BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53280.1
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938228 jgi|Araly1|938228|scaffold_502419.1 2292 0.0
Ahg323127 jgi|Araly1|323127|fgenesh1_pm.C_scaffold_5000671 1537 0.0
Ahg898261 jgi|Araly1|898261|Al_scaffold_0005_2227 150 3e-35
> Ahg938228 jgi|Araly1|938228|scaffold_502419.1
Length=1537
Score = 2292 bits (1241), Expect = 0.0
Identities = 1434/1529 (94%), Gaps = 6/1529 (0%)
Strand=Plus/Plus
Query 30 aaaaaCAGATAAGAAAATGTCTATCTTTCTTTGTTTCCTCTTACTTCTT-CCACTCT-CT 87
||||||| | ||||||||||||||||| |||||||||||||||| |||| || |||| |
Sbjct 5 AAAAACAAACAAGAAAATGTCTATCTTCCTTTGTTTCCTCTTAC-TCTTGCCTCTCTCCA 63
Query 88 TTAATCTTCTTGAAAAAGCTCTTACCGTCGAAAGGGAAGCTTCCTCCGGGACCTAAGGGT 147
|| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 64 TT-ATCTTCTTAAAAAAGCTTTTACCGTCAAAAGGGAAGCTTCCTCCGGGACCTAAGGGT 122
Query 148 CTTCCGATCATCGGTAACTTGCACCAGTTTGGAAGATTTCTTCACAAATCTCTTCACAAA 207
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 123 CTTCCGATCATCGGAAACTTGCACCAGCTTGGAAGATTTCTTCACAAATCTCTTCACAAA 182
Query 208 ATCTCCCAAGAATATGGACCGGTGATGCTTCTCCATTTCGGGGTGGTCCCTGTGATAATT 267
||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 183 ATCTCTCAAAAATATGGACCGGTGATGCTTCTCCATTTCGGGGTAGTCCCTGTGATCATT 242
Query 268 GTCTCTTCCAAAGAAGGAGCTGAGGAAGTGCTCAAGACTCACGATCTTGAGACTTGTAGC 327
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 243 GTCTCTTCCAAAGAAGGAGCTGAGGAAGTGCTCAAGACTCATGATCTTGAGACTTGTAGC 302
Query 328 CGACCTAAGACGGTGGGGAGCGGGTTGTTTACTTACAACTTTAAAGATATTGGTTTTGCT 387
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 303 CGACCTAAGACGGTGGGGAGCGGGTTGTTTACTTACAACTTCAAAGATATTGGTTTTGCT 362
Query 388 CCGTATGGTGAGAATTGGCGAGAGATGAGGAAAATTGCGGTTTC-CGAGCTCTTTAGCCA 446
|||||||||||||| |||||||||||||||||||| |||| | | ||||||||||||||
Sbjct 363 CCGTATGGTGAGAACTGGCGAGAGATGAGGAAAATCGCGG-TGCTCGAGCTCTTTAGCCC 421
Query 447 GAAGAAGCTCAAATCTTTCAGGTATATTAGAGAGGACGAGAGCCAATTGTTGGTCCGGAA 506
|| ||||| || ||||||||||||||||||||||| |||| | | || |||||| |
Sbjct 422 CAAAAAGCTTAAGTCTTTCAGGTATATTAGAGAGGAAGAGAACGAGTTTTTGGTCAAGCG 481
Query 507 GGTATCAAAATCTGCTCTTGAGACACCAACTTCATCAGTTAATTTGAGGAAGGTCATTTT 566
|||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 482 GGTATCAAGTTCTGCTCGTGAGACACCAACTTCATCAGTTAATTTGAGGAAAGTCATTTT 541
Query 567 TACCTTCGCGGCAAGTATCATTTGTAGACTTTCTTTTGGACAAAATTTTTGCGATTTTGT 626
|||||| |||||||| ||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 542 TACCTTTGCGGCAAGCATCATTTGTAGACTTGCTTTTGGACAAAATTTCTGCGATTTTGT 601
