BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53410.1
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938241 jgi|Araly1|938241|scaffold_502432.1 1306 0.0
> Ahg938241 jgi|Araly1|938241|scaffold_502432.1
Length=952
Score = 1306 bits (707), Expect = 0.0
Identities = 876/956 (92%), Gaps = 17/956 (2%)
Strand=Plus/Plus
Query 35 CAATTTCGCAAAGTTGGATCATGGGCAATGTCATAAGCGGTGGAAGCCGCCCGGAAAATC 94
||||||||||||| ||||||||||||||| ||||||||||||| |||||||| || |||
Sbjct 1 CAATTTCGCAAAGGTGGATCATGGGCAATTTCATAAGCGGTGGTAGCCGCCCCCAATATC 60
Query 95 ATCGGGACCGTAC-TTCGCCGCCGTATCCAAACCCTAATGCTCAGTACCAAGGCAATTAT 153
| || |||| | | ||||||||| ||||||||||||| |||||| | |||||||||||
Sbjct 61 ACCGAGACCAT-CAATCGCCGCCGCCTCCAAACCCTAATCCTCAGTTCGAAGGCAATTAT 119
Query 154 CCGTCGCCGT------A-C--CAAGATTGTGCTAGGTATCCGTATGGAGAGATGGCGTCT 204
|| | ||||| | | |||||||||||||||||||| ||||| ||||||||||||
Sbjct 120 CCTTTGCCGTACCACCACCAACAAGATTGTGCTAGGTATCCTTATGGGGAGATGGCGTCT 179
Query 205 CCAGTGCAATACGTAGAGCATCAGGAAGCAGTGACTATAAGGAACGACATCAATCTGAAG 264
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 180 CCGGTGCAATACGTAGAGCACCAGGAAGCAGTGACTATAAGGAACGACATCAATTTGAAG 239
Query 265 AAAGAAACTTTGAGACTTGAGCCTGATGAACAGAACCCTGGCAAGTTTTTGCTCTCCTTC 324
|||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 240 AAAGAAACCTTGAGATTTGAGCCTGATGAACAAAACCCTGGCAAGTTTTTGCTCTCCTTC 299
Query 325 ACTTTTGACGCCTCTGTTCCTGGAAGCATCACTGTAATGTTCTTTGCTAAAGAAGGCAAA 384
|||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 300 ACTTTTAACGCCTCTGTTCCTGGAAGCATCTCTGTGATGTTCTTTGCTAAAGAAGGCAAA 359
Query 385 GACTGTAACCTTATTGCGACAAAGGAGGATCTTTTTCCATCCACTCA-AGTTAGTTTTGC 443
|| |||||| ||| |||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 360 GAGTGTAACTTTAATGCGACAAAGGAGGATCTGTTTCCATCCAC-GACTGTTAGTTTTGC 418
Query 444 AAAAGGTCTGGAACAGAGATTCAAGCAGGCTTGTGGGACAGGGATTGATTTCTCAGATAT 503
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct 419 AAAAGGTATGGAACAGAGATTCAAGCAGGCTTGTGGAACAGGGATTGATTTCTCAGCTTT 478
Query 504 GTCAGAGG-CAGATTTGGTTGAGGCAAACGAGACAGATGTGTATCATGTGGCAGTGAAAG 562
||||| || |||||||||||||||||| |||||||||||| |||||||||||||||| ||
Sbjct 479 GTCAG-GGACAGATTTGGTTGAGGCAAGCGAGACAGATGTTTATCATGTGGCAGTGATAG 537
Query 563 CAGAGGTAGTATCAGAAGATGATCATCCTGAGTCTGGGACACCAAACAGACAGATAACTC 622
|||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||
Sbjct 538 CAGAGGTAGTATCAGAAGATGATCATTCTGAGTCTGAGACACTAAACAGACAGATAACTC 597
Query 623 ATGTGGTTTTAGAGAAAGATCATAAGGGTGAGTACAAGGCGAGAGTGGTGAAGCAGATCC 682
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 598 ATGTGGTTTTAGAGAAAGATCATAAGGGTGAATACAAGGCGAGAGTGGTCAAGCAGATCC 657
Query 683 TGTGGGTGAATGGGAATAGGTATGTTCTTCAAGAGATTTATGGGATTGGTAATACAGTTG 742
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 658 TGTGGGTGAATGGGAAAAGGTATGTTCTTCAAGAGATTTATGGGATTGGTAGTACAGTTG 717
Query 743 ATGATAATGGAGAAGATGCGAATGAAAGAGGAAAAGAATGCGTCATCTGCTTATCTGAGC 802
|||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||
Sbjct 718 ATGATAATGGAGAAGATGCGAACGAGAGAGGAAAAGAATGTGTCATCTGCTTATCGGAGC 777
Query 803 CACGGGATACCACTGTTCTCCCTTGCAGGCACATGTGTATGTGTAGCGGTTGTGCAAAGC 862
|||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 778 CACGAGACACTACTGTTCTCCCATGCAGGCACATGTGTATGTGTAGCGGTTGTGCAAAGC 837
Query 863 TTTTGAGGTTTCAGACAAACCTCTGCCCCATCTGTAGACAACCGGTGGATAGGCTTTTGG 922
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 838 TTTTGAGGTTTCAGACAAACCTCTGTCCCATCTGTAGACAACCGGTGGATAGGCTTTTGG 897
Query 923 AGATAACAGTGAACAACA-ACGACAGGAACTAGTGAGCCTTGCTACGTTACTCTTC 977
|||||||||| |||| | | ||||||||| ||||||| |||||||||| ||||||
Sbjct 898 AGATAACAGTCAACA-CTGATGACAGGAACCAGTGAGCTTTGCTACGTTGCTCTTC 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43955723301
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5