BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53380.1
Length=2355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485711 jgi|Araly1|485711|fgenesh2_kg.5__1703__AT3G53380.1 3411 0.0
> Ahg485711 jgi|Araly1|485711|fgenesh2_kg.5__1703__AT3G53380.1
Length=2316
Score = 3411 bits (1847), Expect = 0.0
Identities = 2127/2261 (94%), Gaps = 24/2261 (1%)
Strand=Plus/Plus
Query 41 AAAACATTTCTTCAACTGATCATTAATGTCTCTCTTTCTCTCCTTCTTCATTTCAATCTT 100
|||||||||||||||||||||||||||| || | ||| | ||||||||||||||||||
Sbjct 1 AAAACATTTCTTCAACTGATCATTAATG--TCGC--TCT-T-CTTCTTCATTTCAATCTT 54
Query 101 GCTCTGTTTCTTCAATGGAGCTACGACGACACAGTTTGATTTCTCCACGCTAGCCATAAG 160
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 55 GCTCTGTTTCTTCAATGGAGCTACGACGACACAGTTTGATTTCTCCACGTTAGCCATAAG 114
Query 161 CAACCTCAAACTCCTCGGTGATGCACGTTTAAGCAATGGAATCGTTGGCCTCACACGTGA 220
||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 115 CAACCTCAAACTCATCGGTGATGCTCGTTTAAGTAATGGAATCGTTGGCCTCACACGTGA 174
Query 221 CCTCTCTGTACCTAATTCCGGCGCCGGAAAAGTCTTATACTCTAACCCAATCAGATTCCG 280
||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 175 CCTCTCTGTGCCTAATTCCGGTGCCGGGAAAGTTTTATACTCTAACCCAATCAGATTCCG 234
Query 281 ACAACCTGGAACTCACTTTCCGACAAGCTTCTCTTCTTTTTTCTCCTTCTCTATAACCAA 340
|||||||||||| ||||||||||||||||||||| |||||||||||||||| || |||||
Sbjct 235 ACAACCTGGAACCCACTTTCCGACAAGCTTCTCTACTTTTTTCTCCTTCTCCATTACCAA 294
Query 341 TGTCAACCCTTCTTCCATCGGCGGTGGTCTCGCTTTCGTCATCTCTCCCGACGCAAACTC 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TGTCAACCCTTCTTCCATCGGCGGTGGTCTCGCTTTCGTCATCTCTCCCGACGCAAACTC 354
Query 401 AATCGGCATCGCTGGTGGCTCTCTTGGTCTAACCGGTCCAAACGGTTCCGGTTCAAAATT 460
||||||| |||| |||||||| |||||||| ||||||||||||| ||||||||||||||
Sbjct 355 AATCGGCGTCGCCGGTGGCTCGCTTGGTCTCGCCGGTCCAAACGGGTCCGGTTCAAAATT 414
Query 461 TGTCGCCGTCGAATTCGATACTTTAATGGATGTAGATTTCAAGGACATTAACAGTAACCA 520
||||||||||| || |||||||||||||| || |||||||| |||||||| ||||||||
Sbjct 415 CGTCGCCGTCGAGTTTGATACTTTAATGGACGTGGATTTCAAAGACATTAATAGTAACCA 474
Query 521 TGTTGGATTCGACGTAAATGGCGTAGTTTCCTCTGTTTCCGGTGATCTTGGCACCGTAAA 580
|||||||||||||||||| ||||| |||||||||||||||| |||||||| ||||||||
Sbjct 475 TGTTGGATTCGACGTAAACGGCGTCCTTTCCTCTGTTTCCGGCGATCTTGGTACCGTAAA 534
Query 581 CATCGATCTCAAGAGCGGCAACACCATCAATTCATGGATCGAATACGACGGATTGACTCG 640
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 535 CATCGATCTCAAGAGCGGCAACACCATCAATTCATGGATCGAGTACGACGGATTGACTCG 594
Query 641 GGTCTTCAACGTATCAGTCTCTTACTCAAATCTGAAACCGAAAGTTCCAATTTTGTCTTT 700
||||||||||||||||||||||||||||||||| ||||| |||| ||| |||||||||||
Sbjct 595 GGTCTTCAACGTATCAGTCTCTTACTCAAATCTAAAACCTAAAGCTCCGATTTTGTCTTT 654
Query 701 CCCTCTCGATTTAGATCGATACGTGAACGATTTCATGTTCGTTGGATTCTCCGGGTCAAC 760
||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||
