BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53510.1
Length=2654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485729 jgi|Araly1|485729|fgenesh2_kg.5__1721__AT3G53510.1 4067 0.0
Ahg482729 jgi|Araly1|482729|fgenesh2_kg.4__1789__AT2G37360.1 1624 0.0
> Ahg485729 jgi|Araly1|485729|fgenesh2_kg.5__1721__AT3G53510.1
Length=2610
Score = 4067 bits (2202), Expect = 0.0
Identities = 2496/2636 (95%), Gaps = 28/2636 (1%)
Strand=Plus/Plus
Query 13 ttttttACAGAGTACCTTAAGCCCCAAGAAAAAATACATACAATAACGGAAAAATGTGGA 72
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 TTTTTTACAGAGTACCTTAAGCCCCAAGAAAAAATACATACAATAATGGAAAAATGTGGA 60
Query 73 TGGATTTGCCCAACTCCTCACCTACTCGTAACTTACAATTTATATACATACGAAAATATA 132
||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||
Sbjct 61 TGGATTTGCCCAACTCCTCACCTACTCTTAACTT-CAATGTATATACATACGAAAATATA 119
Query 133 AACAAAAGCTATGTACATGTAAATATGAAAAGCTACAAAACCCAGAACAACTCAAAGTTA 192
|||||||| ||||| ||||| || | ||||||||||||||||| |||||||||||||||
Sbjct 120 AACAAAAGATATGT--ATGTATATGTCAAAAGCTACAAAACCCAAAACAACTCAAAGTTA 177
Query 193 GATACTTAGAGATCACCAAACTAATTGACAAGTTTCTCCCTCATTCTCCCATCCAAATAT 252
||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 178 GATACTTAGAGATCACCAAACTAATTGACAAGTCTCTCTTTCATTCTTCCATCCAAATAT 237
Query 253 CCTATAAAGTCGATCAAAATTGTTCTGTGGGT-AAGACCTTTAGACACATTACCTGAGGC 311
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 238 CCTATAAAGTCGATCAAAATTGTTCTGTGGGTAAAGACCTTTAGACACATTACCTGAGGC 297
Query 312 CAAAACATTAACCAGACAATAATTCACGTGATGTCTGGTTTGTTCGGTATATTATCTCCG 371
|||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct 298 CAAAACATTAACCAGACAATAATTTACATGATGTCTGGTTTGTTCGGTAAATTATCTCCG 357
Query 372 GCCAAACGGGTCAATGGCGATGGCCTCCCTCTGTTTTACAATATCCACAAGTCAGTGGAG 431
||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 358 TCCAGACGGGTCAATGGCGATGACCTCCCTCTGTTTTACAATATCCATAAGTCAGTGGAG 417
Query 432 CTTCAGAGATGTCACAGAGACACTGCGCGGGTGTCTGTCACACTTGCAGAACTTCTCATG 491
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 418 CTTCAGAGATGTCAGAGAGACACGGCGCGGGTGTCTGTCACACTTGCAGAACTTCTCATG 477
Query 492 AGTGTGGAAGATGAGGGGGATGACCAGAGTCGGGCTATGGATATTGCGGTTGCGTCCAAT 551
|||||||||||||||||||||||||| ||||||||| ||||| |||| ||||| ||||||
Sbjct 478 AGTGTGGAAGATGAGGGGGATGACCACAGTCGGGCTTTGGATGTTGCAGTTGCCTCCAAT 537
Query 552 TTCTGGTCCTCGGTTCCGTCTTCTCGTGTGCCTTCTTCTTCTCCGTTTGTTCTTTCCTTC 611
|||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 538 TTCTGGGCCTCGGTTCCGTCTTCTTGCGTGCCTTCTTCTTCTCCGTTTGTTCTTTCCTTC 597
Query 612 AAAGACTTGACTTACAGCGTGAAGATCAAGAAGAAGTTTAAGCCCTTTCCTTGTTGTGG- 670
|||||||||||||| || ||||||||| ||||||||||||||||||| || ||||| ||
Sbjct 598 AAAGACTTGACTTATAGTGTGAAGATCCAGAAGAAGTTTAAGCCCTTCCCCTGTTGCGGT 657
