BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53330.1
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938233 jgi|Araly1|938233|scaffold_502424.1 688 0.0
Ahg343365 jgi|Araly1|343365|fgenesh1_pg.C_scaffold_3003128 640 0.0
> Ahg938233 jgi|Araly1|938233|scaffold_502424.1
Length=1376
Score = 688 bits (372), Expect = 0.0
Identities = 511/575 (89%), Gaps = 22/575 (4%)
Strand=Plus/Plus
Query 365 caccaccaccaccaagcaagacccatgaacggtcacga-cccattactccttcaccacca 423
||||||||||||||||||||| |||||||| |||| | || | | |||||| ||||||
Sbjct 767 CACCACCACCACCAAGCAAGATCCATGAACCCTCAC-ATCCGA-T--TCCTTCTCCACCA 822
Query 424 ccaccaagcaagacccatgaaccgtcacgtccgaatactcctccaccaccaccaccaccG 483
||||| ||||||| ||||||||| ||||||||| || | |||||||||||||||||
Sbjct 823 CCACCGAGCAAGATCCATGAACCCTCACGTCCG-AT--TACTCCACCACCACCACCA--- 876
Query 484 AGCAAGACCCATGAACCCTCACGT-CGCATTACTCCTTCACCACCACCACCGAGC-AAGA 541
||||||| |||||||||||||||| || ||| |||| ||| | ||||||||||| |||
Sbjct 877 AGCAAGATCCATGAACCCTCACGTCCG-ATTCCTCCACCACTATCACCACCGAGCAAAG- 934
Query 542 TCCTTCCTTTTGGTAAGATCTAC-AGAGTTGGTGACTACGGAGGATGGAGCGTTTATTAC 600
|||||||||| |||||||||||| || |||||||||| | ||||||||||||||||| ||
Sbjct 935 TCCTTCCTTTGGGTAAGATCTACAAG-GTTGGTGACTCCAGAGGATGGAGCGTTTATAAC 993
Query 601 AGTTACTACTATTACAAGTGGAGTGAGGGTAAACAGTTTCATGTTGAAGATACTCTCTTT 660
|||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| |
Sbjct 994 AGTTACTACTATTACAGGTGGAGTGAGGGAAAACAGTTTCATGTTGGAGATACTCTCTAT 1053
Query 661 TTCCAATACAACAAGGAACTCAACGACGTTAGGGAAATCACCGATGAACTTGAGTTCAGA 720
||| |||| |||||| | |||||||||||||||||||||| |||||| |||||||||| |
Sbjct 1054 TTCGAATATAACAAGTACCTCAACGACGTTAGGGAAATCAGCGATGATCTTGAGTTCAAA 1113
Query 721 TCTTGCGAATC-GACTTCTACTGTAGCTGTGTACAAAACGGGACACGATCTCATTAAGCT 779
|| |||||| | | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1114 TCCTGCGAA-CAAAATTCTACAGTAGCTGTGTACAAAACGGGACACGATCTCATTAAGCT 1172
Query 780 CACTAAACCAGGAGTGCATTATTTTGTAAGCTTAAAGACCGGTCTTTGTCAGGCTGGGAT 839
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1173 TACCAAACCAGGAGTGCATTATTTTGTAAGCTTAAAAACCGGTCTTTGTCAGGCTGGCAT 1232
Query 840 TAAGCTTCGAGTCACGGTGCAACCATCAACCGAAGCTGTTACTTT---CCCGAATGTTCC 896
|||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1233 TAAGCTTCGAGTCATGGTGCAACCATTAACCGAAGCTGTTACTTTATTCCCGAATGTTCC 1292
Query 897 CAAGAAGAAGTTGTCACCTACCGTCAACAGATGGT 931
|||||||||||||||||||| ||||||||| ||||
Sbjct 1293 CAAGAAGAAGTTGTCACCTATCGTCAACAGGTGGT 1327
