BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53320.1
Length=1974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485705 jgi|Araly1|485705|fgenesh2_kg.5__1697__AT3G53320.1 2422 0.0
Ahg923604 jgi|Araly1|923604|scaffold_104885.1 348 1e-94
Ahg901573 jgi|Araly1|901573|Al_scaffold_0004_2223 117 3e-25
> Ahg485705 jgi|Araly1|485705|fgenesh2_kg.5__1697__AT3G53320.1
Length=1864
Score = 2422 bits (1311), Expect = 0.0
Identities = 1604/1743 (92%), Gaps = 30/1743 (2%)
Strand=Plus/Plus
Query 57 TTTGAGCAAACTCAACATTTCGATCTCTCTGTTCAATGGAAGATAAAGAGAGCAAGAAAA 116
|||||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||
Sbjct 21 TTTGAGCAAACTCAGCATTTCGA--TCTCTGTTCAATGGAAGATAACGAGACCAAGAAAA 78
Query 117 GCGAAGTTGAGGTCGATGGCCTTGGTTTGATTGATGTCGCTGT-TGAAGACGATAGCCTT 175
|||| ||||| |||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 79 GCGAGGTTGAAGTCGATGGCCTTGGTTTGATTGATGTCGCT-TCTGAAGACGATAGCCTT 137
Query 176 CTCTTCTCCGAGTTTTCCGAGACAGATAAGGATGATAAATGTTTGAAGGAGGATAAAGAT 235
||||||||||||||||| ||| ||||||||||||| || ||||||||||| || ||||||
Sbjct 138 CTCTTCTCCGAGTTTTCAGAGGCAGATAAGGATGAGAATTGTTTGAAGGATGACAAAGAT 197
Query 236 CTAAACTTCATGAGGGATACACAGTATTGTGATGATGAGATACTTGCTTCTTCTGTTGAA 295
||||| ||||||||||| |||||||||||||||||||||||||| | |||||| |||||
Sbjct 198 CTAAATTTCATGAGGGACACACAGTATTGTGATGATGAGATACTGGTTTCTTCAATTGAA 257
Query 296 GAGAAGGAAGAGGTGCTTCAACCTCACGAGTCGCCTGAGCCTGAGAAAGTTATGAAGAAA 355
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 258 GAGAAGGAAGAGGTGCTTCAACCTCACGAGTCGCCTGACCCTGAGAAGGTGATGAAGAAA 317
Query 356 GGAAAGTATAATTTGCGTAAAAGTCTTGCTTGGGACAATGAGTTCTTCACTAGCGCTGGT 415
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 GGAAAGTATAATTTGCGCAAAAGTCTTGCTTGGGACAATGAGTTCTTCACTAGCGCTGGT 377
Query 416 GTTTTGGAACCGGAAGAACTGTCCAGCATGATGGAAAGCAATCATAAGAGTGGGAAGAAA 475
||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 378 GTTTTGGAACCTGAAGAACTGTCAAGCATGATGGAAAACAATCATAAGAGTGGGAAGAAA 437
Query 476 GCTTTACCGACCATTCTAGAGGATATTAATAGATCTACAGAATCCATTTCTACATTTCAA 535
||||| |||||||| ||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct 438 ACTTTATCGACCATTATAGAGGATATTGATAGATCTACGGAATCCATTTCTACCTTTCAA 497
Query 536 AGTGACTGCACTGTGGAGAACAGTCAGGAGTTTGTTTTGTTTGAGGATGTTAGAGCATCT 595
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 498 AGTGACTGCACTGTGGAGAACAGTCAGGAGTTTGTTTTGTTTGAGGATGTAAGAGCGTCT 557
Query 596 ATTCAAAGGTCTGCTAAAACATCTGATGTTGCAACACCCGGGAAAAGTAATGTGTTGAGA 655
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 558 ATTCAAAGGTCTGCTAAAACATCTGATGCTGCAACACCCGGGAAAAATAATGAATTGAGA 617
