BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G53320.1 Length=1974 Score E Sequences producing significant alignments: (Bits) Value Ahg485705 jgi|Araly1|485705|fgenesh2_kg.5__1697__AT3G53320.1 2422 0.0 Ahg923604 jgi|Araly1|923604|scaffold_104885.1 348 1e-94 Ahg901573 jgi|Araly1|901573|Al_scaffold_0004_2223 117 3e-25 > Ahg485705 jgi|Araly1|485705|fgenesh2_kg.5__1697__AT3G53320.1 Length=1864 Score = 2422 bits (1311), Expect = 0.0 Identities = 1604/1743 (92%), Gaps = 30/1743 (2%) Strand=Plus/Plus Query 57 TTTGAGCAAACTCAACATTTCGATCTCTCTGTTCAATGGAAGATAAAGAGAGCAAGAAAA 116 |||||||||||||| |||||||| ||||||||||||||||||||| |||| |||||||| Sbjct 21 TTTGAGCAAACTCAGCATTTCGA--TCTCTGTTCAATGGAAGATAACGAGACCAAGAAAA 78 Query 117 GCGAAGTTGAGGTCGATGGCCTTGGTTTGATTGATGTCGCTGT-TGAAGACGATAGCCTT 175 |||| ||||| |||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 79 GCGAGGTTGAAGTCGATGGCCTTGGTTTGATTGATGTCGCT-TCTGAAGACGATAGCCTT 137 Query 176 CTCTTCTCCGAGTTTTCCGAGACAGATAAGGATGATAAATGTTTGAAGGAGGATAAAGAT 235 ||||||||||||||||| ||| ||||||||||||| || ||||||||||| || |||||| Sbjct 138 CTCTTCTCCGAGTTTTCAGAGGCAGATAAGGATGAGAATTGTTTGAAGGATGACAAAGAT 197 Query 236 CTAAACTTCATGAGGGATACACAGTATTGTGATGATGAGATACTTGCTTCTTCTGTTGAA 295 ||||| ||||||||||| |||||||||||||||||||||||||| | |||||| ||||| Sbjct 198 CTAAATTTCATGAGGGACACACAGTATTGTGATGATGAGATACTGGTTTCTTCAATTGAA 257 Query 296 GAGAAGGAAGAGGTGCTTCAACCTCACGAGTCGCCTGAGCCTGAGAAAGTTATGAAGAAA 355 |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 258 GAGAAGGAAGAGGTGCTTCAACCTCACGAGTCGCCTGACCCTGAGAAGGTGATGAAGAAA 317 Query 356 GGAAAGTATAATTTGCGTAAAAGTCTTGCTTGGGACAATGAGTTCTTCACTAGCGCTGGT 415 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 318 GGAAAGTATAATTTGCGCAAAAGTCTTGCTTGGGACAATGAGTTCTTCACTAGCGCTGGT 377 Query 416 GTTTTGGAACCGGAAGAACTGTCCAGCATGATGGAAAGCAATCATAAGAGTGGGAAGAAA 475 ||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 378 GTTTTGGAACCTGAAGAACTGTCAAGCATGATGGAAAACAATCATAAGAGTGGGAAGAAA 437 Query 476 GCTTTACCGACCATTCTAGAGGATATTAATAGATCTACAGAATCCATTTCTACATTTCAA 535 ||||| |||||||| ||||||||||| |||||||||| |||||||||||||| |||||| Sbjct 438 ACTTTATCGACCATTATAGAGGATATTGATAGATCTACGGAATCCATTTCTACCTTTCAA 497 Query 536 AGTGACTGCACTGTGGAGAACAGTCAGGAGTTTGTTTTGTTTGAGGATGTTAGAGCATCT 595 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 498 AGTGACTGCACTGTGGAGAACAGTCAGGAGTTTGTTTTGTTTGAGGATGTAAGAGCGTCT 557 Query 596 ATTCAAAGGTCTGCTAAAACATCTGATGTTGCAACACCCGGGAAAAGTAATGTGTTGAGA 655 |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| Sbjct 558 ATTCAAAGGTCTGCTAAAACATCTGATGCTGCAACACCCGGGAAAAATAATGAATTGAGA 