Sbjct 655 CCCTCTCGATTTAGATCAATACGTGAACGATTTCATGTTCGTCGGATTCTCCGGTTCAAC 714
Query 761 TCAGGGAAGTACAGAGATTCACAGTATCGAATGGTGGAGCTTCAGTTCATCATTCGGGTC 820
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 715 TCAGGGAAGTACAGAGATTCACAGTATCGAATGGTGGAGCTTCAGTTCTTCATTCGGGTC 774
Query 821 GAGT-CTCGGATCCGGATCCGGGTCACCTCCTCCTCGGGCTAATTTGATGAATCCGAAAG 879
| || || ||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 775 GGGTCCT-GGATCCGAATCCGGGTCACCTCCTCCGAGGGCTAATTTGATGAATCCGAAAG 833
Query 880 CTAATTCGGTGAAATCTCCGCCGCCGTTGGCGTCACAACCGTCGTCTTCAGCGATTCCGA 939
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 834 CTAATTCGGTGAAATCTCCGCCGCCGTTAGCGTCACAACCGTCTTCTTCAGCGATTCCGA 893
Query 940 TCTCAAGCAACACTCAATTAAAAACTTCGTCGTCGTCGTCTTGCCACAGCCGTTTCTGCA 999
|||||||||||||||||| ||||||||||||||| | ||||||||||||| |||||||
Sbjct 894 TCTCAAGCAACACTCAATCGAAAACTTCGTCGTCG-C--CTTGCCACAGCCGCTTCTGCA 950
Query 1000 AAGAGAATCCCGGAACAATCGCCGGAGTAGTAACCGCCGGAGCTTTCTTCTTAGCACTAT 1059
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 951 AAGAGAATCCGGGAGCAATCGCCGGAGTAGTAACCGCCGGAGCTTTCTTCTTAGCACTTT 1010
Query 1060 TCGCCGGAGCTTTATTCTGGGTTTACTCCAAAAAGTTCAAACGTGTCGAGAGATCTGATT 1119
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1011 TCGCCGGGGCTTTATTCTGGGTTTACTCCAAAAAGTTCAAACGCGTCGAGAGATCTGATT 1070
Query 1120 CATTCGCATCTGAAATCATCAAAGCTCCGAAAGAGTTCAGCTATAAAGAACTCAAAGCCG 1179
| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1071 CTTTCGCATCTGAAATCATCAAGGCTCCTAAAGAGTTCAGCTACAAAGAACTCAAAGCCG 1130
Query 1180 GCACAAAGAACTTCAACGAGAGTCGTATCATCGGACATGGAGCCTTCGGAGTCGTATACA 1239
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1131 GCACAAAGAACTTCAACGAGAGTCGAATCATCGGACACGGAGCCTTCGGAGTCGTTTACA 1190
Query 1240 GAGGAATATTACCGGAGACCGGAGACATCGTCGCCGTCAAACGATGCAGCCATAGCTCAC 1299
|||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 1191 GAGGAATATTACCGGAGAGCGGAGACATCGTCGCCGTCAAACGATGCAGTCACAGCTCAC 1250
Query 1300 AAGACAAAAAGAACGAGTTTTTATCTGAACTATCAATAATCGGAAGCTTAAGACACAGAA 1359
||||||||||||| ||||||||||| ||| |||| |||||||||||||||||||||||||
Sbjct 1251 AAGACAAAAAGAAGGAGTTTTTATCGGAATTATCCATAATCGGAAGCTTAAGACACAGAA 1310
Query 1360 ACCTCGTGAGATTACAAGGATGGTGTCACGAGAAAGGTGAGATTTTGTTAGTCTACGATC 1419
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1311 ACCTCGTTCGATTACAAGGATGGTGTCACGAAAAAGGTGAGATTTTGTTAGTCTACGATC 1370
Query 1420 TAATGCCTAATGGTTCGCTTGATAAAGCTTTGTTTGAGTCACGATTCACGTTACCGTGGG 1479
||||||| ||||| || || |||||||||||||| ||||||||||||||||| |||||||
Sbjct 1371 TAATGCCAAATGGGTCACTCGATAAAGCTTTGTTCGAGTCACGATTCACGTTGCCGTGGG 1430
Query 1480 ATCATCGGAAAAAGATCTTGCTTGGTGTTGCATCTGCTTTAGCTTATTTACATAGAGAGT 1539
|||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1431 ATCACCGGAAAAAGATTTTGCTTGGAGTTGCATCTGCTTTAGCTTATTTACATAGAGAGT 1490