Query 656 GCAACAGACGTAGCAATTAGCCCAACTTCAAGTACAGTGGACGTCACTGCCACTCAGGGA 715
|||||||| |||||||| | |||||||||||||||||||||| ||| |||| |||| | |
Sbjct 618 GCAACAGAAGTAGCAATGACCCCAACTTCAAGTACAGTGGACATCATTGCCTCTCAAGAA 677
Query 716 AAGACTAAA--T-CT-A-AA-GGCAGTCCCAGAAATCCG-AGTAGAGTACAAGGACCAGG 768
||| |||| | || | || ||| ||| | | | | ||||| |||||||| |||
Sbjct 678 AAG-GTAAATCTGCTAACAACTGCA--CCCTG---T-GGTATTAGAGCACAAGGACTAGG 730
Query 769 GAAGGCAACCAAACAGCCTGTTG-CTACAAGAGGTCTCAGTACATCCATTTCCAAGCCAC 827
||||||||| ||||||||||||| || ||||||||||||||||||||||||| |||||||
Sbjct 731 GAAGGCAACAAAACAGCCTGTTGCCT-CAAGAGGTCTCAGTACATCCATTTCTAAGCCAC 789
Query 828 CCAACGGACTCAGCAAAGTCAGGCCCTTGTCAACAACATCGACGAACAGGTCATCATTAG 887
||||||||||||||||||||||||||||||||||||| || ||||||||| | |||||||
Sbjct 790 CCAACGGACTCAGCAAAGTCAGGCCCTTGTCAACAACGTCAACGAACAGGGCGTCATTAG 849
Query 888 ATATAAGCAAAACGC-AACAAGAAAAGAATTCCAAATTACCTGCGGGTAAAGAGCCTCTG 946
||||||||||||| | |||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 850 ATATAAGCAAAAC-CAAACAAGAAAATAATTCCAAATTCCCTGCGGGTAAAGAGCCAATG 908
Query 947 GGTCCAAGAATATCCATGTCGCGACGTGCTAAACCCGTCTTACCAAAACCTGGTGTGCCT 1006
|||| ||||||||||| |||||||| ||||||| ||||| |||||||||||| |||||
Sbjct 909 AGTCCCAGAATATCCATTTCGCGACGCACTAAACCTGTCTTGCCAAAACCTGGTTTGCCT 968
Query 1007 TTTAAGTCTTCTTCACGTTCTTCAGATGCCTCAAAGAATGAAATGACCTCTTCATGTTCT 1066
|| || ||||||| ||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 969 TTGAAATCTTCTTTACGTTCTTCAGTTGCCTCAAAAAATGAAATGACCTCTTCATGCTCT 1028
Query 1067 TCACTAGAGAGCTGTGCCAGTGCTTCATCTAGCGCTTCTCACAAA-CCTTCTATAGATTC 1125
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1029 TCACTAGAGAGCTGTGCCAGTGCTTCATCTAGCGCTTCTCA-AAATCCTTCTATAGATTC 1087
Query 1126 GATAAAGAAGAAGAATGATTCAAGTTCCAGATTATCTTCCCAGCCATTGGCAAATCGATC 1185
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1088 GATAAAGAAGAAGAGTGATTCAAGTTCCAGATTAGCTTCCCAGCCATTGGCAAATCGTTC 1147
Query 1186 TACATCTAGAGGTATTATGGGCCAGCCAAGAATCCCACCCCAACAAACCAATAAGACATC 1245
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1148 TACATCTAGAGGTATTATGGGCCAGGCAAGAATCCCACCCCAACCAACCAATAAGACATC 1207
Query 1246 CAAGCCCAAGCTTTCCTCCAGTGTACCAACTGCTGGTTCGATCAGTGACTATTCATCAGA 1305
|||| ||||||||||||| |||||||||||||||||||| |||||||| | |||||||||
Sbjct 1208 CAAGTCCAAGCTTTCCTCTAGTGTACCAACTGCTGGTTCTATCAGTGAGTGTTCATCAGA 1267
Query 1306 GTCATCACGAGCTTCTGAAACTAGTAAAATGGCTAATGGTAACCAGAAAACAGTCTCTCG 1365
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1268 GTCATCACGAGCTTCTGAAACTAGTAAAATGGCTAACGGTAACCAGAAAACGGTCTCTCG 1327
Query 1366 TGAAAAGGTTCCTGCAAATGATAATACAGTACAAACTGTGAAACCTCTCAAGAACTCCAA 1425