617 Query 656 GCAACAGACGTAGCAATTAGCCCAACTTCAAGTACAGTGGACGTCACTGCCACTCAGGGA 715 |||||||| |||||||| | |||||||||||||||||||||| ||| |||| |||| | | Sbjct 618 GCAACAGAAGTAGCAATGACCCCAACTTCAAGTACAGTGGACATCATTGCCTCTCAAGAA 677 Query 716 AAGACTAAA--T-CT-A-AA-GGCAGTCCCAGAAATCCG-AGTAGAGTACAAGGACCAGG 768 ||| |||| | || | || ||| ||| | | | | ||||| |||||||| ||| Sbjct 678 AAG-GTAAATCTGCTAACAACTGCA--CCCTG---T-GGTATTAGAGCACAAGGACTAGG 730 Query 769 GAAGGCAACCAAACAGCCTGTTG-CTACAAGAGGTCTCAGTACATCCATTTCCAAGCCAC 827 ||||||||| ||||||||||||| || ||||||||||||||||||||||||| ||||||| Sbjct 731 GAAGGCAACAAAACAGCCTGTTGCCT-CAAGAGGTCTCAGTACATCCATTTCTAAGCCAC 789 Query 828 CCAACGGACTCAGCAAAGTCAGGCCCTTGTCAACAACATCGACGAACAGGTCATCATTAG 887 ||||||||||||||||||||||||||||||||||||| || ||||||||| | ||||||| Sbjct 790 CCAACGGACTCAGCAAAGTCAGGCCCTTGTCAACAACGTCAACGAACAGGGCGTCATTAG 849 Query 888 ATATAAGCAAAACGC-AACAAGAAAAGAATTCCAAATTACCTGCGGGTAAAGAGCCTCTG 946 ||||||||||||| | |||||||||| ||||||||||| ||||||||||||||||| || Sbjct 850 ATATAAGCAAAAC-CAAACAAGAAAATAATTCCAAATTCCCTGCGGGTAAAGAGCCAATG 908 Query 947 GGTCCAAGAATATCCATGTCGCGACGTGCTAAACCCGTCTTACCAAAACCTGGTGTGCCT 1006 |||| ||||||||||| |||||||| ||||||| ||||| |||||||||||| ||||| Sbjct 909 AGTCCCAGAATATCCATTTCGCGACGCACTAAACCTGTCTTGCCAAAACCTGGTTTGCCT 968 Query 1007 TTTAAGTCTTCTTCACGTTCTTCAGATGCCTCAAAGAATGAAATGACCTCTTCATGTTCT 1066 || || ||||||| ||||||||||| ||||||||| |||||||||||||||||||| ||| Sbjct 969 TTGAAATCTTCTTTACGTTCTTCAGTTGCCTCAAAAAATGAAATGACCTCTTCATGCTCT 1028 Query 1067 TCACTAGAGAGCTGTGCCAGTGCTTCATCTAGCGCTTCTCACAAA-CCTTCTATAGATTC 1125 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 1029 TCACTAGAGAGCTGTGCCAGTGCTTCATCTAGCGCTTCTCA-AAATCCTTCTATAGATTC 1087 Query 1126 GATAAAGAAGAAGAATGATTCAAGTTCCAGATTATCTTCCCAGCCATTGGCAAATCGATC 1185 |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| || Sbjct 1088 GATAAAGAAGAAGAGTGATTCAAGTTCCAGATTAGCTTCCCAGCCATTGGCAAATCGTTC 1147 Query 1186 TACATCTAGAGGTATTATGGGCCAGCCAAGAATCCCACCCCAACAAACCAATAAGACATC 1245 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 1148 TACATCTAGAGGTATTATGGGCCAGGCAAGAATCCCACCCCAACCAACCAATAAGACATC 1207 Query 1246 CAAGCCCAAGCTTTCCTCCAGTGTACCAACTGCTGGTTCGATCAGTGACTATTCATCAGA 1305 |||| ||||||||||||| |||||||||||||||||||| |||||||| | ||||||||| Sbjct 1208 CAAGTCCAAGCTTTCCTCTAGTGTACCAACTGCTGGTTCTATCAGTGAGTGTTCATCAGA 1267 Query 1306 GTCATCACGAGCTTCTGAAACTAGTAAAATGGCTAATGGTAACCAGAAAACAGTCTCTCG 1365 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 1268 GTCATCACGAGCTTCTGAAACTAGTAAAATGGCTAACGGTAACCAGAAAACGGTCTCTCG 1327 Query 1366 