BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53402.1
Length=2030
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938240 jgi|Araly1|938240|scaffold_502431.1 2143 0.0
> Ahg938240 jgi|Araly1|938240|scaffold_502431.1
Length=1438
Score = 2143 bits (1160), Expect = 0.0
Identities = 1327/1408 (94%), Gaps = 9/1408 (1%)
Strand=Plus/Plus
Query 419 TATGGGCTTTGAGGTGTTGAAGCTGAAATTGATGCCTAGTTCATTCCGTCGGCGCGTCAT 478
||||||| ||||| ||||||| |||||| |||||||||| ||||||||||||||||| ||
Sbjct 20 TATGGGCGTTGAGATGTTGAAACTGAAACTGATGCCTAGCTCATTCCGTCGGCGCGTGAT 79
Query 479 CTTACGCGCCCTCGTGATCGTCTGCGCTTTCTCTGTTGTATCTGTTTTGCGAAACCTCGC 538
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 80 CTTACGCGCCCTCGTGATCGTTTGCGCTTTCTCTGTTGTATCTGTTTTGCGAAACCTCGG 139
Query 539 CGGAGCTTACGAAGGAGAGACTATTAATAATACTCAGCCGTGTAAGGTTGATGAATGCGC 598
||||||||| |||||||||| || |||||| |||||||| ||||||||||||||||||||
Sbjct 140 CGGAGCTTATGAAGGAGAGAATAGTAATAACACTCAGCCATGTAAGGTTGATGAATGCGC 199
Query 599 CGTGAATTTCGCGTTTCTAGGTCCGTTTCTTTTCTCAGGTAACGGATTGTTGTTCTCCAA 658
|||||||||||||||||| |||||||| || |||||||| |||||| || || |||||
Sbjct 200 CGTGAATTTCGCGTTTCTGGGTCCGTTCCTCTTCTCAGGCAACGGA---TTATTATCCAA 256
Query 659 TAGATTCTTGAAACCTGTTTGGAACTATTTGGAATCTGACAAATGTAAGGACAACATTTA 718
|| |||||||||||||||| |||||||||||| || || ||||||||||| ||||||||
Sbjct 257 CAGGTTCTTGAAACCTGTTTTGAACTATTTGGAGTCGGAGAAATGTAAGGAAAACATTTA 316
Query 719 TTTGACTACTCAAGTTGTCAGAGAGCTTACTGGTATGAATCTGCTGAGTAATGATTCAAA 778
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 317 TTTGACTACTGAAGTTGTCAGAGAGCTTACTGGTATGAATCTGCTGAGTAATGATTCGAA 376
Query 779 AGCTCTCTGTATTGGTCGGAGATCGGTTTCAGCTGTTCTTGCGATGAATCGACAAGGGAT 838
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 377 TGCTCTCTGTATTGGTCGGAGATCGGTTTCAGCTGTTCTTGCAATGAATCGACAAGGGAT 436
Query 839 CTCTGATGTTAGTGTGGCTTATATGCCACCTGTTTTCGCTTTCAAGCATAGGAAGTTCAC 898
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 437 CTCTGATGTTAGTGTGGCTTATATGCCACCGGTTTTCGCTTTCAAGCATAGGAAGTTCAC 496
Query 899 AAGTGAGCTACATTATGAGGATGCTTCTTTTGGTTTTGTGTTTTCTATGGATCTTGAGTC 958
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 497 AAGTGAGCTACATTATGAGGATGCTTCTTTTGGCTTTGTGTTTTCTATGGATCTTGAGAC 556
Query 959 AGTTGCTGTCCCTGCTTCACTTGTTTATGAGATCGAGCGTATACTTAAGCCCGGTGGAAC 1018
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 557 AGTTGCTGTCCCTGCTTCACTTGTTTATGAGATTGAGCGTATACTTAAGCCTGGTGGAAC 616
Query 1019 TGGGGCTATGCTTGTCGGTACTACTAGTGGGTCTGACTCTAACGAGTTGGTTAGATCCGT 1078
|||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| ||
Sbjct 617 CGGGGCTATGCTTGTGGGTACTATTAGTGGGTCTGACTCTAACGAGTTGGTCAGATCGGT 676
Query 1079 TTCGCCTGTTTCTTCATTGCTGAAGAACTCAAGTGTTGTTCATGTTGCTTCATTGGGTAA 1138
