), Expect = 3e-35 Identities = 162/200 (81%), Gaps = 10/200 (5%) Strand=Plus/Plus Query 1282 GAGAGGTTTGTCG-ATAACC-CTATCGAA-TACAAGGGTCAACATTTTGAGCTATTGCCG 1338 ||||||||| ||| || ||| | ||| || ||||| ||||| ||| ||||| ||||| Sbjct 1213 GAGAGGTTT-TCGAAT-ACCTCGATC-AACTACAAAGGTCAGGATTACGAGCTCTTGCCA 1269 Query 1339 TTTGGAGCCGGACGTAG-GGTCTGTCCCGGGATGGCCACGGGGATCACCA-TCGTCGAGC 1396 |||||||| || ||||| | |||||| || ||| | ||| ||||||| || | |||| Sbjct 1270 TTTGGAGCAGGCCGTAGAAG-CTGTCCTGGTATGAACTTGGGAATCACCATTC-TTGAGC 1327 Query 1397 TTGGGCTTCTTAGCCTTCTTTACTTCTTCGATTGGAGTTTGCCCAATGGAATGACCACTA 1456 | || ||||||| | ||||||||||||| |||||||||||||||||||||||||||| | Sbjct 1328 TAGGCCTTCTTAACATTCTTTACTTCTTTGATTGGAGTTTGCCCAATGGAATGACCATTG 1387 Query 1457 AAGATATTGACATGGAAGAA 1476 |||| ||||||||||| ||| Sbjct 1388 AAGACATTGACATGGAGGAA 1407 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63344077435 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5