BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53440.1
Length=1770
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485718 jgi|Araly1|485718|fgenesh2_kg.5__1710__AT3G53440.2 2237 0.0
> Ahg485718 jgi|Araly1|485718|fgenesh2_kg.5__1710__AT3G53440.2
Length=1593
Score = 2237 bits (1211), Expect = 0.0
Identities = 1456/1571 (93%), Gaps = 29/1571 (2%)
Strand=Plus/Plus
Query 26 GTTCGTTGAAATGACGAGAAGAAAATCCACCGTCGTCCTGCCGCAGCCTATTCGTCGATC 85
||||||||||||| ||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct 36 GTTCGTTGAAATGTCGAGAAGAAAATCCACCGTCGTCTTGCCGCAACCCATTCGTCGATC 95
Query 86 AGCGAGGCTTATCTCTCTGCAGAATCGAGATAGTCAAGTGAAACCCAGGAAAGATCTGGG 145
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 96 AGCGAGGCTTATCTCTATGCAGAATCGAGATAGTCAAGTAAAACCCAGGAAAGATCTGGT 155
Query 146 CTTTGGCTCGGAACCCA-CGAAGAAAACTCGTCGGGAAGTCTTAAGAGGTCTATCGAAGA 204
||||||||||||| ||| ||||||||||||||||||||||| || |||| ||||||||||
Sbjct 156 CTTTGGCTCGGAA-CCACCGAAGAAAACTCGTCGGGAAGTCCTACGAGGACTATCGAAGA 214
Query 205 GATTAGTATACTCATCGGATAGTCCAATCGAAGATTCGAGGTCGAAGAAATTGAACATTT 264
||||||||||||||| |||||||||||||| || || || | |||||||||||
Sbjct 215 GATTAGTATACTCATTGGATAGTCCAATCG-CGA--AGAAATCTCTGGGATTGAACATTT 271
Query 265 CGAAAGATGGGTTTCCGT-CGCTAAGGAGATCTCTTAGGCTTTCGAGTAGGGAATGTC-C 322
| || ||||||||||| | |||| ||| |||||||||||||||||||||||||||| |
Sbjct 272 CCAAGGATGGGTTTCC-TACGCTGAGGCGATCTCTTAGGCTTTCGAGTAGGGAATG-CTG 329
Query 323 TGAAGTCAACAAAGAGAAGCC---T------AAGACTGCATCTACTTCATCTTCTCGCAC 373
|| || || ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 330 TGGTGTTAATAAAGAGAAGCCTTTTACGAAGAAGACTGCATCTACTTCATCTTCTCGCAC 389
Query 374 GAAATCGTCGACCACTGTTTCGTCTTCTTGTGCTCTGAGACGTTCTCCTAGGTTTTCAAG 433
|||||| ||| ||||||||||| |||||| |||||||||| |||||||||||||||||
Sbjct 390 GAAATCTTCGGCCACTGTTTCG---TCTTGTTCTCTGAGACGGTCTCCTAGGTTTTCAAG 446
Query 434 TGGAGGAGGAGAATCTGTGGATCAATCTTCTTCTTCCATTGGGAAGAAATCAGGTAATAG 493
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 447 TGGAGGAGGAGGATCTGTGGATCAATCTTCTTCTTCCATTGGGTGGAAATCAGGTAATAG 506
Query 494 TGTTTTGAGTAGCTGTAGTACGAAATCAATTTCATCGGAGAAAGTGAAAGGTGGAGATGG 553
|||||||||||| |||||||||||||||||||| || ||||||| ||||||||| |||||
Sbjct 507 TGTTTTGAGTAGATGTAGTACGAAATCAATTTCTTCTGAGAAAGGGAAAGGTGGGGATGG 566
Query 554 TTTGAAATCTAAGGATAGAAGTAGAAGTCGTGTTCGTCCTAAGACTAAGAAGATGTTTAG 613
| ||||| |||||||||||||||||||||| ||||||||||| ||||| || |||||||
Sbjct 567 TGTGAAAAGTAAGGATAGAAGTAGAAGTCGTCTTCGTCCTAAGTCTAAGCAGTTGTTTAG 626
Query 614 TGGTTGTGATGATAATgaagaagaagaagaagaagTTAGTGTCTGCCTTACTGAGAGGAA 673
|||||||||||||||||||||||||| | ||||||||||||||| |||| |||||||||
Sbjct 627 TGGTTGTGATGATAATGAAGAAGAAG--G-AGAAGTTAGTGTCTGTCTTAGTGAGAGGAA 683
Query 674 AAGGATGAGAATTGCAAAGCCgaatgaggaagaaaatgctgaag-caaaagctgatgaag 732
|||||||||||||||||| ||||||||||||||||||| || | |||||||||||||||
Sbjct 684 AAGGATGAGAATTGCAAAACCGAATGAGGAAGAAAATGTTG-TGCCAAAAGCTGATGAAG 742
Query 733 tgaagagaaaaggaaaggaggaagaagaaga--a-gaagatgaagaagaaggattgaagg 789