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1328 TGAAAAGGGTCCTGCAAATGCTAATACAGTACAAACTGTGAAACCTCTCAAGAACTCCAA 1387
Query 1426 AGATACATCTGTTGTCCAAGCTGATGCTAAGGAAGGCACAAAACGAGTTTCAGCTATCAA 1485
|||| |||||||||| ||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct 1388 AGATGCATCTGTTGTTCAATCTGATGCTAAGGAAAGCACGAAACGAGTTTCAGCTATCAA 1447
Query 1486 CGGTGGTTTGGTTCCTTCAGCTTCCGCAAAACCATCAGGTCTCCGTGTGCCATCACCAAA 1545
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1448 CGGTGGTTTGGTTCCTTCAGCTTCCACAAAACCATCAGGTCTCCGCGTGCCATCACCAAA 1507
Query 1546 AATCGGCTTCTTTGATGGAGCAAGACATGGATCATCTTCATCTGCCAGTAAGAAGTCTGG 1605
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1508 AATCGGCTTCTTCGATGGGGCAAGACATGGATCATCTTCATCTGCCAGTAAGAAGTC--- 1564
Query 1606 AGGAAAGACTCAACCTGCGAGGTCTCCAATACAAGAGTCGACGAATTCAAAAAGTAAGGC 1665
||||||| ||||||| || ||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1565 AGGAAAGTCTCAACCAGCCAGGTCTCCAATACAAGAGTCGTCGAATTCAAAAACTAAGGC 1624
Query 1666 AAGTTCAAAGGTTGTCTCTGTCTCGTCTCCTAAACTGCCGAACAAATTGTATTCCAAAAT 1725
|||||||||| ||| |||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1625 AAGTTCAAAGCTTGACTCTGTCTCGTCTCCTAAACTGGCAAACAAATTGTATTCCAAAAT 1684
Query 1726 CGATGCAGAAGATCAACTTGAGGGATGATGA-GA-A-TGAGATGCTTGAAGTTATCAATA 1782
| ||||||||||||||||||||||||||||| || | |||||||| ||||||||||||||
Sbjct 1685 CAATGCAGAAGATCAACTTGAGGGATGATGATGAGAATGAGATGCCTGAAGTTATCAATA 1744
Query 1783 GTT 1785
|||
Sbjct 1745 GTT 1747
Score = 99.0 bits (53), Expect = 1e-19
Identities = 60/63 (95%), Gaps = 1/63 (2%)
Strand=Plus/Plus
Query 1904 TTAATCTAACGAGTTCTTGTATTATGAAATTTTACGAATTAATCTGGTTTATAAGATACT 1963
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1803 TTAATCTAACGAGTTCTAGTATTATGGAATTT-ACGAATTAATCTGGTTTATAAGATACT 1861
Query 1964 CTT 1966
|||
Sbjct 1862 CTT 1864
> Ahg923604 jgi|Araly1|923604|scaffold_104885.1
Length=556
Score = 348 bits (188), Expect = 1e-94
Identities = 231/251 (92%), Gaps = 5/251 (2%)
Strand=Plus/Plus
Query 432 AACTGTCCAGCATGATGGA-AAGCAATCATAAGAGTGGGAAGAAAGCTTTACCGACCATT 490
||||||||||||||||||| || |||||| ||||||||| ||||||||||||| ||||||
Sbjct 227 AACTGTCCAGCATGATGGAGAA-CAATCACAAGAGTGGG-AGAAAGCTTTACCTACCATT 284
Query 491 CTAGAGGATATTAATAGATCTACAGAATCCATTTCTACATTTCAAAGTGACTGCACTGTG 550
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 285 ATAGAGGATATTAATAGATCTACGGAATCCATTTCTACATTTCAAAGTGACTGCACTGTG 344
Query 551 GAGAACAGTCAGGAGTTTGTTTTGTTTGAGGATGTTAGAGCATCTATTCAAAGGTCTGCT 610
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 345 GAGAATAGTCAGGAGTTTGTTTTGTTTGAGGATGTAAGAGCGTCTATTCAAAGGTCTGCT 404