Query 1540 GTGAGAATCAGGTGATTCATAGAGATGTTAAGAGTAGTAATATAATGTTAGATGAGAGTT 1599
||||||||||||||||||| ||||| ||||| || ||||||||||||||||| |||| ||
Sbjct 1491 GTGAGAATCAGGTGATTCACAGAGACGTTAAAAGCAGTAATATAATGTTAGACGAGAATT 1550
Query 1600 TTAATGCCAAGCTTGGAGATTTCGGATTGGCGAGACAGATTGAGCATGATAAGTCGCCGG 1659
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1551 TTAACGCCAAGCTTGGAGATTTCGGATTGGCGAGACAGATTGAGCACGATAAGTCGCCGG 1610
Query 1660 AAGCAACTGTTGCCGCCGGGACGATGGGATATTTAGCGCCGGAGTATCTTCTGACGGGTC 1719
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 1611 AAGCGACTGTTGCTGCCGGGACGATGGGGTATTTAGCGCCGGAGTATCTTCTGACTGGCC 1670
Query 1720 GTGCTTCGGAGAAGACGGATGTGTTTAGTTACGGAGCGGTGGTTTTGGAAGTGGTTAGTG 1779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 GTGCTTCGGAGAAGACGGATGTGTTTAGTTACGGAGCGGTGGTTTTGGAAGTGGTTAGTG 1730
Query 1780 GAAGAAGACCGATTGAGAAGGACTTAAATGTGCAAAGACATAATGTTGGGGTGAATCCGA 1839
|||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||
Sbjct 1731 GAAGAAGACCGATTGAGAAGGACTTAAATGTGCAGAGACAAAATGTTGGGGCAAATCCGA 1790
Query 1840 ATTTAGTAGAATGGGTGTGGGGTTTGTATAAAGAAGGGAAAGTTTCTGCAGCTGCTGATT 1899
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1791 ATTTAGTAGAATGGGTGTGGGGTTTGTATAAAGAAGGGAAAGTTTCTGCAGCGGCTGATT 1850
Query 1900 CTAGGCTTGAAGGTAAGTTTGATGAAGGTGAGATGTGGCGGGTCTTGGTTGTGGGCTTGG 1959
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1851 CTAGGCTTGAAGGTAAGTTTGATGAAGGTGAGATGTGGCGGGTCTTGGTTGTGGGCCTGG 1910
Query 1960 CTTGTTCGCATCCGGATCCAGCATT-TAGGCCCACTATGAGGTCAGTGGTGCAAATGCTG 2018
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1911 CTTGTTCGCATCCGGATCCAGC-TGCTAGGCCCACTATGAGGTCAGTGGTGCAAATGCTG 1969
Query 2019 ATTGGTGAGGCTGATGTACCGGTTGTGCCTAAGTCTAGACCCACCATGAGTTTTAGCACT 2078
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1970 ATTGGTGAGGCTGATGTACCGGTTGTGCCCAAGTCTAGACCTACCATGAGTTTTAGCACT 2029
Query 2079 TCGCATTTGTTGCTGAGTTTGCAAGATACTCTCTCTGATTGTA--A-TACCGTGGCTTTG 2135
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 2030 TCGCATTTGTTGCTGAGTTTGCAAGATACTCTCTCTGATTGTAGTAATACCGTGGCTTTG 2089
Query 2136 AACTCTAGTCGATCGTCTTCGTGGTCGGTGCCCGAACATAACGTTATCATTCGAAGCGAC 2195
|||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2090 AACTCTAGCCGATCGTCGTCGTGGTCTGTGCCGGAACATAACGTTATCATTCGAAGCGAC 2149
Query 2196 GATGACCATTTGGTATAGATATATTGGAGTTG-AACCAAACAGAtgtgttttgtgtgttt 2254
|||||||||||||||||||| | |||||||| ||| ||||||||| |||||||||||||
Sbjct 2150 GATGACCATTTGGTATAGATGTTTTGGAGTTTTAAC-AAACAGATGCGTTTTGTGTGTTT 2208
Query 2255 gatta--ttt-gattt-t-t-gtaatattcaattcattttt 2289
||||| ||| ||||| | | ||||||||||||||||||||
Sbjct 2209 GATTAGATTTTGATTTGTGTTGTAATATTCAATTCATTTTT 2249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88712180605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5