BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53460.4
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348440 jgi|Araly1|348440|fgenesh1_pg.C_scaffold_5001832 808 0.0
> Ahg348440 jgi|Araly1|348440|fgenesh1_pg.C_scaffold_5001832
Length=1020
Score = 808 bits (437), Expect = 0.0
Identities = 508/541 (94%), Gaps = 9/541 (2%)
Strand=Plus/Plus
Query 648 TGAATTTGAAGGCAGACCTTTGAGAGTCAATGCTGGCCCTCCTCCACCTAAAAGAGAGGA 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 TGAATTTGAAGGCAGACCTTTGAGAGTCAATGCTGGCCCTCCTCCACCTAAAAGAGAGGA 548
Query 708 ATCCTTCTCCAGAGGACCAAGAAGTGGAGGTTACGGTTCTgagcgtggtggaggttacgg 767
||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||
Sbjct 549 ATCCTTCTCCAGAGGACCAAGAAGTGGTGGTTATGGTTCTGAACGTGGTGGAGGCTACGG 608
Query 768 ttccgagcgtggtggtggttatggttccgagcgtggtggtggttatggttccgagcgtgg 827
||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 609 TTCTGAGCGTGGTGGTGGTTACGGTTCTGAGCGTGGTGGTGGTTATGGTTCAGAGCGTGG 668
Query 828 tggtggatacggttctcaacgtagtggtggtggttACGGAGGGTCTCAACGTTCCAGTTA 887
|||||||||||| ||||| |||||||||||| | | |||||||||||||||||||||||
Sbjct 669 TGGTGGATACGGGTCTCAGCGTAGTGGTGGT--T-ATGGAGGGTCTCAACGTTCCAGTTA 725
Query 888 TGGTTCGGGGTCAGGGTCCGGTTCGGGCTCAGGTTCAGGAAACCGTCTCTACGTGGGCAA 947
||||||||||||||| | | ||||||||||||||||||||||||| |||||||||||
Sbjct 726 TGGTTCGGGGTCAGG-T----T-CGGGCTCAGGTTCAGGAAACCGTCTTTACGTGGGCAA 779
Query 948 CCTTTCTTGGGGTGTTGATGACATGGCACTTGAGAACTTGTTTAACGAGCAAGGAAAGGT 1007
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 780 CCTTTCTTGGGGTGTTGATGACATGGCCCTTGAGAACTTGTTTAATGAGCAAGGAAAGGT 839
Query 1008 AGTTGAAGCTAGGGTTATCTACGACAGGGACAGCGGTAGATCCAAGGGTTTTGGATTTGT 1067
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 840 AGTTGAAGCCAGGGTTATCTACGACAGGGACAGCGGTAGATCCAAGGGTTTTGGGTTTGT 899
Query 1068 GACACTTAGCTCTTCCCAAGAGGTTCAGAAGGCGATCAATTCCTTGAATGGAGCAGATTT 1127
|||||| || ||||| ||||||||||| ||||| ||||||||||||||||| || |||||
Sbjct 900 GACACTCAGTTCTTCTCAAGAGGTTCAAAAGGCCATCAATTCCTTGAATGGTGCTGATTT 959
Query 1128 GGATGGAAGACAAATAAGAGTCTCAGAGGCTGAGGCTAGGCCACCAAGAGGCCAATTTTG 1187
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 960 GGATGGAAGACAAATAAGAGTCTCGGAGGCTGAGGCTAGGCCACCAAGAGGCCAATTTTG 1019
Query 1188 A 1188
|
Sbjct 1020 A 1020
Score = 773 bits (418), Expect = 0.0
Identities = 466/490 (95%), Gaps = 0/490 (0%)
Strand=Plus/Plus
Query 97 ATGTCTGCCTCTGCTTCTTCCCTCTCTGCTTTCAATCCTAAATCCCTTCCTCTCTGCGTC 156
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGTCTGCCTCTGCTTCTTCTCTTTCTGCTTTCAACCCTAAATCCCTTCCTCTCTGCGTC 60
Query 157 TCCAGACCCGCTTCCGTCTCCGTCTTACCTCCTTCCCTCTCCTTCAAACTTCACTCCGAC 216
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TCCAGGCCAGCTTCCGTCTCCGTCTTACCTCCTTCCCTCTCCTTCAAACTTCATTCCGAC 120
Query 217 CACCTCGTCTCTATCTTCGCTTCCTCCGCCCTCAAATGCTCATCCCCCGCCGAGTACCCG 276
|| ||||||||| ||||||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 121 CATCTCGTCTCTCTCTTCGCTTCCTCCGCCGTGAAATGCTCATCCCCCGCCGAGTATCCG 180
Query 277 TCGCGTTTCGTTAGAAACGTTGCTGTATCTTCGGATTTTGAGGTGGAGGAAGATGATATG 336
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 181 TCGCGTTTTGTTAGAAACGTTGCTGTATCTTCAGATTTCGAGGTGGAGGAAGATGATATG 240
Query 337 TTCGCTGACGGTGACGATTCAGCGCCTGTGGAGCGTAACTCCTTCTCTCCTGACCTTAAG 396
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 241 TTCGCTGACGGTGACGATTCGGCGCCTGTGGAGCGTAACTCCTTCTCTCCTGACCTCAAG 300
Query 397 CTCTTTGTTGGTAACCTTTCTTTTAACGTTGATAGCGCTCAGCTTGCTCAGCTCTTTGAG 456
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTCTTTGTTGGTAACCTTTCCTTTAACGTTGATAGCGCTCAGCTTGCTCAGCTCTTTGAG 360
Query 457 AGCGCTGGAAATGTTGAGATGGTTGAGGTTATCTATGACAAAGTGACTGGCCGGAGCAGG 516
||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 361 AGCGCCGGAAATGTTGAGATGGTTGAGGTAATCTATGACAAAGTGACTGGACGAAGCAGG 420
Query 517 GGTTTCGGATTTGTGACAATGTCAACCGCAGCGGAAGTTGAAGCAGCAGCTCAACAGTTC 576
||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 421 GGTTTCGGATTTGTGACAATGTCTACCGCGGCAGAAGTTGAAGCAGCAGCTCAACAGTTC 480
Query 577 AATGGCTATG 586
||||||||||
Sbjct 481 AATGGCTATG 490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59915955385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5