TGAAAAGGTTCCTGCAAATGATAATACAGTACAAACTGTGAAACCTCTCAAGAACTCCAA 1425 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1328 TGAAAAGGGTCCTGCAAATGCTAATACAGTACAAACTGTGAAACCTCTCAAGAACTCCAA 1387 Query 1426 AGATACATCTGTTGTCCAAGCTGATGCTAAGGAAGGCACAAAACGAGTTTCAGCTATCAA 1485 |||| |||||||||| ||| |||||||||||||| |||| |||||||||||||||||||| Sbjct 1388 AGATGCATCTGTTGTTCAATCTGATGCTAAGGAAAGCACGAAACGAGTTTCAGCTATCAA 1447 Query 1486 CGGTGGTTTGGTTCCTTCAGCTTCCGCAAAACCATCAGGTCTCCGTGTGCCATCACCAAA 1545 ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 1448 CGGTGGTTTGGTTCCTTCAGCTTCCACAAAACCATCAGGTCTCCGCGTGCCATCACCAAA 1507 Query 1546 AATCGGCTTCTTTGATGGAGCAAGACATGGATCATCTTCATCTGCCAGTAAGAAGTCTGG 1605 |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1508 AATCGGCTTCTTCGATGGGGCAAGACATGGATCATCTTCATCTGCCAGTAAGAAGTC--- 1564 Query 1606 AGGAAAGACTCAACCTGCGAGGTCTCCAATACAAGAGTCGACGAATTCAAAAAGTAAGGC 1665 ||||||| ||||||| || ||||||||||||||||||||| |||||||||||| |||||| Sbjct 1565 AGGAAAGTCTCAACCAGCCAGGTCTCCAATACAAGAGTCGTCGAATTCAAAAACTAAGGC 1624 Query 1666 AAGTTCAAAGGTTGTCTCTGTCTCGTCTCCTAAACTGCCGAACAAATTGTATTCCAAAAT 1725 |||||||||| ||| |||||||||||||||||||||| | |||||||||||||||||||| Sbjct 1625 AAGTTCAAAGCTTGACTCTGTCTCGTCTCCTAAACTGGCAAACAAATTGTATTCCAAAAT 1684 Query 1726 CGATGCAGAAGATCAACTTGAGGGATGATGA-GA-A-TGAGATGCTTGAAGTTATCAATA 1782 | ||||||||||||||||||||||||||||| || | |||||||| |||||||||||||| Sbjct 1685 CAATGCAGAAGATCAACTTGAGGGATGATGATGAGAATGAGATGCCTGAAGTTATCAATA 1744 Query 1783 GTT 1785 ||| Sbjct 1745 GTT 1747 Score = 99.0 bits (53), Expect = 1e-19 Identities = 60/63 (95%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 1904 TTAATCTAACGAGTTCTTGTATTATGAAATTTTACGAATTAATCTGGTTTATAAGATACT 1963 ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1803 TTAATCTAACGAGTTCTAGTATTATGGAATTT-ACGAATTAATCTGGTTTATAAGATACT 1861 Query 1964 CTT 1966 ||| Sbjct 1862 CTT 1864 > Ahg923604 jgi|Araly1|923604|scaffold_104885.1 Length=556 Score = 348 bits (188), Expect = 1e-94 Identities = 231/251 (92%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 432 AACTGTCCAGCATGATGGA-AAGCAATCATAAGAGTGGGAAGAAAGCTTTACCGACCATT 490 ||||||||||||||||||| || |||||| ||||||||| ||||||||||||| |||||| Sbjct 227 AACTGTCCAGCATGATGGAGAA-CAATCACAAGAGTGGG-AGAAAGCTTTACCTACCATT 284 Query 491 CTAGAGGATATTAATAGATCTACAGAATCCATTTCTACATTTCAAAGTGACTGCACTGTG 550 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 285 ATAGAGGATATTAATAGATCTACGGAATCCATTTCTACATTTCAAAGTGACTGCACTGTG 344 Query 551 GAGAACAGTCAGGAGTTTGTTTTGTTTGAGGATGTTAGAGCATCTATTCAAAGGTCTGCT 610 ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 345 