Score = 329 bits (178), Expect = 2e-89
Identities = 242/273 (89%), Gaps = 4/273 (1%)
Strand=Plus/Plus
Query 1 ATGATCACAAAGAAGATCTTTGGCTTTGTGCTCGCGATCACGATTCTCTTGAGTTGCTGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 28 ATGATCACAAAGAAGATCTTTGGCTTTGTGCTCGCGATCACGATTCTCTTGGGTTGCTGC 87
Query 61 TCGGCGAAAATCTACAAAGTTGGAGGTTCTAGAGGG-TGGAGTGGGAAGACGAACTCTTG 119
||||| ||||| ||||||||||||||||||| | || |||| || ||||| |||||||||
Sbjct 88 TCGGCTAAAATATACAAAGTTGGAGGTTCTA-ATGGATGGACTGCGAAGAAGAACTCTTG 146
Query 120 GGCTGA-GCGTAAGGAATTCCACGTCGGGGATTCTTTGATCTTCCAATACCATCAGAACG 178
|||| | || ||| |||||| | ||||| ||||||||| | || ||||| |||| ||||
Sbjct 147 GGCT-ACGCATAAAGAATTCTATGTCGGAGATTCTTTGGTTTTTGAATACGATCAAAACG 205
Query 179 TTAACGACGTCACTCAACTCTCCGATGCTTTAAAGTACGAGTCATGCAACTCCTCTTCTC 238
||||||||||||||||| |||| ||||||| |||||||||||||||| |||| |||||||
Sbjct 206 TTAACGACGTCACTCAAGTCTCTGATGCTTCAAAGTACGAGTCATGCGACTCTTCTTCTC 265
Query 239 CTAAAGCCGTTTACAATACAGGACATGATGTCA 271
||||||| |||||||| || ||||| |||||||
Sbjct 266 CTAAAGCGGTTTACAACACCGGACACGATGTCA 298
> Ahg343365 jgi|Araly1|343365|fgenesh1_pg.C_scaffold_3003128
Length=1017
Score = 640 bits (346), Expect = 0.0
Identities = 568/668 (85%), Gaps = 44/668 (7%)
Strand=Plus/Plus
Query 259 GGACATGATG-TC-ACGTTTTTGTCGTCCATGAAAAGTCACGTCCGATCCCTCCACCACC 316
|||| ||| | || ||||| |||| |||||||| |||||||||||||| |||||||||||
Sbjct 334 GGAC-TGAAGCTCGACGTTCTTGTTGTCCATGACAAGTCACGTCCGATTCCTCCACCACC 392
Query 317 ACGA---AGCAAGACCCATGAACGGTCACGACCCATTAGCCATTACTCCTTcaccaccac 373
|| | ||||||| |||||||| ||||| | || | |||| | |||||||
Sbjct 393 ACCACCGAGCAAGATCCATGAACCCTCACG------T--CC-GT-CTCC-T--CCACCAC 439
Query 374 caccaag-caagacccatgaacggtcacgacccattactccttcaccaccaccaccaagc 432
|||| | ||||| | |||||| ||||| || | | |||| ||||||||||||| |||
Sbjct 440 CACC-GGCCAAGATCAATGAACCCTCACGTCCGA-T--TCCTCCACCACCACCACCGAGC 495
Query 433 aagacccatgaaccgtcacgtccgaatactcctccaccaccaccaccaccGAG-CAAGAC 491
|||| ||||||||| ||||||||| | ||||| |||||||||||| | |||||
Sbjct 496 AAGATCCATGAACCCTCACGTCCG--T-CTCCT------CCACCACCACCG-GCCAAGAT 545
Query 492 CCATGAACCCTCACGT-CGCATTACTCCTTCACCACCACCACCGAGCAAGATCCTTCCTT 550
| |||||||||||||| || | | |||| ||||||||||||| ||||||||| ||||||
Sbjct 546 CAATGAACCCTCACGTCCG-A-T--TCCTCCACCACCACCACCAAGCAAGATCTTTCCTT 601
Query 551 TTGGTAAGATCTAC-AGAGTTGGTGACTACGGAGGATGGAGCGTTTATTACAGTTACTAC 609
