BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53300.1
Length=1670
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898260 jgi|Araly1|898260|Al_scaffold_0005_2226 1611 0.0
Ahg898261 jgi|Araly1|898261|Al_scaffold_0005_2227 1293 0.0
> Ahg898260 jgi|Araly1|898260|Al_scaffold_0005_2226
Length=1521
Score = 1611 bits (872), Expect = 0.0
Identities = 1320/1536 (86%), Gaps = 31/1536 (2%)
Strand=Plus/Plus
Query 51 ATGTCTATGTTCCTAGGTTTGCTCTTCCTCTTCCCTCTCTTTTTCATCCTATTTAAAAAC 110
|||||||| |||||| |||| || |||||||||||||||||||| || ||||||||||
Sbjct 1 ATGTCTATCTTCCTATGTTTTCTATTCCTCTTCCCTCTCTTTTTGATTATATTTAAAAAG 60
Query 111 CTTTTACCTCCGAGAAA-GAAGCTTCCTCCGGGACCAACGGGTCTTCCGCTAATAGGAAA 169
||| |||| ||| ||| |||||||||||||||||| |||||||||||| | ||||||||
Sbjct 61 ATTTCACCTTCGA-AAATGAAGCTTCCTCCGGGACCTACGGGTCTTCCGATTATAGGAAA 119
Query 170 CTTGCACCAGCTTGGAAGATTGCTTCACAGTTCTCTTCACAAGCTCTCTTTAGAACATGG 229
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTGCACCAGTTTGGAAGATTGCTTCACAGTTCTCTTCACAAGCTCTCTTTAGAACATGG 179
Query 230 ACCAGTGATGCTTGTCCGTTGGGGGGTCGTCCCTATGGCCGTGTTCTCTTCCAACGAAGC 289
|||||||||||| |||||| |||||||||||| | | ||| |||| ||||| |||||
Sbjct 180 GCCAGTGATGCTTCTCCGTTTCGGGGTCGTCCCTGTAGTCGTAATCTCCTCCAAGGAAGC 239
Query 290 AGCTAAAGAAGTTCTCAAGACTCATGACTTAGAGACTTGTAACCGTCCTAAGCTGGTCGC 349
|||||||||||||||||||||||||||| |||||||||| | ||| |||||| ||||| |
Sbjct 240 AGCTAAAGAAGTTCTCAAGACTCATGACCTAGAGACTTGCACCCGACCTAAGATGGTCAC 299
Query 350 CAACGGGTT-GTTTACTCACGGCTAT-AAAGACATTGGTTTCACTCAGTATGGTGAGGAA 407
||| |||| |||| || || || | |||||||||||||| ||||| ||||| |||||
Sbjct 300 -AACCGGTTTGTTTTCTTACAACT-TCAAAGACATTGGTTTTACTCAATATGGCGAGGAC 357
Query 408 TGGCGAGAGATGAAAAAGTTCGTGGGGCTTGAGCTCTTTAGTCCaaaaaaaCATAAGTCT 467
|||||||||||||||||| |||||||||| |||||||||||||| |||||||| ||||||
Sbjct 358 TGGCGAGAGATGAAAAAGCTCGTGGGGCTCGAGCTCTTTAGTCCGAAAAAACAAAAGTCT 417
Query 468 TTCAGGTATATCAGAGAGGAAGA-AGGTGACTTGTTGGTCAAGAAAATATCAAATTATGC 526
|| ||||| |||||||||||||| || ||||||| ||||||||||||| ||||| | | |
Sbjct 418 TTTAGGTACATCAGAGAGGAAGAGAG-TGACTTGCTGGTCAAGAAAATTTCAAAATCTAC 476
Query 527 TCAAACACAAACCTTGGTGGATTTGAGAAAATCC-TTGTTCTCCTACACCGCCAGTATCA 585
||||||||||||| ||||||||| ||||| || || ||||||| ||||||| ||||
Sbjct 477 TCAAACACAAACCCAAGTGGATTTGGGAAAAGCCCTT-TTCTCCTTCACCGCCGGTATTT 535
Query 586 TATTTAGAGAAGCCTTTGGACAGAACTTCCGCGAGTGCGATTACATCAATATGGACAAAC 645
|||||||| ||||||||||| |||||||||||||| |||| ||| ||||||| | |
Sbjct 536 TATTTAGACTTGCCTTTGGACAAAACTTCCGCGAGTGTGATTTTATCGATATGGAGAGAG 595
Query 646 TTGAAGAGCTGGTG-CAAGAGACAGAAACCAACGTATGCAGCTTGGCATTCACTGACTTC 704
| |||||||||||| || |||||||| ||||||||| ||| |||||||||||||||||||