Query 627 CGATATGGAGACAGTGGAAGAGTTGGTGCTTGAATCGGAGACCAACCTCGGCTCCCTGGC 686
||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| ||||
Sbjct 602 CGATATGGAGACAGTGGAAGAGTTGGTGCTTGAGTCGGAGTCCAACCTCGGTTCCTTGGC 661
Query 687 GTTTGCTGACTTCTTACCTGCAGGGTGGATCATAGATCGGATCTCCGGTCAGCATTCCAC 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TTTTGCTGACTTCTTACCTGCAGGGTGGATCATAGATCGGATCTCCGGTCAGCATTCCAG 721
Query 747 GGTGATGAAAGCCTTTTCCAAACTCACCAATTTCTTTGAACTTGTGATTGATGATCATTT 806
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GGTGAACAAAGCCTTTGCCAAACTCACCAATTTCTTTGAACTTGTGATTGATGATCATTT 781
Query 807 GAAGAGTGGGAAAATCGAAGATCACTCAGACATCATCAGTGTCATGTTGGATATGATCAA 866
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GAAGAGTGGAAAAATCCAAGATCACTCAGACATCATCAGTGTCATGTTGGATATGATCAA 841
Query 867 CAAACCCACCGAAGTTGGTTCTTATAAAGTCACCGATGATCATCTCAAAGGACTTATGTC 926
|||||||| |||| ||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 842 TAAACCCACTAAAGTCGGTTCTTATAAAGTCACCGATGACCATCTCAAAGGAGTTATGTC 901
Query 927 GGATGTGTTTTTGGCTGGAGTGAACGCGGGTTCCATCACAATGATATGGACGATGACAGA 986
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 902 GGATGTGTTTTTGGCTGGAGTGAACGCGGGATCCATCACAATGATATGGACGATGACAGA 961
Query 987 GTTAAGTAGACATCCGAGAGTGATGAGAAAACTTCAAGAAGAGATTCGAGCAGCGCTCGG 1046
| |||| || |||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 962 GCTAAGCAGGCATCCGAGAGTGATGAAAAAACTTCAAGAAGAGATTCGAGCAACGCTCGG 1021
Query 1047 ACCCAACAAAGAGAAAATCACAGAAGAAGACCTCGAGAAAGTTGAGTACTTGAAGATGGT 1106
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 1022 ACCCAACAAAGAGAAAATCACAGAAGAAGACCTAGAGAAAGTTGAGTACTTGAAGCTCGT 1081
Query 1107 GATCGAGGAAGCATTCAGATTACACCCACCGGCTCCTCTCTTACTCCCAAGACTAACAAT 1166
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1082 GATCGAGGAAGCATTCAGATTACACCCACCGGCTCCTCTCTTGCTCCCAAGACTAACAAT 1141
Query 1167 GTCCGACATCAATATTCAAGGCTACAGCATTCCAAAGAACACCATGATCCAAATCAACAC 1226
||| |||||||| ||||||||||||| |||||| |||||||||||||||||| |||||||
Sbjct 1142 GTCGGACATCAAGATTCAAGGCTACAACATTCCCAAGAACACCATGATCCAAGTCAACAC 1201
Query 1227 GTACACAATTGGACGTGACCCCAAAAACTGGACAAAACCCGACGAGTTCATCCCCGAGAG 1286
||||| ||||||||||| ||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1202 TTACACGATTGGACGTGATCCCAAAACCTGGACAGAACCCGACGAGTTCATCCCCGAGAG 1261
Query 1287 GTTTGTCGATAACCCTATCGAATACAAGGGTCAACATTTTGAGCTATTGCCGTTTGGAGC 1346
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1262 GTTTGTCGATAACCCTATCGAATACAAGGGTCAGCACTTTGAGCTATTGCCGTTTGGAGC 1321
