BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53490.1
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485726 jgi|Araly1|485726|fgenesh2_kg.5__1718__AT3G53490.1 1218 0.0
> Ahg485726 jgi|Araly1|485726|fgenesh2_kg.5__1718__AT3G53490.1
Length=863
Score = 1218 bits (659), Expect = 0.0
Identities = 782/841 (93%), Gaps = 9/841 (1%)
Strand=Plus/Plus
Query 44 TACGCATTTCTCCAACTCCATAGCCAAAAGCTCGACGAGATCCAACAGCACCTCCTGATC 103
|||||||||||||||| |||||||||| ||||||| |||||||||||| ||||||| ||
Sbjct 27 TACGCATTTCTCCAACGCCATAGCCAATAGCTCGATGAGATCCAACAGTGCCTCCTGTTC 86
Query 104 TGCATCGTTTTCAACT-TAGCTTCTCCTGTCAATCGAAATCCCTAATTATACATTGATCG 162
|||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 87 TGCATCGTTTTCGACTAAAGCTTCTCCTGTCAATCGAAAACCCTAATTATACATTGATCG 146
Query 163 GATTCAATCGAGCGATTCGAGA-GAGAATCGCGATGTCAATCCAAATTCCGTCAGCTTCT 221
||||| ||||||||||| || | | |||||||||||||||||| |||||| |||||||||
Sbjct 147 GATTCGATCGAGCGATTGGATACG-GAATCGCGATGTCAATCCGAATTCCATCAGCTTCT 205
Query 222 TGGGATTTTCGCGGTTTCCTACTCTGTTTCATCTTCTTCAGCTCGTTACCAGGAACAATA 281
|||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 206 TGGGATGTTCGCGGTTTCCTACTCTTTTTCATCTTCTTCAGCTCGTTCCCAGGAACAATA 265
Query 282 CTAACACAAGAAGTTACA-TTAGATTCGGTTCAGATTTTCACGACTCACGATTGGTTCTC 340
|||||||||||||||||| || |||||| ||| ||||||||| |||||||| ||||||||
Sbjct 266 CTAACACAAGAAGTTACACTT-GATTCGATTCGGATTTTCACCACTCACGACTGGTTCTC 324
Query 341 GACTAAGCCTACAGTCTTTTTCCAATGCAAAGGAGAGAACAAGACGGTGTTGCCTGATGT 400
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 325 CACTAAGCCTACAGTCTATTTCCAATGCAAAGGAGAGAACAAGACGGTGTTACCTGATGT 384
Query 401 GAAGAGAACCAATGTTTCTTACT-CTTTCAATGGCGAAGAATCTTGGCAGCCACTAACCG 459
||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 385 GAAGAGAACCAATGTTTCTTA-TGCTTTCAATGGCGAAGAATCTTGGCAGCCATTAACCG 443
Query 460 AACTTCAAGGAACAAAATGCAAGAGATGTGGAATCTATGAGGACGACCCTCTTAAATATG 519
|||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 444 AACTGAAAGGAACAAAATGCAAGAGATGTGGAATCTATGAAGACGACCCCCTTAAATATG 503
Query 520 ATACATTTGACGAATGGGAGCTTTGCCCTTCTGATTTCACAGCAGAGGGTAGTTACAAGC 579
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 504 ATACATTTGACGAATGGGAGCTTTGTCCTTCTGATTTCACAGCAGAAGGTAGTTACAAGC 563
Query 580 GCTTCAAA-GAGAAAGAATTTAATGCTACTTTTCTCTGCCATGGATGCTCACAAGTTGGA 638
|| ||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 564 GC-GAAAAGGAGAAAGAATTTAATGCTACTTTTCTTTGCCATGGATGCTCACAAGTCGGA 622
Query 639 GCTGGTTCGAATAAAGAATCAGGCACCGAGAAGGAAGAACAAAAGGGCGGAATGCATCCT 698
|||||||| || ||| |||||||||| ||||| |||||| ||||| ||||||||||||||
Sbjct 623 GCTGGTTCAAACAAACAATCAGGCACTGAGAATGAAGAAGAAAAGAGCGGAATGCATCCT 682
Query 699 GGAATTGTGGTACTGATTGTAGTACTCTTGTTAGGTGTAGTTGCGGTGGGACTCTTGGTA 758
| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 683 GCAATTGTGGTACTGATTGTAGTACTCATGTTAGGTGTAGTTGCGGTGGGACTTTTGGTA 742
Query 759 GGTTACAAGTATTGGAGAAAGAAGAAACGGCAACAAGAGCAGGCCCGGTTTCTCAAGCTG 818
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 GGTTACAAGTATTGGAGGAAGAAGAAACGGCAACAAGAGCAGGCCCGGTTTCTCAAGCTG 802
Query 819 TTCGAAGATGGTGACGATATTGAGGACGAACTTGGCCTTGAAAATACCCTATGAAGCCAA 878
|| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 803 TTTGAAGATGGTGATGAAATTGAGGACGAACTTGGCCTTGAAAATACCCTATGAAGCTAA 862
Query 879 G 879
|
Sbjct 863 G 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34158133632
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5