Query 671 GAATTCACCTTTTGATGGTAATGATATGGAGATGAATACTAAGGTGCTCCTGAATGGTAT 730
| |||| || || | ||||| |||||||||||||||||||||||| |||||||||||
Sbjct 658 G-ATTCGCC--TT--T--TAATGGTATGGAGATGAATACTAAGGTGCTGCTGAATGGTAT 710
Query 731 TTCTGGTGAAGCCCGGGAAGGAGAGATGATGGCTGTTCTTGGAGCGAGCGGGTCAGGGAA 790
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 711 TTCTGGTGAAGCTCGGGAAGGAGAGATGATGGCCGTTCTTGGAGCGAGCGGGTCAGGGAA 770
Query 791 ATCAACGCTTATCGATGCATTAGCCAATCGGATTTCAAAAGAGAGCCTACGCGGTGATAT 850
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 771 ATCAACCCTTATCGATGCATTAGCCAATCGGATTTCAAAAGAGAGCCTACGTGGTGATAT 830
Query 851 TACTTTAAATGGGGAAGTTCTTGAATCTAGCCTGCATAAAGTCATATCAGCTTATGTGAT 910
||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 831 TACTTTAAACGGGGAAGTTCTTGAATCCAGCCTGCATAAAGTCATATCGGCTTATGTGAT 890
Query 911 GCAAGATGATCTTCTCTTCCCGATGCTCACCGTGGAAGAGACGTTGATGTTTTCTGCTGA 970
||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 891 GCAAGATGATCTTCTGTTCCCGATGCTCACCGTGGAAGAAACTTTGATGTTTTCTGCTGA 950
Query 971 GTTCAGGCTTCCAAGCTCGCTTTCTAAGAAGAAAAAGAAGGCACGGGTTCAAGCTCTGAT 1030
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 951 GTTCAGGCTTCCAAGCTCGCTTTCTAAGAAGAAAAAGAAAGCACGGGTTCAAGCTCTGAT 1010
Query 1031 TGATCAGCTCGGCCTGAGGAACGCAGCAAAAACCGTGATCGGTGATGAGGGACACAGAGG 1090
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1011 TGATCAGCTCGGCCTGAGAAACGCAGCAAAAACCGTGATCGGTGATGAGGGGCACAGAGG 1070
Query 1091 TGTGTCTGGAGGAGAAAGGAGAAGGGTCTCAATTGGAACCGATATAATCCATGACCCGAT 1150
|||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||
Sbjct 1071 TGTGTCTGGAGGAGAAAGGAGACGGGTGTCAATTGGAACCGATATAATCCATGATCCGAT 1130
Query 1151 TATTCTCTTTCTCGATGAGCCAACTTCTGGTCTTGACTCTACCAGTGCATACATGGTTGT 1210
||| |||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1131 TATCCTCTTTCTTGATGAGCCAACCTCAGGTCTCGACTCTACCAGTGCATACATGGTTGT 1190
Query 1211 CAAAGTGCTTCAGAGAATCGCACAAAGCGGCAGCATAGTTATCATGTCCATCCATCAGCC 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CAAAGTGCTTCAGAGAATCGCACAAAGCGGCAGCATAGTTATCATGTCCATCCATCAGCC 1250
Query 1271 GAGTTACAGAATCTTGGGATTACTCGATAAGTTAATCTTCCTATCTAGGGGAAACACCGT 1330
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GAGTTACAGAATCTTGGGCTTACTCGATAAGTTAATCTTCCTATCTAGGGGAAACACCGT 1310
Query 1331 TTACAGCGGCTCCCCGACACACCTCCCTCAGTTCTTCTCAGAATTCGGTCACCCAATTCC 1390
||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||
Sbjct 1311 TTACAGCGGCTCCCCAACACATCTCCCTCGGTTCTTCTCGGAATTCGGTCACCCAATTCC 1370
Query 1391 TGAAAACGAGAACAAGCCGGAGTTTGCACTCGATCTTATCCGTGAGCTGGAAGATTCGCC 1450
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 1371 TGAAAACGAGAACAAGCCAGAGTTCGCACTCGATCTTATCCGTGAGCTAGAAGATTCTCC 1430
