BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53390.1
Length=2252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938238 jgi|Araly1|938238|scaffold_502429.1 2839 0.0
Ahg482705 jgi|Araly1|482705|fgenesh2_kg.4__1765__AT2G37160.1 1563 0.0
> Ahg938238 jgi|Araly1|938238|scaffold_502429.1
Length=1717
Score = 2839 bits (1537), Expect = 0.0
Identities = 1654/1712 (97%), Gaps = 1/1712 (0%)
Strand=Plus/Plus
Query 236 TAGC-AAGCAAACACTATGATGAACACTTCTAATGGAATGATATCAGCGCCATCTTCGTC 294
|||| |||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 5 TAGCAAAGCAAACACTATGATGAACACTTCTAATGGAATGATATCGGCACCATCTTCATC 64
Query 295 GTCTTCACCGGCGGCGAATCCTCAGTCGCCGGGAATTAAGACTTATTTCAAGACGCCTGA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 GTCTTCACCGGCGGCGAATCCTCAGTCGCCGGGAATTAAGACTTATTTCAAGACGCCTGA 124
Query 355 AGGGAAGTATAAGCTTCACTACGAGAAAACGCATTCCTCTGGTCTCCTTCATTACGCACA 414
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 125 AGGGAAGTATAAGCTTCACTACGAGAAAACGCATTCCTCTGGTCTCCTTCACTATGCACA 184
Query 415 TGGCAAAACTGTTACTCAGGTAACTATAGCTCAGCTTAAGGAAAGAGCTGCTCCTTCGAC 474
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 185 TGGCAAAACGGTTACTCAGGTAACTCTAGCTCAGCTTAAGGAAAGAGCTGCTCCTTCTAC 244
Query 475 TCCAACTGGTACTTCGTCGGGTTATAGTGCTAGTAGCGGGTTTCGTTCAGCAACAGCGAG 534
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 245 TCCAACTGGTACTTCGTCGGGTTACAGTGCTAGTAGCGGGTTTCGCTCAGCAACAGCCAG 304
Query 535 GTTGCTAGGAACTGGAAATGGGAGCCGTGCGCTTAGTTTTGTTGGAGGTAATGGTGGCGG 594
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 305 GTTGCTAGGCACTGGAAATGGTAGCCGTGCGCTTAGTTTTGTTGGAGGTAATGGTGGGGG 364
Query 595 TAAAAGTGTGAGTACAAGTTCAAGAATTAGTGGCTCCTTCGCTGCTTCTAATTCTAATAC 654
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||
Sbjct 365 CAAAAGTGTGAGTACAAGTTCAAGAATTAGTGGCTCCTTTGCTCCTTCTAATTCTAGCAC 424
Query 655 TTCGATGACAAATACGAATTTTGATGGGAAAGGAACTTACTTGGTCTTCAATGTGAGTGA 714
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 ATCAATGACAAATACGAATTTTGATGGGAAAGGAACTTACTTGGTCTTCAATGTGAGTGA 484
Query 715 TGCTATTTTTATCTGTGACTTGAACTCACAAGAAAAGGATCCAGTAAAGTCTATCCATTT 774
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 485 TGCTATTTTTATCTGTGACTTGAACTCACAAGACAAGGATCCAGTAAAGTCTATCCATTT 544
Query 775 CAGTAATTCAAACCCTATGTGTCATGCTTTTGATCCGGATGCTAAGGATGGGCATGACTT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 CAGTAATTCAAACCCTATGTGTCATGCTTTTGATCCGGATGCTAAGGATGGGCATGACTT 604