Query 1347 CGGACGTAGGGTCTGTCCCGGGATGGCCACGGGGATCACCATCGTCGAGCTTGGGCTTCT 1406
|||||||||| ||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 1322 CGGACGTAGGATCTGTCCCGGGATGGCCACGGGGATTACCATCGTCGAGCTCGGCCTTCT 1381
Query 1407 TAGCCTTCTTTACTTCTTCGATTGGAGTTTGCCCAATGGAATGACCACTAAAGATATTGA 1466
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1382 TAACCTTCTTTACTTCTTCGATTGGAGTTTGCCTAATGGAATGACCACTAAAGATATTGA 1441
Query 1467 CATGGAAGAAGACGGAGCTTTTGTCATCGCCAAGAAAGTCTCTCTTGAGCTCGTACCAAC 1526
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1442 CATGGAAGAAGACGGAGCTTTTGTCATCGCCAAGAAAATCTCTCTTGAGCTCGTACCAAC 1501
Query 1527 TCTTCATCGCTGGTGAAGCATGCAACTAT 1555
|||||||||||||||||| ||| ||||||
Sbjct 1502 TCTTCATCGCTGGTGAAGAATGTAACTAT 1530
> Ahg323127 jgi|Araly1|323127|fgenesh1_pm.C_scaffold_5000671
Length=1500
Score = 1537 bits (832), Expect = 0.0
Identities = 1295/1517 (85%), Gaps = 37/1517 (2%)
Strand=Plus/Plus
Query 46 ATGTCTATCTTTCTTTGTTTCCTCTTACTTCTTCC-ACTCTCTTTAATCTTCTTGAAAAA 104
|||||| |||| |||||||||||||||| |||||| ||||||||| ||||||| ||||
Sbjct 1 ATGTCTGTCTTCCTTTGTTTCCTCTTAC-TCTTCCTTCTCTCTTTAGTCTTCTTTAAAAG 59
Query 105 GCTCTTACCGTCGAAAGGGAAGCTTCCTCCGGGACCTAAGGGTCTTCCGATCATCGGTAA 164
||| |||||||||||||| ||||||||||| ||||||| |||||| ||||||||||| ||
Sbjct 60 GCTTTTACCGTCGAAAGGAAAGCTTCCTCCTGGACCTACGGGTCTACCGATCATCGGAAA 119
Query 165 CTTGCACCAGTTTGG-AAGATTTCTTCACAAATCTCTTCACAAAATCTCCCAAGAATATG 223
||| |||||| |||| ||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 120 CTTACACCAGCTTGGAAAG-GTTCTTCACCAATCTTTTCACAAAATCTCCCAAGAATATG 178
Query 224 GACCGGTGATGCTTCTCCATTTCGGGGTGGTCCCTGTGATAATTGTCTCTTCCAAAGAAG 283
|||| ||| ||||||||||||||||||| ||||| ||||| ||||||| ||||||||||
Sbjct 179 GACCAGTGGTGCTTCTCCATTTCGGGGTAGTCCCAGTGATCGTTGTCTCCTCCAAAGAAG 238
Query 284 GAGCTGAGGAAGTGCTCAAGACTCACGATCTTGAGACTTGTAGCCGACCTAAGAC-GGTG 342
||||||||||||||||||| ||||| ||||||||||||||||||||||| || || | |
Sbjct 239 GAGCTGAGGAAGTGCTCAAAACTCATGATCTTGAGACTTGTAGCCGACCGAAAACAGCCG 298
Query 343 GGGAGCGGGTTGTTTACTTACAACTTTAAAGATATTGGTTTTGCTCCGTATGGTGAGAAT 402
|| || ||||||||||||||||||||||| |||||||| ||||| | ||||||| |
Sbjct 299 CGG-TTGGCTTGTTTACTTACAACTTTAAAGACATTGGTTTCGCTCCCTTTGGTGAGGAC 357
Query 403 TGGCGAGAGATGAGGAAAATTGCGGTTTC-CGAGCTCTTTAGCCAGAAGAAGCTCAAATC 461
||| |||||||||||||||| | | | |||||||||||| ||| || ||||| ||
Sbjct 358 TGGAGAGAGATGAGGAAAATCAC-AATGCTTGAGCTCTTTAGCTTGAAAAAACTCAAGTC 416