GAGAATAGTCAGGAGTTTGTTTTGTTTGAGGATGTAAGAGCGTCTATTCAAAGGTCTGCT 404 Query 611 AAAACATCTGATGTTGCAACACCCGGGAAAAGTAATGT-GTTGAGAGCAACAGACGTAGC 669 ||||||||||||| |||||| |||||||||| ||||| || ||||| |||||| ||||| Sbjct 405 AAAACATCTGATGCTGCAACGCCCGGGAAAAATAATGAAGT-GAGAGAAACAGAAGTAGC 463 Query 670 AATTAGCCCAA 680 ||| | ||||| Sbjct 464 AATGACCCCAA 474 Score = 159 bits (86), Expect = 5e-38 Identities = 186/229 (81%), Gaps = 28/229 (12%) Strand=Plus/Plus Query 130 CGATGGCCTTGGTTTGATTGATGTCGCTGT-TGAAGACGATAGCCTTCTCTTCTCCGAGT 188 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||| | Sbjct 1 CGATGGCCTTGGTTTGATTGATGTCGCT-TCTGAAGACGATAGCCTTCTCTTCTCCTCCT 59 Query 189 TTTCCGAG--AC--AGATA--AG------G--A--T--G-AT-AAA-T-GTTTGAAGGAG 226 || |||| || || || || | | | | || ||| | |||||||||| Sbjct 60 TTCCCGACCCACCCAGCTACGAGTTTTCCGGCAGATAAGGATGAAAATTGTTTGAAGGAT 119 Query 227 GATAAAGATCTAAACTTCATGAGGGATACAC-AGTATTGTGATGATGAGATACTTGCTT- 284 || ||||||||||| |||||||||||||||| | |||||||||||||||||| ||| || Sbjct 120 GACAAAGATCTAAATTTCATGAGGGATACACTA-TATTGTGATGATGAGATA-TTGGTTT 177 Query 285 CTTCTGTTGAAGAGAAGGAAGAGGTGCTTCAACCTCACGAGTCGCCTGA 333 || | ||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 178 CTACAATTGAAGAGAAGGAAGAGGTACTTCAACCTCATGAGTCGCCTGA 226 > Ahg901573 jgi|Araly1|901573|Al_scaffold_0004_2223 Length=1299 Score = 117 bits (63), Expect = 3e-25 Identities = 222/295 (75%), Gaps = 26/295 (9%) Strand=Plus/Plus Query 1291 TGACTATTCATCA-GAGTCATCACGAGCTTCTGA-AACTAGTAAAATGGCTAATGGTAAC 1348 ||||| |||||| || ||| | || |||||| | | ||| |||||||||||| || || Sbjct 765 TGACTGGTCATCAGGA-TCACCGCGGGCTTCT-ACACCTAATAAAATGGCTAAAAGT-AC 821 Query 1349 C-AGAAAACAGTCTC-TCGTGAAAAG-GTTCCTGCAAATGATAATACAGTACAAACTGTG 1405 | |||||| ||| | | ||| | || | |||| ||| |||| ||||| ||||||| || Sbjct 822 CAAGAAAAGTGTC-CATGGTG-ATAGCGGTCCTACAACTGATGATACAAAACAAACTTTG 879 Query 1406 AAACCTCTCAAGAACTCCAAAGATACATCTGTTGTCCAAGCTGA---T--G-C---TAAG 1456 | |||| | || || || |||||| |||||||||||||| ||| | | | ||| Sbjct 880 AGACCTTTGAACAATTCTAAAGATTTATCTGTTGTCCAAGATGACCCTAAGCCGGATAAA 939 Query 1457 GAAGGCACAAAACGAGTTTCAGCTATCAACGGTGG-TTTGGTTCCTTCAGCTTCC--GCA 1513 ||||||||||||| | ||||| | ||| ||||| | || ||||| ||| || | | Sbjct 940 CAAGGCACAAAACGTGGTTCAGTTGTCAGTGGTGGCGAT-GTGCCTTCTGCTACCATG-A 997 Query 1514 --AAACCATCAGGTCTCCGTGTGCCATCACCAAAAATCGGCTTCTTTGATGGAGC 1566 |||||| | || |||||||||||||||||||||||||||| |||||| ||||| Sbjct 998 TGAAACCAACGGGACTCCGTGTGCCATCACCAAAAATCGGCTACTTTGACGGAGC 1052 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74199797260 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5