BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53430.1
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938244 jgi|Araly1|938244|scaffold_502435.1 904 0.0
> Ahg938244 jgi|Araly1|938244|scaffold_502435.1
Length=549
Score = 904 bits (489), Expect = 0.0
Identities = 524/541 (97%), Gaps = 1/541 (0%)
Strand=Plus/Plus
Query 51 AGCGAAACTCCAAAACACAGAGCCATGCCGCCGAAGTTGGACCCGAGCCAGATCGTCGAT 110
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 4 AGCGAAACTCCAAATCACAGAACCATGCCGCCGAAGTTGGACCCGAGCCAGATCGTCGAT 63
Query 111 GTGTACGTCCGTGTAACCGGAGGAGAAGTGGGAGCCGCCAGTTCTCTAGCTCCAAAGATC 170
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 64 GTGTACGTCCGTGTAACCGGAGGAGAAGTCGGAGCCGCCAGTTCTCTAGCTCCAAAGATC 123
Query 171 GGTCCTCTCGGTCTCGCACCAAAGAAGATCGGAGAAGACATCGCGAAAGAGACGGCCAAA 230
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 GGTCCACTCGGTCTCGCACCAAAGAAGATCGGAGAAGACATCGCGAAAGAGACGGCCAAA 183
Query 231 GAATGGAAAGGACTTCGTGTCACCGTGAAGCTGACGGTTCAGAATCGTCAAGCTAAGGTA 290
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GAATGGAAAGGACTTCGTGTCACCGTGAAGCTGACGGTTCAGAATCGTCAAGCTAAGGTC 243
Query 291 ACCGTGGTTCCATCTGCTGCAGCTCTCGTCATCAAGGCGTTGAAGGAGCCAGAGAGAGAC 350
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 244 ACCGTGGTGCCATCTGCTGCAGCTCTTGTCATCAAGGCGTTGAAGGAGCCAGAGAGAGAC 303
Query 351 CGTAAGAAGGTGAAGAACATTAAGCATAACGGTAACATCTCTTTCGATGATGTGACTGAG 410
|| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 304 CGCAAAAAGGTGAAGAACATTAAGCATAACGGTAACATCTCTTTCGATGATGTGATTGAG 363
Query 411 ATTGCTAGGATTATGAGGCCTAGATCTATTGCTAAGGAGCTGAGTGGGACTGTGAGGGAG 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 ATTGCTAGGATTATGAGGCCTAGATCTATTGCTAAGGAGCTGAGTGGGACTGTGAGGGAG 423
Query 471 ATTCTTGGAACGTGTGTCTCTGTGGGATGCACTGTTGATGGGAAAGACCCTAAGGATCTT 530
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 424 ATTCTTGGGACGTGTGTCTCTGTGGGATGCACTGTTGATGGGAAAGACCCGAAGGATCTT 483
Query 531 CAGCAGGAGATTCAAGAAGGTGAGATTGAGATTCCTGAGAATTAA-GGAACAATGGAGtt 589
|||||||||||||||||||||||||| || ||||||||||| ||| ||||||||||| ||
Sbjct 484 CAGCAGGAGATTCAAGAAGGTGAGATCGATATTCCTGAGAACTAAAGGAACAATGGAATT 543
Query 590 t 590
|
Sbjct 544 T 544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28897171086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5