Sbjct 596 TCGAAGAGCTGGTGACA-GAGACAGAGACCAACGTAGGCACCTTGGCATTCACTGACTTC 654
Query 705 TTCCCCA-GAGGTCTCGGGTGGCTTGTAGACCGGATCTCCGGTCAGCATTCGAGGATGAA 763
||||||| | |||||||| |||||| |||||||| |||| ||||||| ||||||||||||
Sbjct 655 TTCCCCACG-GGTCTCGGATGGCTTATAGACCGGCTCTCTGGTCAGCGTTCGAGGATGAA 713
Query 764 CATAGCCTTTTCCAAACTCACCACTTTCTTTGAAGATGTGATCGATGAGCTTTTGAAGAC 823
|| || ||||||||||||||||| ||| ||| || ||||||| ||||| | ||| |||||
Sbjct 714 CAAAGTCTTTTCCAAACTCACCAATTTATTTCAACATGTGATTGATGATCATTTAAAGAC 773
Query 824 TAAACAACTT-GATGATCACTCAGACCTCGTCACTGCCATGTTGGATGTGATCAATAGAC 882
| |||||| || ||||||||||||||| ||| ||||||||||||| ||||||||| ||
Sbjct 774 TGAACAACACCGA-GATCACTCAGACCTCATCAGTGCCATGTTGGATATGATCAATAAAC 832
Query 883 CCAGAAA-ATTCGGTTCTTTAAAGATCACTTACGATCATCTCATAGCAATGATGTCGGAT 941
| | ||| || || |||| |||||||||| ||||||||||| || | | |||||| ||
Sbjct 833 CTACAAATATA-GGCACTTTCAAGATCACTTCCGATCATCTCAAAGGAGTCATGTCGAAT 891
Query 942 GTGGTTTTGGCGGGAGTAAACGCTGGAACAGTAACAATGATATGGACGATGACAGAGCTT 1001
||| ||||||||||||| ||||| || | | || |||||||||||||||||||||||
Sbjct 892 GTGTTTTTGGCGGGAGTTAACGCCGGGGTAATCACGATGATATGGACGATGACAGAGCTA 951
Query 1002 ACAAGACATCCTAGAGTGATGAAGAAACTTCAAGAAGAAATTCGAGCAACACTCGGA-CC 1060
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 952 ATTAGACATCCAAGAGTGATGAAGAAACTTCAAGAAGAGATTCGAGCAACACTCGGGTCC 1011
Query 1061 AAACAAAGAGAGAATCACAGAAGAAGATCTAGAGAAAGTTGAGTACTTGAATCTGGTGAT 1120
|| |||||||||||||||||||||||||||| |||||||||||||| | || |||||||
Sbjct 1012 AA-CAAAGAGAGAATCACAGAAGAAGATCTACAGAAAGTTGAGTACCTAAAGATGGTGAT 1070
Query 1121 CAAAGAATCATTCAGACTACATCCACCAGCTCCTCTCTTGCTCCCAAGAGAAACAATGTC 1180
| | ||| |||||||| |||| ||||| ||||| |||||||||||||| |||||||||
Sbjct 1071 CGAGGAAACATTCAGATTACACCCACCTGCTCCAATCTTGCTCCCAAGATTAACAATGTC 1130
Query 1181 CGACATCGAGATTCAAGGCTACCACATTCCCAAGAACGCCCATG-TAAAGATCAACACTT 1239
||||||| |||||||||||||| |||||||||| ||| || ||| | ||||||||| ||
Sbjct 1131 CGACATCAAGATTCAAGGCTACAACATTCCCAAAAACACC-ATGATTGAGATCAACATTT 1189
Query 1240 ATGCGATAGGACGTGATCCTAAACGTTGGACTAACCCTGAAGAATTCAAT-CCTGAGAGG 1298
| |||||||||||||||| ||| |||||||||||||||| ||||||| | ||||| ||
Sbjct 1190 ACACGATAGGACGTGATCCCAAATGTTGGACTAACCCTGACGAATTCA-TGCCTGAAAGA 1248
Query 1299 TTTTTGAATACCTCAATCAACTACAAGGGTCAGCATTACGAGCTCTTGCCCTTTGGAGCC 1358
||||| ||||| || || ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1249 TTTTTCAATACTTCTATAAACTACAAGGGTCAGCATTTCGAGCTCTTGCCCTTTGGAGCT 1308
Query 1359 GGTCGTAGGAACTGTCCAGGTATGACCTTGGGAATCACCATTCTTGAGCTAGGTCTTCTT 1418
|||||||||| |||||| || ||| |||| ||||||||||||||||||||||| ||||||
