BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53420.1
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485715 jgi|Araly1|485715|fgenesh2_kg.5__1707__AT3G53420.1 1777 0.0
Ahg482707 jgi|Araly1|482707|fgenesh2_kg.4__1767__AT2G37170.1 839 0.0
Ahg934366 jgi|Araly1|934366|scaffold_402354.1 568 5e-161
Ahg491143 jgi|Araly1|491143|fgenesh2_kg.7__576__AT4G35100.1 418 6e-116
Ahg485893 jgi|Araly1|485893|fgenesh2_kg.5__1885__AT3G54820.1 403 2e-111
> Ahg485715 jgi|Araly1|485715|fgenesh2_kg.5__1707__AT3G53420.1
Length=1272
Score = 1777 bits (962), Expect = 0.0
Identities = 1208/1318 (92%), Gaps = 52/1318 (4%)
Strand=Plus/Plus
Query 20 AAAATACAAACTTTCATTCcaaaaaaaaacctcaata-cacaaaaaaccaaa-aaaacat 77
|||||||||||| |||||||||||||||| || || || |||||| |||| |||| ||
Sbjct 1 AAAATACAAACTCTCATTCCAAAAAAAAAACT---TAGCATAAAAAA-CAAAGAAAA-AT 55
Query 78 ataacgttggcaaaaatactaaaaatattttttaaaagataaagcaataaaaaagtatac 137
||||||||||||||||||||||||| | ||| | | ||||| |||
Sbjct 56 ATAACGTTGGCAAAAATACTAAAAACA---TTT------T-------T-AAAAA-TAT-- 95
Query 138 aaacaaattaacaagAAGGAGAGCTCTCACTATAAAACAGAGCACATGTTCTTCTCACTA 197
||| || ||| || ||| | | | ||| | |||||||||||||||||||| ||||||
Sbjct 96 -AAC-AA-TAA-AA-AAGTATA---CACACAAAAAAACAGAGCACATGTTCTTATCACTA 147
Query 198 ACCACTCCAACAGAGAAGCAAAAGaaaaaaaaGCTATTGTTTGAAAGAAGAAGAAGTTAA 257
|||||| ||||||||||||||||| ||||||||||| |||||| | ||||||||| |||
Sbjct 148 ACCACT-CAACAGAGAAGCAAAAG-AAAAAAAGCTACTGTTTG--A-AAGAAGAAGCTAA 202
Query 258 CTATGGCAAAGGATGTGGAAGCCGTTCCCGGAGAAGGATTTCAGACAAGAGACTATCAAG 317
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 203 ATATGGCGAAGGATGTGGAAGCCGTTCCCGGAGAAGGATTTCAGACAAGAGACTATCATG 262
Query 318 ATCCGCCACCAGCTCCGTTTATTGATGGAGCGGAGCTAAAGAAGTGGTCTTTCTACAGAG 377
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 263 ATCCGCCGCCAGCTCCGTTTATTGATGGAGCGGAGCTAAAGAAGTGGTCTTTTTACAGAG 322
Query 378 CAGTTATCGCAGAGTTCGTAGCCACTCTCCTCTTCTTATACATCACCGTTTTGACAGTCA 437
|||| ||||| ||||||||||| |||||||||||||||||| ||||||||||||| ||||
Sbjct 323 CAGTCATCGCCGAGTTCGTAGCTACTCTCCTCTTCTTATACGTCACCGTTTTGACTGTCA 382
Query 438 TCGGTTACAAGATTCAGTCCGATACTGATGCCGGTGGCGTAGATTGCGGCGGAGTTGGAA 497
|||||||||||||||||||||||||| | ||||| || ||||| ||||||||||||||||
Sbjct 383 TCGGTTACAAGATTCAGTCCGATACTAAGGCCGGCGGGGTAGACTGCGGCGGAGTTGGAA 442
