BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G53370.1

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg323881 jgi|Araly1|323881|fgenesh1_pm.C_scaffold_5001425           399    9e-111


> Ahg323881 jgi|Araly1|323881|fgenesh1_pm.C_scaffold_5001425
Length=231

 Score =  399 bits (216),  Expect = 9e-111
 Identities = 226/231 (98%), Gaps = 0/231 (0%)
 Strand=Plus/Plus

Query  107  ATGGACGGCGAAGATTTTGCCGGAAAGGCGGCTGCTGAAGCCAAGGGATTGAACCCGGGA  166
            |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1    ATGGACGGTGACGATTTTGCCGGAAAGGCGGCTGCTGAAGCCAAAGGATTGAACCCGGGA  60

Query  167  TTAATCGTGCTGCTTGTTGTTGGAGGTCCGCTTCTTGTGTTCCTAATCGCCAACTACGTG  226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTAATCGTGCTGCTTGTTGTTGGAGGTCCGCTTCTTGTGTTCCTAATCGCCAACTACGTG  120

Query  227  CTTTACGTTTATGCTCAGAAGAACCTACCTCCAAGGAAGAAGAAGCCCGTTTCCAAAAAG  286
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CTTTACGTGTATGCTCAGAAGAACCTACCTCCAAGGAAGAAGAAGCCCGTTTCCAAAAAG  180

Query  287  AAGCTCAAGCGGGAGAAGCTAAAGCAAGGAGTCCCTGTCCCTGGAGAATAA  337
            |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  181  AAGCTCAAGCGGGAGAAGCTCAAGCAAGGAGTCCCTGTCCCTGGAGAATAA  231



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22053930442


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5