Sbjct 1309 GGTCGTAGGAGCTGTCCCGGGATGGCCTTAGGAATCACCATTCTTGAGCTAGGCCTTCTT 1368
Query 1419 AA-CATTCTCTACTACTTCGATTGGAGTTTACCC-AGTGGAATGACCATTAAAGACATTG 1476
|| | |||| || | |||| |||||||||| ||| | ||||||||||||| ||| ||||
Sbjct 1369 AATC-TTCTTTATTTCTTCAATTGGAGTTTGCCCGA-TGGAATGACCATTGCAGATATTG 1426
Query 1477 ACATGGAAGAAGACGGCGCTTTGAACATCGCCAAGAAAGTCCCTCT-GCAGCTCGTACCA 1535
|||||||||||| || ||||| ||||||||||||||| | ||||| | |||||||||||
Sbjct 1427 ACATGGAAGAAGTTGGAGCTTTAAACATCGCCAAGAAAATTCCTCTTG-AGCTCGTACCA 1485
Query 1536 ACTCTTCCATAATCACTCGTGAATAATA-GTATTAA 1570
|||||||||| |||| ||||||| || | |||||||
Sbjct 1486 ACTCTTCCATCATCATTCGTGAACAAAAAGTATTAA 1521
> Ahg898261 jgi|Araly1|898261|Al_scaffold_0005_2227
Length=1413
Score = 1293 bits (700), Expect = 0.0
Identities = 1044/1211 (86%), Gaps = 20/1211 (2%)
Strand=Plus/Plus
Query 51 ATGTCTATGTTCCTAGGTTTGCTCTTCCTCTTCCCTCTCTTTTTCATCCTATTTAAAAAC 110
|||||||| ||||||||||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct 1 ATGTCTATCTTCCTAGGTTTCCTCTTCCTTTTCCCTCTCTTTTTGATCCTCTTTAAAAAG 60
Query 111 CTTTTACCTCCGAGAAA-GAAGCTTCCTCCGGGACCAACG-GGTCTTCCGCTAATAGGAA 168
||||||||| ||| ||| |||||||||||| ||||| | | ||||| ||| | |||||||
Sbjct 61 CTTTTACCTTCGA-AAAGGAAGCTTCCTCCAGGACCTA-GAGGTCTCCCGATCATAGGAA 118
Query 169 ACTTGCACCAGCTTGGAAGATTGCTTCACAGT-TCTCTTCACAAGCTCTCTTTAGAACAT 227
|||||||||| |||||||||| ||||||||| | | |||||||||||||||||||||||
Sbjct 119 ACTTGCACCATCTTGGAAGATCACTTCACAGTGT-TTTTCACAAGCTCTCTTTAGAACAT 177
Query 228 GGACCAGTGATGCTTGTCCGTTGGGGGGTCGTCCCTATGGCCGTGTTCTCTTCCAACGAA 287
||||||||||||||| ||| || || || |||||| ||| ||| ||||||||||| |||
Sbjct 178 GGACCAGTGATGCTTCTCCATTTCGGAGTTGTCCCTGTGGTCGTCTTCTCTTCCAAAGAA 237
Query 288 GCAGCTAAAGAAGTTCTCAAGACTCATGACTTAGAGACTTGTAACCGTCCTAAGCTGGTC 347
||||||||||||||||||| ||||||||| |||||||||| | ||| |||||||||||
Sbjct 238 ACAGCTAAAGAAGTTCTCAAAACTCATGACCTAGAGACTTGCACCCGACCTAAGCTGGTG 297
Query 348 GCCAACGGGTTGTTTACTCACGGCTAT-AAAGACATTGGTTTCACTCAGTATGGTGAGGA 406
|| || ||||||||| ||| | || | ||||||||||||||||||||||| ||||| ||
Sbjct 298 GCGAATGGGTTGTTTTCTCGCAACT-TCAAAGACATTGGTTTCACTCAGTACGGTGAAGA 356
Query 407 ATGGCGAGAGATGAAAAAGTTCGTGGGGCTTGAGCTCTTTAGTCCaaaaaaaCATAAGTC 466
|||| ||||||||||||| | |||||||| |||||||||||||| ||||| || |||||
Sbjct 357 CTGGCAAGAGATGAAAAAGCTGGTGGGGCTCGAGCTCTTTAGTCCGAAAAAGCAAAAGTC 416
Query 467 TTTCAGGTATATCAGAGAGGAAGAAGGTGACTTGTTGGTCAAGAAAATATCAAATTATGC 526
|||||||||||||||||| |||||||| |||||| ||||||||||||||||||| | ||
Sbjct 417 TTTCAGGTATATCAGAGAAGAAGAAGGAGACTTGCTGGTCAAGAAAATATCAAAATCCGC 476
Query 527 TCAAACACAAACCTTGGTGGATTTGAGAAAATCCT-TGTTCTCCTACACCGCCAGTATCA 585
||||||||||||| | | |||||||||||| ||| | ||||||| |||||| ||| ||
