BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53520.4
Length=1884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485730 jgi|Araly1|485730|fgenesh2_kg.5__1722__AT3G53520.1 2037 0.0
> Ahg485730 jgi|Araly1|485730|fgenesh2_kg.5__1722__AT3G53520.1
Length=1688
Score = 2037 bits (1103), Expect = 0.0
Identities = 1207/1255 (96%), Gaps = 16/1255 (1%)
Strand=Plus/Plus
Query 111 GAAGGATTGCATCAAGTAATCGCCGTGTAACTAACTAC--TT-TTGCATTCACCATCGCT 167
|||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1 GAAGGATTGCATCAAGTAATCGCCGTGTAACTAACTACTTTTGTTGCA-TCACCATCGCT 59
Query 168 CTTACGTTTGAATCTATCCAGATCCAAAGCTCTTCTTCTTCCCGGCAATTCTGAGATCTC 227
||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 60 CTTTCGTTTGAATCTATCCAGATCCAAAG--C-TCTTCTTCCCGGCAATTCTGAGATCTC 116
Query 228 ATTTTCACCGGCGACGAGCTTTAATCGGAGAACGATGAAGCAGCTTCACAAGCAAATGAG 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 ATTTTCACCGGCGACGAGCTTTAATCGGAGAACGATGAAGCAGCTTCACAAGCAAATGAG 176
Query 288 CTCGAAGCGTGATGAAGAAACCATTCCCATGAGCCAATCCAGTCCTTACTCTCCCAAAAC 347
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 177 CTCGAAGCGTGACGAAGAAACGATTCCCATGAGCCAATCCAGTCCTTACTCTCCCAAAAC 236
Query 348 TTTAAAGCATCCCAGATCTCTTCCCAGATCGCTTCACTATCTCTTTCGTGAACAACGACT 407
| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 237 TCTAAAGCATCCCAGATCTCTTCCTAGATCGCTTCACTATCTCTTCCGTGAACAACGACT 296
Query 408 CCTCTTTATCCTCGTCGGGATCTTGATCGGATCCACTTTCTTCATCCTCCAGCCTTCTCT 467
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 297 CCTCTTTATCCTCGTCGGGATCTTGATCGGATCCACTTTCTTCATCCTTCAGCCTTCTCT 356
Query 468 CTCTCGTTTAGGCGCCGCTGAGTCCACCTCGTTAATCACCAGATCTGTTTCCTACGCCGT 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CTCTCGTTTAGGCGCCGCTGAGTCCACCTCGTTAATCACCAGATCTGTTTCCTACGCCGT 416
Query 528 CACCGATTCCCCGCCTTCCAGGTCGACTTTTAATTCCGGAGGCGGCGGAGGTAGAACCGG 587
|| ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 417 CAGCGATTCCCCGCCTTCCATGAAGACTTTTAATTCCGG---CGGCGGAGGTAGAACCGG 473
Query 588 TCGTGTTCCCGTCGGTATCGGACGGAAGAGACTGAGGATTGTTGTCACCGGTGGAGCTGG 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TCGTGTTCCCGTCGGTATCGGACGGAAGAGACTGAGGATTGTTGTCACCGGTGGAGCTGG 533
Query 648 TTTCGTCGGTAGTCATCTTGTTGATAAGCTTATCGGTAGGGGAGATGAAGTGATCGTGAT 707
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TTTCGTCGGTAGCCATCTTGTTGATAAGCTTATCGGTAGGGGAGATGAAGTGATCGTGAT 593
Query 708 TGATAACTTCTTCACTGGTAGGAAGGAGAATTTGGTTCATCTATTCTCGAATCCTAGGTT 767
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 594 TGATAACTTCTTCACTGGTAGGAAGGAGAATTTGGTTCATCTGTTCTCGAATCCTAGGTT 653
Query 768 TGAGCTAATTCGACACGATGTTGTTGAGCCAATCCTCCTTGAGGTCGATCAGATTTACCA 827
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 654 TGAGCTTATTCGACACGATGTTGTTGAGCCAATCCTCCTTGAGGTCGATCACATTTACCA 713
Query 828 TTTAGCTTGTCCAGCTTCACCTGTTCATTACAAGTATAATCCATTT-----TA-CAAGAC 881
||||||||| ||||||||||||||||||||||||||||||||| | || ||||||
Sbjct 714 TTTAGCTTGCCCAGCTTCACCTGTTCATTACAAGTATAATCCAGTGAAGACTATCAAGAC 773
Query 882 AAATGTAATGGGCACTCTCAATATGTTGGGTCTTGCAAAGAGAGTTGGGGCAAGGTTTCT 941