||||||| |||||| || || ||||||| | ||||||||||||||||| |||||||||||
Sbjct 602 TTGGTAAAATCTACAAG-GTAGGTGACTCCAGAGGATGGAGCGTTTATAACAGTTACTAC 660
Query 610 TATTACAAGTGGAGTGAGGGTAAACAGTTTCATGTTGAAGATACTCTCTTTTTCCAATAC 669
|||||||| |||||||| || ||||||||| |||||| |||||||||||||||| |||||
Sbjct 661 TATTACAAATGGAGTGAAGGCAAACAGTTTTATGTTGGAGATACTCTCTTTTTCGAATAC 720
Query 670 AACAAGGAACTCAACGACGTTAGGGAAATCACCGATGAACTTGAGTTCAGATCTTGCGAA 729
|||||| | |||||||||||||||||||||| | |||| ||||| |||| ||||||||||
Sbjct 721 AACAAGTACCTCAACGACGTTAGGGAAATCAGCAATGATCTTGACTTCAAATCTTGCGAA 780
Query 730 TC-GACTTCTACTGTAGCTGTGTACAAAACGGGACACGATCTCATTAAGCTCACTAAACC 788
| || |||||||||||| |||||||| || ||||||||||| |||||||||| |||||
Sbjct 781 -CAGAATTCTACTGTAGCCGTGTACAAGACCGGACACGATCTGGTTAAGCTCACCAAACC 839
Query 789 AGGAGTGCATTATTTTGTAAGCTTAAAGACCGGTCTTTGTCAGGCTGGGATTAAGCTTCG 848
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGGAGTGTATTATTTTGTAAGCTTAAAGACCGGTCTTTGTCAGGCTGGGATTAAGCTTCG 899
Query 849 AGTCACGGTGCAACCATCAACCGAAGCTGTTACTTTCCCGAATGTTCCCAAGAAGAAGTT 908
|||||||||||||||||||| |||||| ||| |||||||||||||||||| |||||||||
Sbjct 900 AGTCACGGTGCAACCATCAAGCGAAGCCGTTCCTTTCCCGAATGTTCCCAGGAAGAAGTT 959
Query 909 GTCACCTA 916
||||||||
Sbjct 960 GTCACCTA 967
Score = 283 bits (153), Expect = 1e-75
Identities = 235/274 (86%), Gaps = 8/274 (3%)
Strand=Plus/Plus
Query 1 ATGATCACAAAGAAGATCTTTGGCTTTGTGCTCGCGATCACGATTCTCTT-GAGTTGCTG 59
||||||||||||||||||||||||||||||||| |||||| |||||||| | ||||||
Sbjct 1 ATGATCACAAAGAAGATCTTTGGCTTTGTGCTCATGATCACAATTCTCTTTGC-TTGCTG 59
Query 60 CTCGGCGAAAATCTACAAAGTTGGAGGTTCTAGAGGG-TGG-AGTGGGAAGACGAACTCT 117
||| |||| || ||||||||| |||||||||| | || ||| | |||||||| |||||||
Sbjct 60 CTCTGCGACAACCTACAAAGTGGGAGGTTCTA-ATGGATGGTA-TGGGAAGAAGAACTCT 117
Query 118 TGGGCTGAGCGTAAGGAATTCCACGTCGGGGATTCTTTGATCTTCCAATACCATCAGAAC 177
|||| || || |||||| ||||||||||| ||| || |||||||| ||||| ||||||||
Sbjct 118 TGGGTTGTGCATAAGGACTTCCACGTCGGAGATACTCTGATCTTCGAATACGATCAGAAC 177
Query 178 GTTAACGACGTCACTCAACTCTCC-GATGCTTTAAAGTACGAGTCATGCAACTCCTCTTC 236
|| |||||||| |||||| ||| | | |||||| |||| ||||||||| |||| |||||
Sbjct 178 GTCAACGACGTTACTCAAGTCTACAGC-GCTTTAGAGTATGAGTCATGCGACTCTTCTTC 236
Query 237 TCCTAAAGCCGTTTACAATACAGGACATGATGTC 270
|||||||||||||||||| || ||||| ||||||
Sbjct 237 TCCTAAAGCCGTTTACAACACCGGACACGATGTC 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34615608636
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5