Query 1451 AGAAGGAACGAAATCCTTAGTCGAGTTCCACAAGCAATGGCGAGCAAAGCAAACCTCAAG 1510
||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 AGAAGGAACCAAAGCCCTAGTCGAGTTCCACAAGCAATGGCGAGCAAAGCAAACCTCAAG 1490
Query 1511 CCAGAGCAGAAGAAACACCAATGTATCTCTCAAAGATGCAATCAGCGCAAGTATCTCGAG 1570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1491 CCAGAGCAGAAGAAACACCAATGTATCTCTCAAAGATGCAATCAGCGCAAGTATCTCCAG 1550
Query 1571 AGGTAAGCTTGTCTCCGGAGCAACAAACCTAAGATCATCATTTCAAACCTTTGCAAACCC 1630
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 AGGCAAACTTGTCTCCGGAGCAACAAACCTAAGATCATCATTTCAAACCTTTGCAAACCC 1610
Query 1631 ATTCTGGACTGAAATGCTCGTAATTGGTAAACGATCTATACTAAACTCAAGAAGACAACC 1690
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1611 ATTCTGGACTGAAATGCTCGTGATTGGCAAACGATCTATACTAAACTCAAGAAGACAACC 1670
Query 1691 AGAGCTATTCGGAATCCGCCTAGGAGCTGTACTAGTCACCGGAATGATCCTAGCCACAAT 1750
||||||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 1671 AGAGCTATTCGGAATGCGCCTCGGAGCTGTTCTAGTCACCGGAATCATCCTAGCCACAAT 1730
Query 1751 ATTCTGGAAACTAGACAATTCACCAAGAGGTATACAAGAACGCTTAGGGTTCTTCGCATT 1810
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1731 ATTCTGGAAACTAGACAATTCACCAAGAGGTATACAAGAACGTTTAGGGTTCTTCGCATT 1790
Query 1811 CGCAATGTCCACAACATTCTACACATGTGCAGAAGCAATACCAGTCTTTCTACAGGAACG 1870
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1791 CGCAATGTCCACAACATTCTACACCTGTGCAGAAGCAATACCAGTCTTTCTACAAGAACG 1850
Query 1871 TTACATATTCATGAGAGAAACAGCTTACAACGCTTACCGGCGATCATCATACGTCCTCGC 1930
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 CTACATATTCATGAGAGAAACAGCTTACAACGCTTACCGGCGATCATCATACGTCCTCGC 1910
Query 1931 TCACACAATAATCTCCATCCCTGCTCTCATAATCTTATCCGCCGCATTCGCCGCCTCAAC 1990
||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||||
Sbjct 1911 TCACACAATAATCTCAATCCCTGCTCTAATAATCTTATCCGCCGCCTTCGCCGCCACAAC 1970
Query 1991 ATTCTCGGCCGTAGGACTCGCCGGAGGCTCCGAGGGATTCCTCTTCTTCTTCTTCACAAT 2050
||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1971 ATTCTGGGCCGTAGGACTCGCCGGAGGCTCCGAAGGCTTCCTCTTCTTCTTCTTCACAAT 2030
Query 2051 CCTCACCGCGTTTTGGGCCGGAAGTTCCTTCGTGACGTTCTTATCCGGCGTAGTCTCACA 2110
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2031 CCTCACAGCGTTTTGGGCCGGAAGCTCCTTCGTGACATTCTTATCCGGCGTAGTCTCACA 2090
Query 2111 CGTGATGATCGGATTCACGGTGGTTGTAGCAATCCTCGCTTATTTCCTCCTCTTCTCCGG 2170
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2091 CGTGATGATCGGATTCACGGTGGTTGTAGCAATCCTCGCATATTTCCTCCTCTTCTCCGG 2150
Query 2171 ATTCTTCATCTCTAGAGATCGAATCCCACTCTACTGGATCTGGTTCCATTACCTCTCCCT 2230
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2151 ATTCTTCATCTCCAGAGATCGAATCCCAGTCTACTGGATCTGGTTCCATTACCTCTCCCT 2210