Query 498 TCCTCGGTATCGCTTGGGCCTTTGGTGGTATGATCTTCATCCTCGTCTACTGCACCGCCG 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 TCCTCGGTATCGCTTGGGCCTTTGGTGGTATGATCTTCATCCTCGTCTACTGCACCGCCG 502
Query 558 GTATCTCTGGTGGTCACATTAACCCAGCGGTGACATTTGGGCTATTCTTGGCACGTAAAG 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GTATCTCTGGTGGTCACATTAACCCAGCGGTGACATTTGGGCTATTCTTGGCACGTAAAG 562
Query 618 TGTCGTTACCTAGGGCCCTATTGTACATAATCGCTCAGTGTTTGGGTGCGATTTGTGGAG 677
||||||| ||||||||| |||||||||| | ||||||||||||||||||||||||||||
Sbjct 563 TGTCGTTGCCTAGGGCCATATTGTACATTGTGGCTCAGTGTTTGGGTGCGATTTGTGGAG 622
Query 678 TTGGTTTTGTCAAAGCCTTCCAAAGCTCTTACTAC-ACCCGTTACGGAGGTGGAGCCAAC 736
|||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||
Sbjct 623 TTGGATTTGTCAAAGCCTTCCAAAGCTCTTACTATGACC-GTTACGGCGGTGGAGCCAAC 681
Query 737 TCTCTAGCCGATGGCTACAGCACAGGGACCGGTCTAGCCGCAGAGATCATTGGTACTTTC 796
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 682 TCTCTTGCCGATGGCTACAGCACAGGGACCGGTCTAGCGGCAGAGATCATTGGTACTTTC 741
Query 797 GTTCTTGTCTACACCGTCTTCTCTGCCACTGACCCCAAACGTAGTGCCAGAGACTCCCAC 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 GTTCTTGTCTACACCGTCTTCTCTGCCACTGACCCCAAACGTAGTGCCAGAGACTCCCAC 801
Query 857 GTTCCGGTGTTGGCGCCACTTCCAATCGGATTTGCCGTGTTCATGGTACATTTGGCTACC 916
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 802 GTTCCGGTGTTGGCGCCACTTCCAATCGGATTCGCGGTGTTCATGGTACATTTGGCCACC 861
Query 917 ATTCCCATTACCGGAACCGGAATTAACCCGGCAAGGAGTTTCGGAGCTGCCGTAATCTAC 976
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 862 ATTCCCATCACCGGAACCGGAATTAACCCGGCAAGGAGTTTCGGAGCTGCCGTAATCTTC 921
Query 977 AACAAGAGCAAGCCATGGGATGACCACTGGATATTTTGGGTTGGACCATTCATTGGAGCT 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 AACAAGAGCAAGCCATGGGATGACCACTGGATATTTTGGGTTGGACCATTCATTGGAGCT 981
Query 1037 GCGATAGCTGCATTCTACCACCAATTCGTTCTGAGAGCTTCAGGTTCTAAGTCTCTTGGA 1096
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 982 GCGATAGCTGCATTCTACCACCAATTCGTTCTGAGGGCTTCAGGTTCTAAGTCTCTCGGA 1041
Query 1097 TCATTCAGAAGTGCTGCCAACGTCTAAACACATCAAA-CCAGATTTCTCAAGAATAAATG 1155
|| |||||||||||||||||||||||||| || |||| ||||||||||||| ||||||||
Sbjct 1042 TCTTTCAGAAGTGCTGCCAACGTCTAAACCCACCAAAACCAGATTTCTCAATAATAAATG 1101
Query 1156 AAGTTGTGATCTCTCTGTACAAATCTAAATCAGTCACTTGCAGTTTTCATTTCCCTTTCT 1215
||||||| |||||| |||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 1102 AAGTTGTAATCTCT--GTACAAATCTAAATCAATCACTTGCAGTTTTCTTTTC--TTTCT 1157