Query 835 ACTTATTGGGCTGAATTCTGGGGATGTGTACACAGTATCACTGAGACAGCAGTTACAGGA 894
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 605 ACTTATTGGGCTGAATTCTGGGGATGTGTACACAGTATCACTGAGACAGCAATTACAGGA 664
Query 895 CGTCTCTAAGAAGCTAGTTGGTGCTCTGCATTATAACAAGGACGGTTCTGTGAATAACAG 954
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 665 CGTCTCTAAGAAGCTAGTTGGTGCACTGCATTATAACAAGGACGGTTCTGTGAATAACAG 724
Query 955 TCGTTGCACTAGTATTTCTTGGGTGCCTGGAGGTGATGGAGCATTTGTCGTTGCTCATGC 1014
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TCGTTGTACTAGTATTTCTTGGGTGCCTGGAGGTGATGGAGCATTTGTCGTTGCTCATGC 784
Query 1015 CGATGGCAATTTGTATGTGTATGAGAAGAACAAAGATGGTGCCACTGAATCAACATTTCC 1074
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 785 CGATGGCAATTTGTACGTGTATGAGAAGAACAAAGATGGTGCCACTGAGTCAACATTTCC 844
Query 1075 TGCTATAAGAGATCCTACACAATTTTCAGTTGACAAGGCAAAATATAGCAAGAGTAATCC 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 TGCTATAAGAGATCCTACACAATTTTCAGTTGACAAGGCAAAATATAGCAAGAGTAATCC 904
Query 1135 TGTTGCGAGATGGCATATATGTCAAGGTTCAATTAACAGCATTGCATTCTCAAATGATGG 1194
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 905 TGTTGCGAGATGGCATATATGTCAAGGTTCAGTTAACAGCATTGCATTCTCAAATGATGG 964
Query 1195 GGCACACTTGGCAACTGTTGGAAGAGATGGCTATCTTCGCATTTTTGACTTCTTAACCCA 1254
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 GGCACACTTGGCGACTGTTGGAAGAGATGGCTATCTTCGCATTTTTGACTTCTTAACCCA 1024
Query 1255 GAAGCTAGTATGTGGTGGAAAAAGTTATTATGGTGCTCTGCTGTGCTGTTCTTGGAGTAT 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 GAAGCTAGTATGTGGTGGAAAAAGTTATTATGGTGCTCTGCTGTGCTGTTCTTGGAGTAT 1084
Query 1315 GGATGGAAAGTACATTTTGACTGGAGGTGAAGATGATTTAGTTCAAGTGTGGAGTATGGA 1374
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1085 GGATGGAAAGTACATTTTGACTGGAGGTGAAGATGACCTAGTTCAAGTGTGGAGTATGGA 1144
Query 1375 GGATCGGAAAGTTGTGGCGTGGGGTGAGGGACATAATTCGTGGGTAAGTGGAGTAGCGTT 1434
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1145 TGATCGGAAGGTTGTGGCGTGGGGTGAGGGACATAATTCGTGGGTAAGCGGAGTAGCGTT 1204
Query 1435 TGATTCCAATTGGTCGTCACCAAACTCGGATGGGTCAGGAGAGCATGTCATGTACCGTTT 1494
||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1205 TGATTCCTATTGGTCGTCACCAAATTCAGATGGGTCAGGAGAGCATGTCATGTACCGTTT 1264
Query 1495 TGGATCAGTTGGTCAGGACACACAGTTACTTCTCTGGGACCTTGAGATGGACGAGATCGT 1554
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 CGGATCAGTTGGACAGGACACACAGTTACTTCTCTGGGACCTTGAGATGGACGAGATCGT 1324