Query 462 TTTCAGGTATATTAGAGAGGACGAGAGCCAATTGTTGGTCCGGAAGGTATCAAAATCTGC 521
||| ||||| |||||||| || ||||| ||||||||||| ||| |||| ||||||||
Sbjct 417 TTTTAGGTACATTAGAGAAGAAGAGAGTGAATTGTTGGTCAAGAAATTATCCAAATCTGC 476
Query 522 TCTTGAGACACCAACTTCATCAGTTAATTTGAGGAAGGTCATTTTT-ACCTTCGCGGCAA 580
| ||| || ||| |||| ||||||||||||||| ||| ||||| ||||| | ||||
Sbjct 477 TGACGAGTCAGAAACCTCATTAGTTAATTTGAGGAAAGTC-TTTTTCTCCTTCACAGCAA 535
Query 581 GTATCATTTGTAGACTTTCTTTTGGACA-AAATT-----TTTGCGATTTTGTCGATATGG 634
| ||||||||||||||| | |||||||| || || |||||||||| |||||||
Sbjct 536 GCATCATTTGTAGACTTGCCTTTGGACAGAACTTCCACCAGCGCGATTTTGTTGATATGG 595
Query 635 AGACAGTGGAAGAGTTGGTGCTTGAATCGGAGACCAACCTCGGCTCCCTGGCGTTTGCTG 694
||| |||||||||||||||| |||| || ||||||||||||||| || ||||||| || |
Sbjct 596 AGAGAGTGGAAGAGTTGGTGGTTGAGTCAGAGACCAACCTCGGCACCTTGGCGTTCGCCG 655
Query 695 ACTTCTTACCTGCAGGGTGGATCATAGATCGGATCTCCGGTCAGCATTCCACGGTG-ATG 753
| ||||| |||| ||| ||| ||||||| ||||| |||||||| ||||| |||||| |
Sbjct 656 ATTTCTTCCCTGGAGGATGGCTCATAGACCGGATATCCGGTCATCATTCGACGGTGCA-C 714
Query 754 AAAGCCTTTTCCAAACTCACCAATTTCTTTGAACTTGTGATTGATGATCATTTGAAGAGT 813
|||||||||||||||||| ||||||||||| ||| ||| || |||||||||||||||| |
Sbjct 715 AAAGCCTTTTCCAAACTCGCCAATTTCTTTAAACATGTAATCGATGATCATTTGAAGACT 774
Query 814 GGGAAAATCGAAGATCACTCAGACATCATCAGTGTCATGTTGGATATGATCAACAAACCC 873
|| | || |||||||||| |||||| | ||||||||||||||||||||||| |||||
Sbjct 775 -GG-ACCTC-AAGATCACTCGGACATCGTTAGTGTCATGTTGGATATGATCAATAAACCA 831
Query 874 ACCGAAGTTGGTTCTTAT-AAAGTCACCGATGATCATCTCAAAGGACTTATGTCGGATGT 932
|| |||| | ||||| | |||||||| ||||| |||||||||||| | ||||| ||| |
Sbjct 832 ACAAAAGTCGATTCTT-TCAAAGTCACTGATGACCATCTCAAAGGAGTCATGTCTGATAT 890
Query 933 GTTTTTGGCTGGAGTGAACGCGGGTTCCATCACAATGATATGGACGATGACAGAGTTAAG 992
|||||||||||||||| | | ||| ||||||| || ||||||| ||||||||| ||||
Sbjct 891 GTTTTTGGCTGGAGTGGATGGGGGAGCCATCACGTTGTTATGGACAATGACAGAGCTAAG 950
Query 993 TAGACATCCGAGAGTGATG-AGAAAACTTCAAGAAGAGATTCGAGCAGCGCTCGGACCCA 1051
|||||||||||||||||| || ||||| ||||||||||| |||||| | || |||||||
Sbjct 951 CAGACATCCGAGAGTGATGAAG-AAACTCCAAGAAGAGATACGAGCAACTCTTGGACCCA 1009
Query 1052 ACAAAGAGAAAATCACAGAAGAAGACCTCGAGAAAGTTGAGTACTTGAAGA-TGGTGATC 1110
||||||||| |||||||||||||| || || ||||||||||||||||| | ||||||||
Sbjct 1010 ACAAAGAGAGAATCACAGAAGAAGTTCTAGAAAAAGTTGAGTACTTGAA-ACTGGTGATC 1068
Query 1111 GA-GGAAGCATTCAGATTACACCCACCGGCTCCTCTCTTACTCCCAAGACTAACAATGTC 1169
| |||| ||||||||||||||||||| ||||||||||| |||||||||||||| ||| |