|||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |
Sbjct 677 TTCGCCTGTTTCTTCATTGCTGAAGAACTCGAGTGTGGTTCATGTTGCTTCCTTGGGTGA 736
Query 1139 ACAGGTTTTGGTTGTATTCAA-AAGAGATGGAGAAGATAGTTTCCGCTTGGATCAAACTC 1197
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 737 ACAGGTTTTGGTTGTGTTCAAGAA-AGATGGAGAAGATAGTTTCCGCTTGGATCAAACTC 795
Query 1198 ATCATGACTTTCCTGCTGATTGCTCGTCTGTTCTCAACAACCGGCCATACATTGGATTAT 1257
|||||||| |||| |||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 796 ATCATGACCTTCCGGCTGATTGCTCGTCCGTTCTCAACAACCTACCATACATTGGATTAT 855
Query 1258 TGGAGCCTCTTCTGGATGAAAAACGTTCGGATTTCGAGAGACGGATTCATTACTTGCCTG 1317
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 856 TGGAGCCTCTTCTGGAGGAAAAACGTTCGGATTTCGAGAGACGGATTCATTACTTGCCCG 915
Query 1318 AGTTCATTGATCTCTCTTCTAGGAAGAGGCTGGTTTATATTGATATCGGGGCAGTGGATC 1377
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct 916 AGTTCATTGATCTCTCTTCTCGGAAGCGGCTGGTTTATATTGATATCGGGGCAGCGGATC 975
Query 1378 ATGTGAAAGCAAGATCGAACTGGTTCTTCCCATCGTACCCGATTGATAGGAAAGCTTTTA 1437
|||||||||| || |||||||||||||||||||||||||| || || |||||||||||||
Sbjct 976 ATGTGAAAGCGAGGTCGAACTGGTTCTTCCCATCGTACCCAATCGACAGGAAAGCTTTTA 1035
Query 1438 ATAGCTACTTTGTGCATCACAACACATCTATCTTGACTTCTTATGTCAAAAGCCCTGGTG 1497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1036 ATAGCTACTTTGTGCATCACAACACATCTATCTTGACTTCTTATGTCAAAAGCCCTGGCG 1095
Query 1498 TAACCTTCATCTATCATCCAGGACTCGCAGCAACTAAAACTACAATAGCCAATACC-GGA 1556
||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 1096 TAACCTTCATCTATCATCCAGGACTCGCAGCAACTAAAACTACAATAGCCAGT-CTTGGA 1154
Query 1557 GATCACGAAGAACCTTTTGTGGAAGATGATAGCTTTGATTTTCTAGCATGGTTCAAGGAA 1616
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 GATCAAGAAGAACCTTTTGTGGAAGATGATAGCTTTGATTTTCTAGCATGGTTCAAGGAA 1214
Query 1617 ACTGCTAGCTTCGCTGATTTTGTGGTTCTGAAGATGAACACAAGCGATACTGAGCTGAAG 1676
|| || ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1215 ACAGCGAGCTTCGCTGATTTTGTTGTTCTGAAGATGAACACAAGCAATACTGAGCTGAAG 1274
Query 1677 TTTCTCTCAGAGCTGATAAAGACAGGAGCT-ATCTGCTCAGTTGATGAACTGTTTCTTCA 1735
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1275 TTTCTCTCAGAGCTGATAAAGACAGGAG-TGATCTGCTCAGTTGATGAACTGTTTCTTCA 1333
Query 1736 CTGCACAGGCTACAGCGACTGCACCGGTATCATTAAAAGCCTCAGAAACAGTGGCGTCTT 1795
||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1334 CTGCACAGGCTACAGAGACTGCACTGGTATCTTTAAAAGCCTCAGAAACAGTGGCGTCTT 1393
Query 1796 TGTCCATCAATGGTGGGAAGACTAATAA 1823
||||||||| ||||||||||||||||||
Sbjct 1394 TGTCCATCAGTGGTGGGAAGACTAATAA 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76332850980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5