Query 1555 AGTTCCACTTAGGCGAGCTCCAGGAGGATCTCCAACTTACAGCACAGGAAGCTCAGCTCA 1614
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1325 AGTTCCACTTAGGCGAGCTCCAGGTGGGTCTCCAACTTACAGCACAGGAAGCTCAGCTCA 1384
Query 1615 CTGGGACAATGTCATACCAATGGGAACTCTTCAACCGGCTCCTTGCAAACGCGATGTTCC 1674
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1385 CTGGGACAATGTCATACCAATGGGAACTCTTCAACCCGCTCCTTGCAAACGAGATGTTCC 1444
Query 1675 AAAGCTGTCACCGATCATAGCACACCGAGTTCACACAGAGCCCCTCTCTGGCTTGATGTT 1734
|||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1445 AAAGCTCTCACCGATCATAGCTCACCGAGTTCACACTGAGCCCCTCTCTGGATTGATGTT 1504
Query 1735 CACACAAGAATCAGTCGTTACGGCTTGTCGAGAAGGCCATATAAAGATCTGGACACGGCC 1794
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1505 CACACAAGAATCAGTCGTTACGGCTTGCCGAGAAGGCCATATAAAGATCTGGACACGGCC 1564
Query 1795 CAGTGAATCAGAAACCCAAACTAACAGCTCAGAAGCAAATCCTACAACTGCCCTCTTGAG 1854
||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||
Sbjct 1565 CAGCGAATCAGAAACCCAATCCAACAGCTCAGAAGCAAATCCTACAAGTGCCCTCTTGAG 1624
Query 1855 CACAAGCTTCACGAAAGACAACAAAGCTTCACTGAGCAGCAAGATCATCAGTGGCTCTAC 1914
|||||||||||| |||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 1625 CACAAGCTTCACAAAAGACAACAAAGCCTCACTGAGCAGCAAGATCATCGGTGGTTCTAC 1684
Query 1915 TTTCAAGCAATGACAGAGAGATGCTACTTGTC 1946
|||||||||||||| |||||||||||||||||
Sbjct 1685 TTTCAAGCAATGACGGAGAGATGCTACTTGTC 1716
> Ahg482705 jgi|Araly1|482705|fgenesh2_kg.4__1765__AT2G37160.1
Length=2101
Score = 1563 bits (846), Expect = 0.0
Identities = 1328/1559 (85%), Gaps = 40/1559 (3%)
Strand=Plus/Plus
Query 250 TATGATGAACACTTCTAATGGAATGATATCAGCGCCATCTTCGTCGTCTTCACCGGCGGC 309
|||||||||| |||| ||||| ||||| || ||| | |||| | |||| || | ||
Sbjct 126 TATGATGAACTCTTCGAATGGCATGATCTCTGCG-C--CTTC-T--TCTT---CGTCTGC 176
Query 310 GAATCCTCAGTCGCCGGGAATTAAGACTTATTTCAAGACGCCTGAAGGGAAGTATAAGCT 369
|||||||||||| |||||||| || || |||||||||||||||||||||||||| |||||
Sbjct 177 GAATCCTCAGTCTCCGGGAATCAAAACGTATTTCAAGACGCCTGAAGGGAAGTACAAGCT 236
Query 370 TCACTACGAGAAAACGCATTCCTCTGGTCTCCTTCATTACGCACATGGCAAAACTGTTAC 429
||||||||||| |||||| ||||||| || ||||| || | ||||||||||| || ||
Sbjct 237 CCACTACGAGAAGACGCATCCCTCTGGGCTTCTTCACTATACTCATGGCAAAACCGTCAC 296
Query 430 TCAGGTAACTATAGCTCAGCTTAAGGA-AAGAGCTGCTCCTTCGACTCCAACTGGTACTT 488
|||||| ||| ||||||| |||||||| || | ||||||| ||||| ||||||||||| |
Sbjct 297 TCAGGTTACTCTAGCTCACCTTAAGGATAA-ACCTGCTCCATCGACACCAACTGGTACCT 355