Query 1216 TATAtttgtgttttccacttgctcttttgtgaattttcctt-cggtgtaattgttttttc 1274
||| || |||||||| |||||||||||||||||||||||| || ||||||||||||| |
Sbjct 1158 TAT-TT-GTGTTTTCTGCTTGCTCTTTTGTGAATTTTCCTTTCG-TGTAATTGTTTTTCC 1214
Query 1275 tttcgcttttAAA-CGAGTGATTGGAATTATAATCAATGAAATCAAAGAGGTTCTTAT 1331
||||| |||| || ||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1215 TTTCGTTTTTTAATCGAGTGATTGGAACTAAAATCAATGAAATCAAAGAGGTTCTTAT 1272
> Ahg482707 jgi|Araly1|482707|fgenesh2_kg.4__1767__AT2G37170.1
Length=998
Score = 839 bits (454), Expect = 0.0
Identities = 709/833 (85%), Gaps = 14/833 (2%)
Strand=Plus/Plus
Query 296 TTTCAGACAAGAGACTATC-AAGATCCGCCACCAGCTCCGTTTATT-GATG-GAGCGGAG 352
|||||||| || ||||| | | |||||||||||| | |||||| || || | | | ||||
Sbjct 66 TTTCAGACGAGGGACTA-CGAGGATCCGCCACCAACACCGTTT-TTCGACGCG-GAGGAG 122
Query 353 CTAAAGAAGTGGTCTTTCTACAGAGCAGTTATCGCAGAGTTCGTAGCCACTCTCCTCTTC 412
|| | |||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 123 CTTACGAAGTGGTCTTTATACAGAGCAGTCATCGCTGAGTTCGTAGCTACTCTCCTCTTC 182
Query 413 TTATACATCACCGTTTTGACAGTCATCGGTTACAAGATTCAGTCCGATACTGA-TGCCGG 471
|| ||| ||||||||||||| || |||||||||||||||||||| || | | |||||
Sbjct 183 TTGTACGTCACCGTTTTGACTGTTATCGGTTACAAGATTCAGTCTGACA-AAACCGCCGG 241
Query 472 TGGCGTAGATTGCGGCGGAGTTGGAATCCTCGGTATCGCTTGGGCCTTTGGTGGTATGAT 531
||| || || || ||||| |||||||||||||||||||| ||||| |||||||| |||||
Sbjct 242 TGGAGTTGACTGTGGCGGCGTTGGAATCCTCGGTATCGCGTGGGCTTTTGGTGGCATGAT 301
Query 532 CTTCATCCTCGTCTACTGCACCGCCGGTATCTCTGGTGGTCACATTAACCCAGCGGTGAC 591
|||||| || |||||||||||||| |||||||| ||||||||||| ||||| ||||||||
Sbjct 302 CTTCATTCTTGTCTACTGCACCGCTGGTATCTCAGGTGGTCACATAAACCCGGCGGTGAC 361
Query 592 ATTTGGGCTATTCTTGGCACGTAAAGTGTCG-TTACCTAGGGCCCT-ATTGTACATAATC 649
||||| | ||||||||||| || |||||| | | |||||| | || ||||| |
Sbjct 362 GTTTGGTTTGTTCTTGGCACGGAAGGTGTCGCTGA-TTAGGGCGGTGCTT-TACATGGTG 419
Query 650 GCTCAGTGTTTGGGTGCGATTTGTGGAGTTGGTTTTGTCAAAGCCTTCCAAAGCTCTTAC 709
||||||||||||||||| |||||||||||||| ||||| || || || ||||||||||||
Sbjct 420 GCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTTTGTGAAGGCTTTTCAAAGCTCTTAC 479
Query 710 TACACCCGTTACGGAGGTGGAGCCAACTCTCTAGCCGATGGCTACAGCACAGGGACCGGT 769
||| |||||||| || |||||||||||||||||||| || |||| ||| || || ||
Sbjct 480 TACGTTCGTTACGGTGGAGGAGCCAACTCTCTAGCCGACGGTTACAACACTGGCACGGGA 539