||||||||||||||||||| ||||||||||| | ||||| |||||||| |||||||||
Sbjct 743 TGAAGAGAAAAGGAAAGGATGAAGAAGAAGATGATGAAGAAGAAGAAGATGGATTGAAGA 802
Query 790 caaagaataagcttgagaaagGAGGATGGACAGAGGAGTTGGAGTTAGCTTTACAAGGAG 849
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 CAAAGAAGAAGCTTGAGAAAGGAGGATGGACAGAGGAGTTGGAGTTAGCTTTACAAGGAG 862
Query 850 CTTATTTGACGGTGAAGCCAAGTCCTAATTTCTGGAAAAAAGTTGCTAAGATGGTTCCTG 909
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 863 CTTATTTGACGGTGAAGCCGAGTCCTAATTTCTGGAAAAAAGTTGCTAAGATGGTACCTG 922
Query 910 GAAAATCTGCGCAGGAATGTTTTGATAGAGTGAACTCAGCTCTGATTACTCCTCGTCAAG 969
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 923 GAAAATCTGCGCAGGAATGTTTTGATAGAGTGAACTCAGCTCTGATCACTCCTCGTCAAG 982
Query 970 CTCAGCCTCGAAGAGCCACAAAAACAATCTTATCAACGATTCCGCAGTTTTCACTTTCTG 1029
|||||||||||||||| | || |||| ||||||||| || ||||||||||| || ||||
Sbjct 983 CTCAGCCTCGAAGAGCAAGGAACACAAACTTATCAACAATCCCGCAGTTTTCGCTCTCTG 1042
Query 1030 CAAGCAAACTACTGAAACCCAATTCACCAAAGACAAAGATACGACAGCGCAGAAACAATC 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 CAAGCAAACTACTGAAACCCAATTCACCAAAGACAAAGATACGACAGCGCAGAAACAATC 1102
Query 1090 TCTCAAAGAAAGTGGTCAGGCATTTACTGGAGAAGCAAAATCATATGGATCAAGGTCTTG 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 TCTCAAAGAAAGTGGTCAGGCATTTACTGGAGAAGCAAAATCATATGGATCAAGGTCTTG 1162
Query 1150 GATTTGATCTCTTCTCAGTTCTTGAGCCTAACACCACAAGCAATTTTCTCTCAACTCCAA 1209
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1163 GATTTGATCTATTCTCCGTTCTTGAGCCTAACACCACAAGCAATTTTCTCTCTACTCCAA 1222
Query 1210 TGGAAAAAGGGCGAAGTCTTCCAAAAATCCTTGAAAGTCCGGTGCCTTGTTCAAGTAAAG 1269
|||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1223 TGGAGAAAGGGCAAAGTCTTCCAAAAATCCTTGAAAGTCCAGTGCCTTGTTCAAGTAAAG 1282
Query 1270 ATCCAACAACTCTCGTTAGCCCTCCAGTACTGAAACAGGTAAAAAACAAGGCATTGCATG 1329
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1283 ATCCAACAACTCTCGTTAGCCCTCCAGTACTAAAACAGGTAAAAAACAAGGCATTGCATG 1342
Query 1330 AGAAGTACATTGATCATCTGCATATCAGGGATGCTAAAAGAAAAGCCGAGTCAACTCGAC 1389
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1343 AGAAGTACATTGATCATCTGCATATCAGGGAAGCTAAAAGAAAAGCCGAGTCAACTCGAC 1402
Query 1390 TGGCTGGGAAAGAGAACATAAGACCTATTGAAATTCAGAAGAAGGATTCGGTGAGAGCAG 1449
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1403 TGGCTGGGAAAGAGAACATAAGACCTATTGAAATTCAGAAGAAGGATTCAGTGAGAGCAG 1462
Query 1450 CTAAGGATGCACTTTTCTTTGATGTACAAGATGCAATCCAAAAGCTAAAAGGTCTGGAAG 1509
| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1463 CAAAGGATGCCCTTTTCTTTGATGTACAAGATGCAATCCAAAAGCTAAAGGGTCTGGAAG 1522
Query 1510 CTGAGAACTCATCTAGTTCTTCAGAGTTTTGCTATGATCATGTCGAAACGGACGAAGAAG 1569
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1523 CTGAGAACTCATCTAGTTCTTCAGAGTTTTGCTATGATCATGGCGAAAATGACGAAGAAG 1582
Query 1570 ATTAAATCTAG 1580
|| ||||||||
Sbjct 1583 ATGAAATCTAG 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66429387280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5