Query 2231 AGTGAAATACCCTTACGAAGGTGTTCTACAGAACGAATTCGAAGATCCGACGAAATGCTT 2290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2211 AGTGAAATACCCTTACGAAGGTGTTCTACAGAACGAATTCGAAGATCCGACGAAATGCTT 2270
Query 2291 CGTCAGAGGGATCCAGATGTTCGACAATTCGCCGCTGGGACAAGTTCCAACCGCCGTGAA 2350
| || | |||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2271 CATCCGTGGGATCCAAATGTTCGACAATTCGCCGCTGGGACAAGTTCCGGCCGCCGTGAA 2330
Query 2351 AATCAGCCTCCTGAAGAGCATGAGCGGCGTTTTGGGGATCAACGTGACGGCGGAGACTTG 2410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2331 AATCAGCCTCCTGAAGAGCATGAGCGGCGTTTTGGGGATCAACGTGACGGCGGAGACTTG 2390
Query 2411 CGTAACGACGGGAATCGATATACTGAAACAGCAAGGAATCACGGAGATAAGCAAATGGAA 2470
|||||||||||||||||| || ||||| || ||||||||||| ||||| |||||||||||
Sbjct 2391 CGTAACGACGGGAATCGACATTCTGAAGCAACAAGGAATCACTGAGATTAGCAAATGGAA 2450
Query 2471 TTGCTTGTGGATCACTGTAGCTTGGGGATTCTTCTTTAGGGTTCTCTTCTACTTCACACT 2530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2451 TTGCTTGTGGATCACTGTAGCTTGGGGATTCTTCTTTAGGGTTCTCTTCTACTTCACACT 2510
Query 2531 CTTGATCGGAAGCAAGAACAAGCGTCGCTGATTTACAAAACAGAAAATTATTAGAGTAAC 2590
||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 2511 CTTGATCGGAAGCAAGAACAAGCGTCGCTGATTTA------------TTA---GAGTAAC 2555
Query 2591 TTGACCAATGATTATGATGTACTTAATACTTATGATTAATACGAAATTGCATATGT 2646
| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2556 TA-ACCAATGATTATGATGTACTTAATACTTATGATTAATACAAAATTACATATGT 2610
> Ahg482729 jgi|Araly1|482729|fgenesh2_kg.4__1789__AT2G37360.1
Length=2366
Score = 1624 bits (879), Expect = 0.0
Identities = 1471/1750 (84%), Gaps = 67/1750 (4%)
Strand=Plus/Plus
Query 849 ATTACTTTAAATGGGGAAGTTCTTGAATCTAGCCTGCATAAAGTCATATCAGCTTATGTG 908
||||| ||||| || |||||||||||||| || ||||| ||||||||||| ||||| |||
Sbjct 575 ATTACCTTAAACGGAGAAGTTCTTGAATCCAGACTGCAGAAAGTCATATCGGCTTACGTG 634
Query 909 ATGCAAGATGATCTTCTCTTCCCGATGCTCACCGTGGAAGAGACGT-TGATGTTTTCTGC 967
|||||||| || ||||||||||||||||| |||||||| || || | | ||||| |||||
Sbjct 635 ATGCAAGACGACCTTCTCTTCCCGATGCTTACCGTGGAGGAAAC-TCTAATGTTCTCTGC 693
Query 968 TGAGTTCAGGCTTCCAAGCTCGCTTTCTAAGAAGAAAAAGAAGGCACGGGTTCAAGCTCT 1027
||||||||||| || | || || || |||||||| ||||| |||||||||||||||||
Sbjct 694 AGAGTTCAGGCTCCCTCGTTCACTCTCCAAGAAGAAGAAGAAAGCACGGGTTCAAGCTCT 753
Query 1028 GATTGATCAGCTCGGCCTGAGGAACGCAGCAAAAACCGTGATCGGTGATGAGGGACACAG 1087
|||||| || | ||||| |||| ||| |||||||||||||| |||||||| || |||||
Sbjct 754 GATTGACCAATTGGGCCTAAGGAGCGCTGCAAAAACCGTGATTGGTGATGAAGGCCACAG 813
Query 1088 AGGTGTGTCTGGAGGAGAAAGGAGAAGGGTCTCAATTGGAACCGATATAATCCATGACCC 1147
||| ||||||||||||||||||||| |||| |||||||||| ||| ||||||||||||||
Sbjct 814 AGGCGTGTCTGGAGGAGAAAGGAGACGGGTTTCAATTGGAAACGACATAATCCATGACCC 873