Query 770 CTAGCCGCAGAGATCATTGGTACTTTCGTTCTTGTCTACACCGTCTTCTCTGCCACTGAC 829
|| |||||||||||||| || || ||||| || |||||||| |||||||| ||||||||
Sbjct 540 CTTGCCGCAGAGATCATCGGAACATTCGTGCTCGTCTACACAGTCTTCTCCGCCACTGAT 599
Query 830 CCCAAACGTAGTGCCAGAGACTCCCACGTTCCGGTGTTGGCGCCACTTCCAATCGGATTT 889
|||||||| | || ||||||||||||||||||||||||||||||||||| || || |||
Sbjct 600 CCCAAACGCAACGCTAGAGACTCCCACGTTCCGGTGTTGGCGCCACTTCCGATTGGGTTT 659
Query 890 GCCGTGTTCATGGTACATTTGGCTACCATTCCCATTACCGGAACCGGAATTAACCCGGCA 949
|| ||||| |||||||||||||| || ||||| || ||||||||||| || ||||||||
Sbjct 660 GCTGTGTTTATGGTACATTTGGCAACAATTCCGATCACCGGAACCGGTATCAACCCGGCT 719
Query 950 AGGAG-TTTCGGAGCTGCCGTAATCTACAACAAGAGCAAGCCATGGGATGACCACTGGAT 1008
||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 720 AGGAGCTTT-GGAGCTGCCGTAATCTTTAACGAGAGCAAGCCATGGGATGACCACTGGAT 778
Query 1009 ATTTTGGGTTGGACCATTCATTGGAGCTGCGATAGCTGCATTCTACCACCAATTCGTTCT 1068
||| ||||| |||||||||||||||||||| ||||||||||| || |||||||| || ||
Sbjct 779 ATTCTGGGTGGGACCATTCATTGGAGCTGCAATAGCTGCATTTTATCACCAATTTGTCCT 838
Query 1069 GAGAGCTTCAGGTTCTAAGTCTCTTGGATCATTCAGAAGTGCTGCCAACGTCT 1121
|| ||||||||||| ||||| || ||||| ||||||||||| ||||||||||
Sbjct 839 CAGGGCTTCAGGTTCCAAGTCACTCGGATCCTTCAGAAGTGCAGCCAACGTCT 891
> Ahg934366 jgi|Araly1|934366|scaffold_402354.1
Length=826
Score = 568 bits (307), Expect = 5e-161
Identities = 474/556 (85%), Gaps = 6/556 (1%)
Strand=Plus/Plus
Query 567 GTGGTCACATTAACCCAGCGGTGACATTTGGG-CTATTCTTGGCACGTAAAGTGTCG-TT 624
|||||||||| ||||| ||||||||| ||||| | |||||||| || || |||||| |
Sbjct 250 GTGGTCACATAAACCCGGCGGTGACA-TTGGGATTGTTCTTGGCTCGGAAGGTGTCGCTG 308
Query 625 ACCTAGGGCCCT-ATTGTACATAATCGCTCAGTGTTTGGGTGCGATTTGTGGAGTTGGTT 683
| |||||| | || ||||| | ||||||||||||||||| |||||||||||||| |
Sbjct 309 A-TTAGGGCGGTGCTT-TACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGT 366
Query 684 TTGTCAAAGCCTTCCAAAGCTCTTACTACACCCGTTACGGAGGTGGAGCCAACTCTCTAG 743
|||| || || || ||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 367 TTGTGAAGGCTTTTCAAAGCTCTTACTACGTTCGTTACGGTGGAGGAGCCAACTCTCTAG 426
Query 744 CCGATGGCTACAGCACAGGGACCGGTCTAGCCGCAGAGATCATTGGTACTTTCGTTCTTG 803
|||| || |||| |||||| || || || |||||||||||||| || || ||||| || |
Sbjct 427 CCGACGGTTACAACACAGGCACGGGACTTGCCGCAGAGATCATCGGAACATTCGTGCTCG 486
Query 804 TCTACACCGTCTTCTCTGCCACTGACCCCAAACGTAGTGCCAGAGACTCCCACGTTCCGG 863