Query 611 AAAACATCTGATGTTGCAACACCCGGGAAAAGTAATGT-GTTGAGAGCAACAGACGTAGC 669
||||||||||||| |||||| |||||||||| ||||| || ||||| |||||| |||||
Sbjct 405 AAAACATCTGATGCTGCAACGCCCGGGAAAAATAATGAAGT-GAGAGAAACAGAAGTAGC 463
Query 670 AATTAGCCCAA 680
||| | |||||
Sbjct 464 AATGACCCCAA 474
Score = 159 bits (86), Expect = 5e-38
Identities = 186/229 (81%), Gaps = 28/229 (12%)
Strand=Plus/Plus
Query 130 CGATGGCCTTGGTTTGATTGATGTCGCTGT-TGAAGACGATAGCCTTCTCTTCTCCGAGT 188
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
Sbjct 1 CGATGGCCTTGGTTTGATTGATGTCGCT-TCTGAAGACGATAGCCTTCTCTTCTCCTCCT 59
Query 189 TTTCCGAG--AC--AGATA--AG------G--A--T--G-AT-AAA-T-GTTTGAAGGAG 226
|| |||| || || || || | | | | || ||| | ||||||||||
Sbjct 60 TTCCCGACCCACCCAGCTACGAGTTTTCCGGCAGATAAGGATGAAAATTGTTTGAAGGAT 119
Query 227 GATAAAGATCTAAACTTCATGAGGGATACAC-AGTATTGTGATGATGAGATACTTGCTT- 284
|| ||||||||||| |||||||||||||||| | |||||||||||||||||| ||| ||
Sbjct 120 GACAAAGATCTAAATTTCATGAGGGATACACTA-TATTGTGATGATGAGATA-TTGGTTT 177
Query 285 CTTCTGTTGAAGAGAAGGAAGAGGTGCTTCAACCTCACGAGTCGCCTGA 333
|| | ||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 178 CTACAATTGAAGAGAAGGAAGAGGTACTTCAACCTCATGAGTCGCCTGA 226
> Ahg901573 jgi|Araly1|901573|Al_scaffold_0004_2223
Length=1299
Score = 117 bits (63), Expect = 3e-25
Identities = 222/295 (75%), Gaps = 26/295 (9%)
Strand=Plus/Plus
Query 1291 TGACTATTCATCA-GAGTCATCACGAGCTTCTGA-AACTAGTAAAATGGCTAATGGTAAC 1348
||||| |||||| || ||| | || |||||| | | ||| |||||||||||| || ||
Sbjct 765 TGACTGGTCATCAGGA-TCACCGCGGGCTTCT-ACACCTAATAAAATGGCTAAAAGT-AC 821
Query 1349 C-AGAAAACAGTCTC-TCGTGAAAAG-GTTCCTGCAAATGATAATACAGTACAAACTGTG 1405
| |||||| ||| | | ||| | || | |||| ||| |||| ||||| ||||||| ||
Sbjct 822 CAAGAAAAGTGTC-CATGGTG-ATAGCGGTCCTACAACTGATGATACAAAACAAACTTTG 879
Query 1406 AAACCTCTCAAGAACTCCAAAGATACATCTGTTGTCCAAGCTGA---T--G-C---TAAG 1456
| |||| | || || || |||||| |||||||||||||| ||| | | | |||
Sbjct 880 AGACCTTTGAACAATTCTAAAGATTTATCTGTTGTCCAAGATGACCCTAAGCCGGATAAA 939
Query 1457 GAAGGCACAAAACGAGTTTCAGCTATCAACGGTGG-TTTGGTTCCTTCAGCTTCC--GCA 1513
||||||||||||| | ||||| | ||| ||||| | || ||||| ||| || | |
Sbjct 940 CAAGGCACAAAACGTGGTTCAGTTGTCAGTGGTGGCGAT-GTGCCTTCTGCTACCATG-A 997
Query 1514 --AAACCATCAGGTCTCCGTGTGCCATCACCAAAAATCGGCTTCTTTGATGGAGC 1566
|||||| | || |||||||||||||||||||||||||||| |||||| |||||
Sbjct 998 TGAAACCAACGGGACTCCGTGTGCCATCACCAAAAATCGGCTACTTTGACGGAGC 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74199797260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5