BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53340.1
Length=1001
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938234 jgi|Araly1|938234|scaffold_502425.1 948 0.0
Ahg934354 jgi|Araly1|934354|scaffold_402342.1 529 2e-149
> Ahg938234 jgi|Araly1|938234|scaffold_502425.1
Length=575
Score = 948 bits (513), Expect = 0.0
Identities = 549/566 (97%), Gaps = 3/566 (1%)
Strand=Plus/Plus
Query 123 AGGGTTTCTGAGATGGCCGAATCGCAAACC---ggtggtggtggtggtggAAGCCATGAG 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 10 AGGGTTTCTGAGATGGCCGAATCGCAAACCGGAGGTGGTGGTGGTGGTGGAAGCCATGAG 69
Query 180 AGTGGCGGTGATCAGAGCCCGAGGTCTTTGAATGTTCGTGAGCAGGACAGGTTTCTTCCG 239
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 70 AGTGGCGGAGATCAGAGCCCGAGGTCGTTGAATGTTCGTGAGCAGGATAGGTTTCTTCCG 129
Query 240 ATTGCTAACATAAGCCGTATCATGAAGAGAGGTTTACCTCTAAATGGCAAAATCGCTAAA 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 130 ATTGCTAACATAAGCCGTATCATGAAGAGAGGTTTACCTCTTAATGGCAAAATTGCTAAA 189
Query 300 GATGCTAAAGAGACTATGCAGGAATGTGTCTCTGAATTCATCAGCTTCGTCACCAGCGAG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 GATGCTAAAGAGACTATGCAGGAATGTGTCTCTGAATTCATCAGCTTCGTCACCAGCGAG 249
Query 360 GCTAGTGATAAGTGCCAAAGAGAGAAAAGGAAGACCATCAATGGAGATGATTTGCTTTGG 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 GCTAGTGATAAGTGCCAGAGAGAGAAAAGGAAGACCATCAATGGAGATGATTTGCTTTGG 309
Query 420 GCTATGGCCACTTTAGGATTCGAAGATTACATCGATCCCCTCAAGGTTTACCTGATGCGA 479
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 310 GCTATGGCCACTCTAGGATTCGAAGAGTACATCGATCCCCTCAAGGTTTACCTGATGCGA 369
Query 480 TATAGAGAGATGGAGGGTGACACTAAAGGATCAGGAAAAGGCGGGGAATCGAGTGCAAAG 539
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 370 TATAGAGAGATGGAGGGTGACACTAAAGGATCAGGAAAAGGCGGGGAATCAAGTGCAAAG 429
Query 540 AGAGATGGTCAACCAAGCCAAGTGTCTCAGTTCTCGCAGGTTCCTCAACAAGGCTCATTC 599
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 430 AGAGATGGTCAACCAAACCAAGTGTCTCAGTTCTCGCAGGTTCCTCAACAGGGCTCATTC 489
Query 600 TCACAGGGTCCTTATGGAAACTCTCAAGGTTCGAATATGATGGTTCAAATGCCGGGCACA 659
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 490 TCACAGGGTCCTTATGGAAACCCTCAAGCTTCGAATATGATGGTTCAAATGCCGGGCACA 549
Query 660 GAGTAGTACTAGGACACTATTCATCA 685
||||||||||||| ||||||||||||
Sbjct 550 GAGTAGTACTAGGGCACTATTCATCA 575
> Ahg934354 jgi|Araly1|934354|scaffold_402342.1
Length=568
Score = 529 bits (286), Expect = 2e-149
Identities = 441/512 (86%), Gaps = 26/512 (5%)
Strand=Plus/Plus
Query 166 gtggAAGCCATGAGAGTGGCGGTGATCAGAGCCCGAGGTCTTTGA-ATGTTCGTGAGCAG 224
||||||||||||||||||| || ||||| || |||||||| || | |||||||||||||
Sbjct 55 GTGGAAGCCATGAGAGTGGTGGAGATCAAAGTCCGAGGTCGTT-ACATGTTCGTGAGCAA 113
Query 225 GACAGGTTTCTTCCGATTGCTAACATAAGCCGTATCATGAAGAGAGGT-TTACCT-CTAA 282
|| |||||||||||||||||||||||||||||||||||||| |||||| || ||| || |
Sbjct 114 GATAGGTTTCTTCCGATTGCTAACATAAGCCGTATCATGAAAAGAGGTCTT-CCTGCT-A 171
Query 283 ATGGCAAAATCGCTAAAGATGCTAAAGAGACTATGCAGGAATGTGTCTCTGAATTCATCA 342
|||||||||| |||||||||||||| |||| | ||||||||||||| |||||||||||||
Sbjct 172 ATGGCAAAATTGCTAAAGATGCTAAGGAGATTGTGCAGGAATGTGTTTCTGAATTCATCA 231
Query 343 GCTTCGTCACCAGCGAGGCTAGTGATAAGTGCCAAAGAGAGAAAAGGAAGACCATCAATG 402
||||| | |||||||| || |||||||| || ||||||||||||||||||||||||||||
Sbjct 232 GCTTCATTACCAGCGAAGCGAGTGATAAATGTCAAAGAGAGAAAAGGAAGACCATCAATG 291
Query 403 GAGATGATTTGCTTTGGGCTATGGCCACTTTAGGATTCGAAGATTACATCGATCCCCTCA 462
||||||||||||||||||| ||||||||||||||||| ||||| ||||| || ||||| |
Sbjct 292 GAGATGATTTGCTTTGGGCAATGGCCACTTTAGGATTTGAAGACTACATGGAACCCCTGA 351
Query 463 AGGTTTACCTGATGCGATATAGAGAGATGGAGGGTGACACTAAAGG-ATCAGGAAAAGGC 521
|||||||||||||| ||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 352 AGGTTTACCTGATGAGATATAGAGAGATGGAGGGTGACAC-AAAGGGATCAGCAAAAGGT 410
Query 522 GGGGAAT-CGAGTGCAAAGAGAGATGGTCAACCAAGCCAAG-TGTCTCAGTTCTCGCAGG 579
||||| | | | |||||||| |||||| || |||||||| || | |||||| ||
Sbjct 411 GGGGA-TGCAAATGCAAAGAAAGATGGGAAATCAAGCCAAAATGGC-CAGTTC--GC--- 463
Query 580 TTCCTCAACAAGGCTCATTCTCACAGGGTCCTTATGGAAACTCTCAAGGTTC-G-A--AT 635
| | | |||||||| || ||||| ||||||||||| |||||||||| | | | | ||
Sbjct 464 T-CA-C--CAAGGCTCTTTTTCACAAGGTCCTTATGGGAACTCTCAAGCT-CAGCAGCAT 518
Query 636 ATGATGGTTCAAATGCCGGGCACAGAGTAGTA 667
|||||||||| ||||||||| ||||| |||||
Sbjct 519 ATGATGGTTCCAATGCCGGGAACAGACTAGTA 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37207966992
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5