||||||| |||||||| |||||||| |||||||| | || |||||||||||||||||||
Sbjct 487 TCTACACAGTCTTCTCCGCCACTGATCCCAAACGCAACGCTAGAGACTCCCACGTTCCGG 546
Query 864 TGTTGGCGCCACTTCCAATCGGATTTGCCGTGTTCATGGTACATTTGGCTACCATTCCCA 923
|||||||||||||||| || || ||||| ||||| |||||||||||||| || ||||| |
Sbjct 547 TGTTGGCGCCACTTCCGATTGGGTTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGA 606
Query 924 TTACCGGAACCGGAATTAACCCGGCAAGGAGTTTCGGAGCTGCCGTAATCTACAACAAGA 983
| ||||||||||| || |||||||| |||||||||||||| |||||||||| |||||||
Sbjct 607 TCACCGGAACCGGTATCAACCCGGCCAGGAGTTTCGGAGCCGCCGTAATCTTTAACAAGA 666
Query 984 GCAAGCCATGGGATGACCACTGGATATTTTGGGTTGGACCATTCATTGGAGCTGCGATAG 1043
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 667 GCAAGCCATGGGATGACCACTGGATATTCTGGGTAGGACCATTCATTGGAGCTGCGATAG 726
Query 1044 CTGCATTCTACCACCAATTCGTTCTGAGAGCTTCAGGTTCTAAGTCTCTTGGATCATTCA 1103
||||||| || |||||||| || || || || |||||||| ||||| || || || ||||
Sbjct 727 CTGCATTTTATCACCAATTTGTCCTCAGGGCCTCAGGTTCCAAGTCACTCGGTTCCTTCA 786
Query 1104 GAAGTGCTGCCAACGT 1119
||||||| || |||||
Sbjct 787 GAAGTGCAGCAAACGT 802
> Ahg491143 jgi|Araly1|491143|fgenesh2_kg.7__576__AT4G35100.1
Length=1045
Score = 418 bits (226), Expect = 6e-116
Identities = 610/786 (78%), Gaps = 64/786 (8%)
Strand=Plus/Plus
Query 317 GATCCGCCACCAGCTCCGTTTATT-G--ATGGAGCGGAGCT-AAAGAAGTGGTCTTTCTA 372
||||| ||||||||||||||| || | |||| | ||||| ||| |||||||||||
Sbjct 129 GATCCTCCACCAGCTCCGTTT-TTCGACATGG-G-TGAGCTCAAA-TCCTGGTCTTTCTA 184
Query 373 CAGAGCAGTTATCGCAGAGTTCGTAGCCACTCTCCTCTTCTTATACATCACCGT-TTTGA 431
|||||| | ||||| |||||| | || || ||||||||| | ||| |||| || | |
Sbjct 185 CAGAGCTCTCATCGCTGAGTTCATCGCTACACTCCTCTTCCTCTACGTCACTGTCGCT-A 243
Query 432 CAGTCATCGGTTACAAGATTCAGTCCGATACTGATGCCGGTGGCGTAGATTGCGGCGGAG 491
| |||||||| |||||| || | | | | ||||| || ||| | ||| |
Sbjct 244 CTGTCATCGGCCACAAGA---AG--C-A-A---A--CCGGT-GC-----TTGTGACGGCG 285
Query 492 TTGGAATCCTCGGTATCGCTTGGGCCTTT-GGTGGTATGATCTTCATCCTCGTCTACTGC 550
|||| | ||||| |||||||||| |||| ||||||||||||||| ||||||| ||||||
Sbjct 286 TTGGTTTACTCGGCATCGCTTGGG-CTTTCGGTGGTATGATCTTCGTCCTCGTTTACTGC 344
Query 551 ACCGCCGGTATCTCTGGTGGTCACATTAACCCAGCGGTGACATTTGGG-CTATTCTTGGC 609
||||||||||||||||||||||||||||||||||| ||||| ||| || |||||||| ||
Sbjct 345 ACCGCCGGTATCTCTGGTGGTCACATTAACCCAGCTGTGAC-TTTCGGTCTATTCTTAGC 403