Query 1148 GATTATTCTCTTTCTCGATGAGCCAACTTCTGGTCTTGACTCTACCAGTGCATACATGGT 1207
||||| |||||||||||||||||||| || || ||||||||||| || || ||||||||
Sbjct 874 AATTATCCTCTTTCTCGATGAGCCAACCTCAGGGCTTGACTCTACGAGCGCCTACATGGT 933
Query 1208 TGTCAAAGTGCTTCAGAGAATCGCACAAAGCGGCAGCATAGTTATCATGTCCATCCATCA 1267
| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 934 TATCAAAGTGCTTCAGAGAATCGCACAGAGTGGCAGCATAGTTATCATGTCCATCCATCA 993
Query 1268 GCCGAGTTACAGAATCTTGGGATTACTCGATAAGTTAATCTTCCTATCTAGGGGAAACAC 1327
||| |||||||||||| |||| || || ||| ||||||||||||| ||||||||||||||
Sbjct 994 GCCAAGTTACAGAATCATGGGTTTGCTAGATCAGTTAATCTTCCTTTCTAGGGGAAACAC 1053
Query 1328 CGTTTACAGCGGCTCCCCGACACACCTCCCTCAGTTCTTCTCAGAATTCG-GTCACCCAA 1386
||||| |||||||| || ||||| |||||||||||||||||||| |||| | ||||| |
Sbjct 1054 GGTTTATAGCGGCTCACCAACACATCTCCCTCAGTTCTTCTCAGAGTTCGAG-CACCCGA 1112
Query 1387 TTCCTGAAAACGAGAACAAGCCGGAGTTTGCACTCGATCTTATCCGTGAGCTGGAAGATT 1446
||||||||||||||||||| | ||||| || |||||||| ||||| ||||||||| |||
Sbjct 1113 TTCCTGAAAACGAGAACAAAACAGAGTTCGCTCTCGATCTCATCCGAGAGCTGGAAAATT 1172
Query 1447 C-GCCAGAAGGAACGAAATC-CTTAGTCGAGTTCCACAAGCAATGGCGAGCAAAGCAAAC 1504
| | |||||||||| || || ||| ||||||||||||||| ||||||||||||||||| |
Sbjct 1173 CTG-CAGAAGGAACCAAGTCACTT-GTCGAGTTCCACAAGAAATGGCGAGCAAAGCAAGC 1230
Query 1505 -C--T---CAAGCCAGAGC-A--G----AAG--AAACACCAATGTATCTCTCAAAGATGC 1549
| | ||||| | ||| | | ||| ||||| ||| | |||||||||||| ||
Sbjct 1231 GCAATCACCAAGCTATAGCAATGGTAACAAGAAAAACAACAACGCATCTCTCAAAGAAGC 1290
Query 1550 AATCAGCGCAAGTATCTCGAGAGGTAAGCTTGTCTCCGGAGCAACAAAC--CT-A--AGA 1604
|| | ||| |||||||| ||||| || || ||||| |||||||||||| || | | |
Sbjct 1291 GATAACCGCGAGTATCTCCAGAGGGAAACTCGTCTCTGGAGCAACAAACAACTCATCAAA 1350
Query 1605 --T-----CATCATTTCAAACCTTTGCAAACCCATTCTGGACT-GAAATGCTCGTAATTG 1656
| ||||||| ||||| || || || || ||||||| | |||||| |||| || |
Sbjct 1351 CCTAACACCATCATTCCAAACATTCGCCAATCCTTTCTGGA-TCGAAATGATCGTCATAG 1409
Query 1657 GTAAACGATCTATACTAAACTCAA-GAAGACAACCAGAGCTATTCGGAATCCGCCTAGGA 1715
| ||||| ||||||||||||||| | |||||||||||||| ||||||| || ||||||
Sbjct 1410 GCAAACGCGCTATACTAAACTCAATG-AGACAACCAGAGCTCCTCGGAATGCGACTAGGA 1468
Query 1716 GCTGTACTAGTCACCGGAATGATCCTAGCCACAATATTCTGGAAACTAGACAATTCACCA 1775
|||||| | || |||||||| |||||||||||||| ||| || ||||||||||| |||
Sbjct 1469 GCTGTAATGGTGACCGGAATCATCCTAGCCACAATGTTCACTAACCTAGACAATTCCCCA 1528
Query 1776 AGAGGTA-TACAAGAACGCT-TAGGGTTCTTCGCATTCGCAATGTCCACAACATTCTACA 1833
| ||| | ||||||||| | |||| ||||||||||||||||||||||||||||||||||
Sbjct 1529 AAAGG-AGCACAAGAACG-TCTAGGATTCTTCGCATTCGCAATGTCCACAACATTCTACA 1586
Query 1834 CATGTGCAGAAGCAATACCAGTCTTTCTACAGGAACGTTACATATTCATGAGAGAAACAG 1893