Sbjct 477 TCAAACACAAACCCTAATAGATTTGAGAAAAGCCTCT-TTCTCCTTCACCGCTGGTACCA 535
Query 586 TATTTAGAGAAGCCTTTGGACAGAACTTCCGCGAGTGCGATTACATCAATATGGACAAAC 645
| |||||| |||||||||||||||||||| |||||| |||| |||| |||||| || ||
Sbjct 536 TCTTTAGACTAGCCTTTGGACAGAACTTCCACGAGTGTGATTTCATCGATATGGGCAGAC 595
Query 646 TTGAAGAGCTGGTGCAAGAGACAGAAACCAACGTATGCAGCTTGGCATTCACTGACTTCT 705
||||||||||||||| |||| | ||||||||||| |||| ||||||| ||||||||||||
Sbjct 596 TTGAAGAGCTGGTGCTAGAGGCGGAAACCAACGTTTGCATCTTGGCACTCACTGACTTCT 655
Query 706 TCCCCA-GAGGTCTCGGGTGGCTTGTAGACCGGATCTCCGGTC-AGCATTCGAGGATGAA 763
| |||| | ||||| || ||||||| ||||||||| || |||| | ||||||||||||||
Sbjct 656 TACCCACG-GGTCTTGGTTGGCTTGCAGACCGGATATCTGGTCGA-CATTCGAGGATGAA 713
Query 764 CATAGCCTTTTCCAAACTCACCACTTTCTTTGAAGATGTGATCGATGAGCTTTTGAAGAC 823
|| ||||||||| |||||||||| ||| ||| || ||||||||||||||| || ||||
Sbjct 714 CAAAGCCTTTTCAAAACTCACCAATTTATTTCAACATGTGATCGATGAGCAATTAAAGAT 773
Query 824 TAAACAACTTGATGATCACTC-AGACCTCGTCACTGCCATGTTGGATGTGATCAATAGAC 882
| |||||| | ||||| || | ||||||||| ||||||||||||| ||||||||||||
Sbjct 774 TGGACAACTCCAAGATCATTCCA-ACCTCGTCAGTGCCATGTTGGATATGATCAATAGAC 832
Query 883 CCAGAAAATTCGGTTCTTTAAAGATCACTTACGATCATCTCATAGCAATGATGTCGGATG 942
|| |||||| ||||||| || ||||||| | | ||||||||||| |||||||||| ||
Sbjct 833 CCTCTAAATTCAGTTCTTTCAATATCACTTCCAACCATCTCATAGCCATGATGTCGGGTG 892
Query 943 TGGTTTTGGCGGGAGTAAACGCTGGAACAGTAACAATGATATGGACGATGACAGAGCTTA 1002
|||||||||| ||||| ||||| |||||| | || ||| |||||| |||||||| || |
Sbjct 893 TGGTTTTGGCCGGAGTGAACGCGGGAACAATCACGATGGTATGGATAATGACAGAACTAA 952
Query 1003 -CAAGACATCCTAGAGTGATGAAGAAACTTCAAGAAGAAATTCGAGCAACACTCGGA-CC 1060
|| ||||||| || |||||||| ||||| |||| ||| |||||| ||||||||||| ||
Sbjct 953 TCA-GACATCCAAGGGTGATGAAAAAACTCCAAGCAGAGATTCGAACAACACTCGGATCC 1011
Query 1061 AAACAAAGAGAGAATCACAGAAGAAGATCTAGAGAAAGTTGAGTACTTGAATCTGGTGAT 1120
|| |||||||||||||||||||||||||||| ||||||| ||||||||||| || |||||
Sbjct 1012 AA-CAAAGAGAGAATCACAGAAGAAGATCTACAGAAAGTCGAGTACTTGAAGCTTGTGAT 1070
Query 1121 CAAAGAATCATTCAGACTACATCCACCAGCTCCTCTCTTGCTCCCAAGAGAAACAATGTC 1180
||||||| |||||||| ||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1071 CAAAGAAACATTCAGATTACATCCACCATCTCCTCTCTTGCTACCAAGAGAAACAATGTC 1130
Query 1181 CGACATCGAGATTCAAGGCTACCACATTCCCAAGAACGCCCATGTAAAGATCAACACTTA 1240
||| ||||||||||||||||||||||||||||||||||||| | | | ||||||||||||
Sbjct 1131 CGATATCGAGATTCAAGGCTACCACATTCCCAAGAACGCCCTTATCAGGATCAACACTTA 1190
Query 1241 TGCGATAGGAC 1251
|||||||||
Sbjct 1191 CACGATAGGAC 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62620362780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5