Query 489 CGTCGGGTTATAGTGCTAGTAGCGGGTTT-CGTTCAGCAACAGCGAGGTTGCTAGGAACT 547
| || |||| | |||||||||| ||||| || ||||||||||| |||||| | || |
Sbjct 356 CCTCAAGTTACACTGCTAGTAGC-GGTTTCCGGTCAGCAACAGCAAGGTTGTTGGGTGGT 414
Query 548 GGAAATGGGAGCCGTGCGCTTAGTTTTGTTGGAGGTAATGGTGGCG-GTAAAAGTGTGAG 606
|| ||||| | |||||||||||||||||||||| ||||||| || | |||| |||| |
Sbjct 415 GGGAATGGTAACCGTGCGCTTAGTTTTGTTGGAAGTAATGGAGG-GACCAAAAATGTGGG 473
Query 607 TACAAGTTCAAGAATTAGTGGCTCCTTCGCTGCTTCTAATTCTAATACTTC-GATGACAA 665
| |||||||||||||| ||| ||||||| ||||||||| ||||| ||| || | | || |
Sbjct 474 TGCAAGTTCAAGAATTGGTGCCTCCTTCCCTGCTTCTAGTTCTAGTACCTCGGCT-ACTA 532
Query 666 ATACGAATTTTGATGGGAAAGGAACTTACTTGGTCTTCAATGTGAGTGATGCTATTTTTA 725
|||| ||||| ||||||| |||||||||||| |||||||||||| |||| ||||||||||
Sbjct 533 ATACAAATTTCGATGGGAGAGGAACTTACTTAGTCTTCAATGTGGGTGACGCTATTTTTA 592
Query 726 TCT-GTGACTTGAACTCACAAGAAAAGGATCCAGTAAAGTCTATCCATTTCAGTAATTCA 784
| | ||||||||||||||||||| |||||||||||||||||||| ||| |||| |||||
Sbjct 593 T-TAGTGACTTGAACTCACAAGACAAGGATCCAGTAAAGTCTATACATATCAGCAATTCG 651
Query 785 AACCCTATGTGTCATGCTTTTGATCCGGATGCTAAGGATGGGCATGACT-TACTTATTGG 843
||||||||||| || || |||||||| |||||||||||||| ||||| | ||||||||||
Sbjct 652 AACCCTATGTGCCACGCATTTGATCCAGATGCTAAGGATGGACATGA-TCTACTTATTGG 710
Query 844 GCTGAATTCTGGGGATGTGTACACAGTATCACTGAGACAGCAGTTACAGGACGTCTC-TA 902
|||||||||||||||||| ||||| |||||||| ||||| ||||| ||||| || | ||
Sbjct 711 GCTGAATTCTGGGGATGTCTACACGGTATCACTAAGACAACAGTTGCAGGATGT-TGGTA 769
Query 903 AGAAGCTAGTTGGTGCTCTGCATTATAACAAGGACGGTTCTGTGAATAACAGTCGTTGCA 962
||||||| ||| |||||| |||||||||||| || |||||||| |||||||| || || |
Sbjct 770 AGAAGCTTGTTAGTGCTCAGCATTATAACAAAGATGGTTCTGTAAATAACAGCCGCTGTA 829
Query 963 CTAGTATTTCTTGGGTGCCTGGAGGTGATGGAGCATTTGTCGTTGCTCATGCCGATGGCA 1022
||||||| ||||||||||||||||||||||| | ||||| | ||||||||||||||| |
Sbjct 830 CTAGTATCGCTTGGGTGCCTGGAGGTGATGGATCCTTTGTTGCTGCTCATGCCGATGGAA 889
Query 1023 ATTTGTATGTGTATGAGAAGAACAAAGATGGTGCCACTGAATCAACATTTCCTGCTATAA 1082
||||||| || ||||||||||| ||||| ||||| ||||| || ||||| |||||||||
Sbjct 890 ATTTGTACGTATATGAGAAGAATAAAGAAGGTGCAACTGATTCTTCATTTTCTGCTATAA 949
Query 1083 GAGATCCTACACAATTTTCAGTTGACAAGGCAAAATATAGCAAGAGTAATCCTGTTGCGA 1142
| ||||||||||||||||||||||| || ||||||||||||||||||||||| || || |
Sbjct 950 GGGATCCTACACAATTTTCAGTTGATAAAGCAAAATATAGCAAGAGTAATCCAGTAGCAA 1009
Query 1143 GATGGCATATATGT-CAAGGTTCAATTAACAGCATTGCATTCTCAAATGATGGGGCACAC 1201