|||||||||||||||| ||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 1587 CATGTGCAGAAGCAATCCCAGTGTTTCTAGAAGAACGTTACATATTCATGAGAGAAACAG 1646
Query 1894 CTTACAACGCTTACCGGCGATCATCATACGTCCTCGCTCACA-CAATAATCTCCATCCCT 1952
|||||||||| |||||| |||| || ||||||||| |||| | | |||||||| ||||||
Sbjct 1647 CTTACAACGCCTACCGGAGATCCTCCTACGTCCTCTCTCA-ATCCATAATCTCAATCCCT 1705
Query 1953 GCTCTCATAATCTTA-TC-C-GCC-GCATTCGCCGCCTCAACATTCTCGGCCGTAGGACT 2008
|| || ||||||| || | || || ||||||||| ||||||||| |||||| || ||
Sbjct 1706 GC-CT--TAATCTTCCTCTCCGCAAGC-TTCGCCGCCACAACATTCTGGGCCGTTGGTCT 1761
Query 2009 CGCCGGAGGCTCCGAG-GGATTCCTCTTCTTCTTCTTCACAATCCTCACCGCGTTTTGGG 2067
| ||||||||||| || || ||||||||||||||| ||||||||||| || | || ||||
Sbjct 1762 CTCCGGAGGCTCC-AGTGGTTTCCTCTTCTTCTTCCTCACAATCCTCGCCTCATTCTGGG 1820
Query 2068 CCGGAAGTTCCTTCGTGACGTTCTTATCCGGCGTAGTCTCACA-CGTGATGATCGGATTC 2126
||||||| |||||||| || ||| | |||||||| ||| | || ||| ||| ||||||||
Sbjct 1821 CCGGAAGCTCCTTCGTAACATTCCTCTCCGGCGTCGTCGC-CAACGTAATGCTCGGATTC 1879
Query 2127 ACGGTGGTTGTAGCAATCCTCGCTTATTTCCTCCTCTTCTCCGGATTCTTCATCTCTAGA 2186
|| | |||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1880 ACAATCGTTGTAGCGATCCTCGCTTACTTCCTCCTCTTCTCCGGATTCTTCATCTCCAGA 1939
Query 2187 GATCGAATCCCACTCTACTGGATCTGGTTCCATTACCTCTCCCTAGTGAAATACCCTTAC 2246
||||||||||| | |||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 1940 GATCGAATCCCTGTTTACTGGCTCTGGTTCCATTACATCTCCTTAGTGAAATACCCTTAC 1999
Query 2247 GAAGGTGT-TCTACAGAACGAATTCGAAGATCCGACGAAATGCTTCGTCAGAGG-GATCC 2304
||||| || | | ||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct 2000 GAAGGAGTGT-TGCAGAACGAATTCGAAGATCCGACGAAATGTTTCGTCAGAGGAGTTC- 2057
Query 2305 AGATGTTCGACAATTCGCCGCTGGGACAAGTT-CC-AACCGCCGTGAAAATCAGCCTCCT 2362
|||| || || ||||||||| |||| | ||| || ||| | ||||||| | | || |
Sbjct 2058 AGATTTTTGATAATTCGCCGTTGGGGGA-GTTTCCGAAC-GACGTGAAATTGAATCTGTT 2115
Query 2363 GAAGAGCATGAGCGGCGTTTTGGGGATC-AACGTGACGGCGGAGACTTGCGTAACGACGG 2421
|||||| |||||||| |||||||||| | || ||||||||||||||||| || |||||||
Sbjct 2116 GAAGAGTATGAGCGGTGTTTTGGGGA-CGAATGTGACGGCGGAGACTTGTGTGACGACGG 2174
Query 2422 GAATCGATATACTGAAACAGCAAGGAATCACGGAGATAAGCAAATGGAATTGCTTGTGGA 2481
| || |||||| |||| |||||||| || ||||| | || ||||||||||| |||||||
Sbjct 2175 GGATTGATATATTGAAGCAGCAAGGGATTACGGATTTTAGTAAATGGAATTGTTTGTGGA 2234
Query 2482 TCACTGTAGCTTGGGGATTCTTCTTTAGGGTTCTCTTCTACTTCACACTCTTGATCGGAA 2541
| ||||| ||||||||||| |||||||||||| | || || ||||| | ||||| || |
Sbjct 2235 TTACTGTTGCTTGGGGATTTTTCTTTAGGGTTTTGTTTTATTTCACTTTGTTGATTGGGA 2294
Query 2542 GCAAGAACAA 2551
||||||||||
Sbjct 2295 GCAAGAACAA 2304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100101163860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5