BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53310.1
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938231 jgi|Araly1|938231|scaffold_502422.1 595 2e-169
> Ahg938231 jgi|Araly1|938231|scaffold_502422.1
Length=863
Score = 595 bits (322), Expect = 2e-169
Identities = 419/465 (90%), Gaps = 10/465 (2%)
Strand=Plus/Plus
Query 652 gaagatgaagatgaagatgaagatgatgatggtagctttgatgaagatgaagaaATCAGC 711
||||| |||||| | ||| | |||||||||||||| || |||||||||||||||||||
Sbjct 399 GAAGAAGAAGATTCATCTGATGTTGATGATGGTAGCTGTGGTGAAGATGAAGAAATCAGC 458
Query 712 CAGAGTCTTTATCCGATT---GACGAAGAGACTGCAACCGATGCTGCAGTTTTTGAAGGG 768
|||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 459 CAGAGTCTTTATCCTATTGACGACGAAGAGACCAAAACCGATGCTGCAGTTTTTGAAGGG 518
Query 769 AACTTGGACGTGGAAGCTTTAACTAATCCACACTTTCCGACTACGCTCAAGAACAGGATT 828
||||| ||| | |||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 519 AACTTAGACATTCAAGCTTTAACTAATCCACACTTTCCGACCAGGCTCAAGAACAGGATT 578
Query 829 TATGAACTGTTGATCCCAGCCAATGTGGTGAAGGATAATAACCTTGAA-TTTGGTTCA-T 886
|||||||||||||||||||||||||||||||| |||||||| ||| || ||||| | | |
Sbjct 579 TATGAACTGTTGATCCCAGCCAATGTGGTGAATGATAATAAGCTT-AAGTTTGG-TGATT 636
Query 887 CCATCAAGTACATCGATGGAGAAGGAACCTTAGTAGGGCTAAGAGGAAAATGGGCTGATA 946
|| |||||||||| ||||||||||| || ||||||||||||| |||||||||||||||||
Sbjct 637 CCGTCAAGTACATTGATGGAGAAGGGACATTAGTAGGGCTAAAAGGAAAATGGGCTGATA 696
Query 947 AGAGGGTTTGCTTCAAAGGATGGGACAGGATTTGCAGAAGGAACAGGCTCAAAAAGCACC 1006
||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 697 AGAGGATTTGTTTCAAAGGATGGGACAGGATTTGCAGAAGGAACAGGCTTAAAAAACATC 756
Query 1007 AAGATACTGTCGAATGCGAGCTTCTTCATGATGACCAGAAGATGGTTCATTCCATCCGAG 1066
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 757 AAGATACTGTCGAATGCGAGCTTCTTCATGATGACCAGAAGATGGTTCATTCCATCAGAG 816
Query 1067 TCCATGTCTTGCGTAGAGA-TGCTTGATCCTCTCACCATTCACCA 1110
||||||||||||||||| | || |||||||||| |||| |||||
Sbjct 817 TCCATGTCTTGCGTAGA-ACTGATTGATCCTCTTACCAC-CACCA 859
Score = 536 bits (290), Expect = 1e-151
Identities = 399/451 (88%), Gaps = 10/451 (2%)
Strand=Plus/Plus
Query 217 TTCCAACATCATTCCATGGCTGACGATAGCGAATTGTATCCTCGTTTCTTCAAAGTGTTC 276
||||||| || ||||||||||||| ||||||| |||| ||| |||||||||||||| |||
Sbjct 6 TTCCAACCTCGTTCCATGGCTGACAATAGCGATTTGTTTCCACGTTTCTTCAAAGTTTTC 65
Query 277 CTCGT-TGAATCGGCTTCTGAATCGTTGATGATTCCGTTGCCTTTTATGGCA-TTTCTTG 334
||| | |||| |||||||||| |||||| ||||||||||| |||| |||| | |||||||
Sbjct 66 CTC-TCTGAAACGGCTTCTGATTCGTTGGTGATTCCGTTGTCTTTCATGG-AGTTTCTTG 123
Query 335 CTGATCCATTGCCAAAGACAGTGAAGCTCCAAGGTCTTGGAGGAAA-ACTTTGGACTGTG 393
||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||
Sbjct 124 CTGATCCATTGCCAAAGACAGTGAAGCTCCAAGGTATTGGAGGAAAGA-TTTGGACTGTG 182
Query 394 AGCTTGAAGAAAATAAGCGGAGCTGCGTATCTTACTAGAGGATGGCCAAAATTCGCAGAG 453
|||||| |||| |||||||| |||| |||| |||||| |||||| ||||||||||| ||
Sbjct 183 AGCTTGGAGAAGATAAGCGGGGCTGTGTATTTTACTACCGGATGGTCAAAATTCGCAAAG 242
Query 454 GAACATGAGCTGAAGAACGGAGAGTTCATGACATTTGTGTATGATGGTCATCGTACCTTT 513
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 243 GACCACGAGCTGAAGAACGGAGAGTTCATGACATTCGTGTATGATGGTCATCGTACCTTT 302
Query 514 GAAGTGAGTGTCTTTGATCGTTG-GGGTAGCAAAGAGGTCAGAGCTGAAATACAAGCCAT 572
||||||||||||||||| |||| |||| ||||||| |||||||||||||||||||||
Sbjct 303 GAAGTGAGTGTCTTTGAGCGTTTTGGGTT-CAAAGAGACCAGAGCTGAAATACAAGCCAT 361
Query 573 ACCACTTTCTGATTCTGATTCTGATTCTGTTGTGGAAGACGAAAAAGACTCAACtgatgt 632
| ||||||||||||| |||||||||||||||||||||| ||| |||| ||| |||||||
Sbjct 362 TCAACTTTCTGATTCTCATTCTGATTCTGTTGTGGAAGAAGAAGAAGATTCATCTGATGT 421
Query 633 tgttgaagat-gatgatgatgaagatgaaga 662
|| ||| | | | || || ||||||||||||
Sbjct 422 TGATGATGGTAGCTG-TGGTGAAGATGAAGA 451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50703479610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5