Query 610 ACGTAAAGTGTCGTTACCT-AGGGCCCTATTGT-ACATAATCGCTCAGTGT-TTGGGTGC 666
||||| || || || | || || || | || |||| || ||||||||| |||| ||
Sbjct 404 CCGTAAGGTCTCTTTGG-TGAGAGCTCT-TGGTTACATGATAGCTCAGTGTCTTGGA-GC 460
Query 667 GATTTGTGGAGTTGGTTTTGTCAAAGCCTTCC--AAAGCTC-TTACTACACCCGTTACGG 723
|||||||| || ||||| || ||||| ||| ||| ||| |||| |||| | || ||
Sbjct 461 CATTTGTGGTGTGGGTTTCGTGAAAGCTTTCATGAAAACTCCTTACAACACTC-TT--GG 517
Query 724 AGGTGGAGCCAACTCTC-TAGCCGATGGCTACAGCACAGGGACCGGTCTAGCCGCAGAGA 782
|| ||||| ||| | | |||| || |||||||||| ||| || | ||| | || ||||
Sbjct 518 TGGAGGAGCTAACAC-CGTAGCTGACGGCTACAGCAAAGGAACTGCTCTCGGAGCTGAGA 576
Query 783 TCATTGGTACTTTCGTTCTTGTCTACACCGTCTTCTCTGCCACTGACCCCAA-ACGTAGT 841
| || || |||||||| ||||| |||||||| |||||||| |||||||| || | | ||
Sbjct 577 TTATCGGAACTTTCGTCCTTGTTTACACCGTTTTCTCTGCAACTGACCCTAAGA-GAAGC 635
Query 842 GC-CAGAGACTCCCACGTTCCGGTGTTGGCGCCACTTCCAATCGGATTTGCCGTGTTCAT 900
|| | | ||||| ||| | || || ||||| ||||||||||| |||||||| ||||||||
Sbjct 636 GCTC-GTGACTCTCACATCCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGTGTTCAT 694
Query 901 GGTACATTTGGCTACCATTCCCATTACCGGAACCGGAATTAACCCGGCAAGGAG-TTTCG 959
||| ||||||||||| || |||||||||||||| || || ||||| ||||| || ||| |
Sbjct 695 GGTGCATTTGGCTACTATCCCCATTACCGGAACTGGTATCAACCCAGCAAGAAGCTTT-G 753
Query 960 GAGCTGCCGTAATCTACAACAA-GAGCAAGCCATGGGATGACCACTGGATATTTTGGGTT 1018
| ||||| || ||||||||||| ||| ||| | ||||||||||| ||||| |||||||||
Sbjct 754 GTGCTGCTGTTATCTACAACAACGAG-AAGGCGTGGGATGACCAATGGATCTTTTGGGTT 812
Query 1019 GGACCATTCATTGG-AGCTGCGATAGCTGCATTC--T-ACCACCAATTCGT-TCTGAGAG 1073
|| || ||| |||| ||| | |||||||| | | |||| |||| | | | ||||||
Sbjct 813 GGTCCGTTC-TTGGGAGCA-C--TAGCTGCAGCCGCTTACCATCAATACATAT-TGAGAG 867
Query 1074 CTTCAG 1079
||||||
Sbjct 868 CTTCAG 873
> Ahg485893 jgi|Araly1|485893|fgenesh2_kg.5__1885__AT3G54820.1
Length=1150
Score = 403 bits (218), Expect = 2e-111
Identities = 579/747 (78%), Gaps = 49/747 (7%)
Strand=Plus/Plus
Query 358 GAAGTGGTCTTTCTACAGAGCAGTTATCGCAGAGTTCGTAGCCACTCTCCTCTTCTTATA 417
||||||||||||||||||||| | ||||| |||||| ||||||||||||||||| | ||
Sbjct 178 GAAGTGGTCTTTCTACAGAGCTCTCATCGCTGAGTTCATAGCCACTCTCCTCTTCCTCTA 237
Query 418 CATCACCGTTTTGACAGTCATCGGTTACAAGATTCAGTCCGATACTGATG-CCGGTGGCG 476
|||||||| |||| |||||||||||||||| ||| ||||| | | | || | |
Sbjct 238 TGTCACCGTTATGACTGTCATCGGTTACAAGAGCCAGACCGAT-C--AAGCCCTGAATCC 294