|||||||||| || |||||| | ||||| |||||||||| ||||||||||| ||| ||
Sbjct 1010 GATGGCATAT-TGGGCAAGGTGCGATTAATTGCATTGCATTTTCAAATGATGGAGCATAC 1068
Query 1202 TTGGCAACTGTTGGAAGAGATGGCTATCTTCGCATTTTTGACTTCTTAACCCAGAAGCTA 1261
||||||||||||||||||||||| |||||||| |||||||| |||| |||||| ||||||
Sbjct 1069 TTGGCAACTGTTGGAAGAGATGGTTATCTTCGAATTTTTGATTTCTCAACCCAAAAGCTA 1128
Query 1262 GTATGTGGTGGAAAAAGTTATTATGGTGCTCTGCTGTGCTGTTCTTGGAGTATGGATGGA 1321
|| ||||||| ||||||||||||||||||||| |||| ||| |||||||||||||||||
Sbjct 1129 GTGTGTGGTGTAAAAAGTTATTATGGTGCTCTATTGTGTTGTGCTTGGAGTATGGATGGA 1188
Query 1322 AAGTACATTTTGACTGGAGGTGAAGATGATTTAGTTCAAGTGTGGAGTATGGAGGATCGG 1381
|||||| |||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 1189 AAGTACCTTTTGACTGGAGGTGAAGATGACTTGGTTCAAGTGTGGAGTATGGAAGATCG- 1247
Query 1382 AAAG-TTGTGGCGTGGGGTGAGGGACATAATTCGTGGGTAAGTGGAGTAGCGTTTGATTC 1440
|||| |||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 1248 AAAGGTTGTGGCGTGGGGTGAGGGACACAATTCGTGGGTAAGTGGTGTGGCGTTTGATTC 1307
Query 1441 CAATTGGTCGTCACCAAACT-CGGATGGGTCAGGAGAGCATGTCATGTACCGTTTTGGAT 1499
|||||||||||||||| | | || ||||| || ||| |||||||||| || ||||| |
Sbjct 1308 GTATTGGTCGTCACCAAA-TACAGAGGGGTCTGGTGAGAATGTCATGTATCGGTTTGGTT 1366
Query 1500 CAGTTGGTCAGGACACACAGTTACTTCTCTGGGACCTTGAGATGGACGAGATCGTAGTTC 1559
| ||||||||||||||||||||||| || |||||||| || ||||| ||||| || ||||
Sbjct 1367 CCGTTGGTCAGGACACACAGTTACTGCTATGGGACCTAGAAATGGATGAGATTGTTGTTC 1426
Query 1560 CACTTAGGCGAGCTCCAGGAGGATCTCCAACTTACAGCACAGGAAG-C--TCAGCTCACT 1616
| ||| ||||| ||||||||||||| || |||||||||||||| || | || |||||||
Sbjct 1427 CCCTTCGGCGACCTCCAGGAGGATCGCCCACTTACAGCACAGGGAGTCAATCCGCTCACT 1486
Query 1617 GGGACAATGTCATACCAATGGGAACTCTTCAACCGGCTCCTTGCAAACGCGATGTTCCAA 1676
||||||| | | |||||||| |||||||| || || || |||| ||||| || ||||
Sbjct 1487 GGGACAACATTGTTCCAATGGGCACTCTTCAGCCAGCGCCGTGCATGCGCGACGTCCCAA 1546
Query 1677 AGCTGTCACC-GATCA-TAGCACACCGAGTTCACACAGAGCCCCTCTCTGGCTTGATGTT 1734
|||| ||||| | | | | || ||||| |||||||| ||||||||||| |||||||| ||
Sbjct 1547 AGCTCTCACCAG-T-AGTGGCTCACCGTGTTCACACCGAGCCCCTCTCGGGCTTGATCTT 1604
Query 1735 CACACAAGAATCAGTCGTTA-CGGCTTGTC-GAGAAGGCCATATAAAGATCTGGACACG 1791
||| ||||||||| | | || | ||||| | ||||||||||| ||||||||||||||||
Sbjct 1605 CACGCAAGAATCATT-GATAACAGCTTG-CAGAGAAGGCCATTTAAAGATCTGGACACG 1661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84788885370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5