Sbjct 1069 -ATGGAAACATTCAGATTACACCCACCAGCTCCTCTCTTGCTCCCAAGACTAACTATGGC 1127
Query 1170 CGACATCAATATTCAAGGCTACAGCATTCCAAAGAACACCATGATCCAAATCAACACGTA 1229
|||||||| ||||||||||||| |||||| ||||||||||||||||| |||||||||||
Sbjct 1128 TGACATCAAGATTCAAGGCTACAACATTCCCAAGAACACCATGATCCACATCAACACGTA 1187
Query 1230 CACAATTGGACGTGACCCCAAAAACTGGACAAAA-CCCGA-CGAGTTCATCCCCGAGAGG 1287
||| || ||| |||| || ||| |||||| |||| ||| | ||||||||||||||||||
Sbjct 1188 CACGATAGGATGTGATCCTAAATACTGGA-AAAATCCC-AGTGAGTTCATCCCCGAGAGG 1245
Query 1288 TTTGTCGATAACCCTATCGAATACAAGGGTCAACATTTTGAGCTATTGCCGTTTGGAGCC 1347
||| ||||||||| ||||||||| || || ||||||||||||||||||||||||||| ||
Sbjct 1246 TTTCTCGATAACCTTATCGAATATAACGGCCAACATTTTGAGCTATTGCCGTTTGGATCC 1305
Query 1348 GGACGTAGGGTCTGTCCCGGGATGGCCACGGGGATCACCATCGTCGAGCTTGGGCTTCTT 1407
||||||||| ||||||| || ||| ||||||||||||||||||||||||| || ||||||
Sbjct 1306 GGACGTAGGATCTGTCCTGGAATGACCACGGGGATCACCATCGTCGAGCTCGGCCTTCTT 1365
Query 1408 AGCCTTCTTTACTTCTTCGATTGGAGTTTGCCCAATGGAATGACCACTAAAGATATTGAC 1467
| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1366 AACCTTCTTTACTTCTTCGATTGGAGTTTGCCCAATGGAATGACCACTGCAGACATTGAC 1425
Query 1468 ATGGAAGAAGACGGAGCTTTTG-TCATCGCCAAGAAAGTCTCTCTTGAGCTCGTACCAAC 1526
||||||||||| |||| ||| | | || |||||||||||| |||||| |||| |||||||
Sbjct 1426 ATGGAAGAAGATGGAGGTTTCGCT-ATGGCCAAGAAAGTCCCTCTTGTGCTCATACCAAC 1484
Query 1527 T-CTTCATCGCTGGTGA 1542
| || ||||||||||||
Sbjct 1485 TTCT-CATCGCTGGTGA 1500
> Ahg898261 jgi|Araly1|898261|Al_scaffold_0005_2227
Length=1413
Score = 150 bits (81), Expect = 3e-35
Identities = 162/200 (81%), Gaps = 10/200 (5%)
Strand=Plus/Plus
Query 1282 GAGAGGTTTGTCG-ATAACC-CTATCGAA-TACAAGGGTCAACATTTTGAGCTATTGCCG 1338
||||||||| ||| || ||| | ||| || ||||| ||||| ||| ||||| |||||
Sbjct 1213 GAGAGGTTT-TCGAAT-ACCTCGATC-AACTACAAAGGTCAGGATTACGAGCTCTTGCCA 1269
Query 1339 TTTGGAGCCGGACGTAG-GGTCTGTCCCGGGATGGCCACGGGGATCACCA-TCGTCGAGC 1396
|||||||| || ||||| | |||||| || ||| | ||| ||||||| || | ||||
Sbjct 1270 TTTGGAGCAGGCCGTAGAAG-CTGTCCTGGTATGAACTTGGGAATCACCATTC-TTGAGC 1327
Query 1397 TTGGGCTTCTTAGCCTTCTTTACTTCTTCGATTGGAGTTTGCCCAATGGAATGACCACTA 1456
| || ||||||| | ||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1328 TAGGCCTTCTTAACATTCTTTACTTCTTTGATTGGAGTTTGCCCAATGGAATGACCATTG 1387
Query 1457 AAGATATTGACATGGAAGAA 1476
|||| ||||||||||| |||
Sbjct 1388 AAGACATTGACATGGAGGAA 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63344077435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5