Query 477 TAGA-TTGCG-GC-GGAGTTGGAATCCTCGGTATCGCTTGGGCCTTTGGTGGTATGATCT 533
| || | | || || ||||| |||| |||||||| |||||||||||||| |||||||
Sbjct 295 T-GACCAGTGTGCAGGCGTTGGCGTCCTTGGTATCGCATGGGCCTTTGGTGGCATGATCT 353
Query 534 TCATCCTCGTCTACTGCACCGCCGGTATCTCTGGTGGTCACATTAACCCAGCGGTGACAT 593
||||||||||||||||||||||||| ||||||||||| || ||||| || || ||||| |
Sbjct 354 TCATCCTCGTCTACTGCACCGCCGGCATCTCTGGTGGCCATATTAATCCGGCCGTGACTT 413
Query 594 TTGGGCTATTCTTGGCACGTAAAGTGTCGTTACCT-AGGGCCCT-ATTGTACATAATCGC 651
||||||| || ||||| || ||||| |||| | || || | || |||||| | ||
Sbjct 414 TTGGGCTGTTATTGGCTCGGAAAGTAACGTTGT-TGAGAGCAGTGAT-GTACATGGTGGC 471
Query 652 TCAGTGTTTGGGTGCGATTTGTGGAGTTGGTTTTG-TCAAAG-CCTTCCAAAGCT-CTTA 708
|||||| | ||||| |||||||| || || |||| |||| | ||||||| || ||||
Sbjct 472 TCAGTGCCTCGGTGCCATTTGTGGTGT-GGCTTTGGTCAA-GTCCTTCCAGT-CTGCTTA 528
Query 709 CTACACCCGTTACGGAGGTGGAGCCAAC--TCTCTAGCCGATGGCTACAGCA-CAGGGAC 765
||| | ||| ||||| || || || ||| ||||| ||||||| || |||| | || ||
Sbjct 529 CTATAACCGCTACGGTGGCGGCGCAAACGGTCTCT--CCGATGGTTATAGCATC-GGCAC 585
Query 766 CGGTCTAGCCGCAGAGATCATTGGTACTTTCGTTCTT-GTCTACACCGTCTTCTCTGCCA 824
|||| | ||||| |||||||| ||||| ||||| ||| ||||||||||||||||||||||
Sbjct 586 CGGTGTTGCCGCCGAGATCATAGGTACATTCGT-CTTAGTCTACACCGTCTTCTCTGCCA 644
Query 825 CTGACCCCAA-ACGTAGTGC-CAGAGACTCCCACGTTCC-G---G---TGT-T-GGCGCC 873
|||||||||| | | ||||| | | ||||| ||||| || | | ||| | ||| ||
Sbjct 645 CTGACCCCAAGAGG-AGTGCGC-GTGACTCTCACGTCCCTGTAAGCCCTGTATTGGCTCC 702
Query 874 ACTT-CCAATCGGATTTGCCGTGTTCATGGTACATTTGGCTACCATTCCCATT-ACCGGA 931
|| ||||| |||||||| |||||||| || || || ||||| || |||| | || ||
Sbjct 703 T-TTACCAATTGGATTTGCAGTGTTCATCGTTCACTTAGCTACAAT-CCCAATCACGGGC 760
Query 932 ACCGGAATTAACCCGGCAAGGAGTTTCGGAGCTGCCGTAATCTACAACAAG-AGCAA-GC 989
|| || |||||||| ||||| ||| |||||||||| | |||||||||||| | ||| ||
Sbjct 761 ACTGGCATTAACCCTGCAAGAAGTCTCGGAGCTGCAATCATCTACAACAAGGA-CAAAGC 819
Query 990 CATGGGATGACCACTGGATATTTTGGGTTGGACCATTCATTGGAGCTGCGATAGCTGCAT 1049
|||||| | || |||||||| ||||| || || || || || || || || || |
Sbjct 820 T-TGGGATCATCATTGGATATTCTGGGTGGGTCCGTTTGCGGGTGCAGCCATTGCGGCTT 878
Query 1050 TCTACCACCAATTCGT-TCTGAGAGCT 1075
||||||| || || || | |||| |||
Sbjct 879 TCTACCATCAGTTTGTGT-TGAGGGCT 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51427815033
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5