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 774 TAATGTAATGGGCACTCTCAATATGTTGGGTCTTGCAAAGAGAGTTGGGGCTAGGTTTCT 833
Query 942 GCTCACCAGCACAAGTGAAGTCTATGGAGATCCCCTTGAGCATCCACAGAAAGAGACTTA 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GCTCACCAGCACAAGTGAAGTCTATGGAGATCCCCTTGAGCATCCACAGAAAGAGACTTA 893
Query 1002 CTGGGGAAACGTGAATCCAATCGGTGAGAGGAGTTGCTATGATGAAGGAAAGCGTACTGC 1061
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TTGGGGAAACGTGAACCCAATCGGTGAGAGGAGTTGCTATGATGAAGGAAAGCGTACTGC 953
Query 1062 AGAAACCCTGGCCATGGATTATCACCGAGGTGCAGGTGTGGAGGTTAGAATTGCTCGTAT 1121
||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||
Sbjct 954 AGAAACCCTGGCCATGGATTATCACAGAGGTGCAGGTGTGGAGGTCAGAATAGCTCGTAT 1013
Query 1122 TTTCAACACATATGGGCCCAGAATGTGCCTTGATGATGGGCGTGTTGTTAGTAACTTTGT 1181
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TTTCAACACATATGGACCCAGAATGTGCCTTGATGATGGGCGTGTTGTTAGTAACTTTGT 1073
Query 1182 TGCCCAGACCATTCGCAAACACCCAATGACTGTTTATGGTGATGGAAAACAGACTCGTAG 1241
|||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1074 TGCCCAGACCATCCGCAAACACCCAATGACTGTTTATGGTGATGGTAAACAAACTCGTAG 1133
Query 1242 CTTTCAATATGTTTCTGACTTGGTGGAGGGACTTGTAGCTTTAATGGAAAACGATCATGT 1301
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1134 CTTTCAATATGTATCTGACTTGGTGGAGGGACTTGTAGCGTTAATGGAAAACGATCACGT 1193
Query 1302 AGGACCCTTCAACCTTGGTAACCCTGGAGAATTCACAATGCTTGAACTTGCAGAG 1356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 AGGACCCTTCAACCTTGGTAACCCTGGAGAATTCACAATGCTTGAACTTGCAGAG 1248
Score = 632 bits (342), Expect = 2e-180
Identities = 413/446 (93%), Gaps = 9/446 (2%)
Strand=Plus/Plus
Query 1430 AGGTGGTTAAGGAGGTGATCGACCCAAGCGCGACCATAGAGTTCAAACCAAACACAGCAG 1489
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1247 AGGTTGTTAAGGAGGTGATCGATCCAAGCGCGACCATAGAGTTCAAACCAAACACAGCGG 1306
Query 1490 ACGATCCTCACAAGAGGAAACCAGACATAAGCAAAGCAAAGGAACAGTTGAACTGGGAAC 1549
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1307 ACGATCCTCACAAGAGGAAACCAGACATAAGCAAAGCAAAGGAACTGTTGAACTGGGAAC 1366
Query 1550 CAAAGATATCTCTGAGGGAGGGACTGCCTCGCATGGTTAGTGACTTCCGTAACCGAATCT 1609
||||||| || || | || || |||||||||||||||||||||||||||||||||||||
Sbjct 1367 CAAAGATCTCACTTCGAGAAGGTCTGCCTCGCATGGTTAGTGACTTCCGTAACCGAATCT 1426
Query 1610 TAAACGAAGACGAAGGTAAAGGTCTCTAAGTCAGTCACACAGAGATATAGAGTATAATCC 1669
|||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1427 TAAACGAAGACGAAGGGAAAGGTCTCTAAGTCAGTCACACAGAGATA--GAGTATTATCC 1484
Query 1670 TTCTTCTGCTTTGATTTGATATATGTATAGtctctttttcaagagctctgctaagtcttt 1729
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1485 TTCTTCTGCTTTGATTTGATATATGTATAGTCTCTTTTTCAAGAGATCTGCTAAGTCTTT 1544
Query 1730 ttgttctctctgttttttctttttGGTTCTATCTCCAAGACACAGATT-ACTACTTATAT 1788
||||||||| | |||||| ||||||||||| ||||||||||||||||| ||||||||| |
Sbjct 1545 TTGTTCTCTGTTTTTTTTTTTTTTGGTTCTTTCTCCAAGACACAGATTTACTACTTAT-T 1603
Query 1789 TAGCTAATGTTTTTGACTT----GGGATTTTGTCATTGGGCCATTCACCACTAGGCTCAA 1844
|||||||||||| |||| |||||||||||| ||||||||| |||| |||||||||
Sbjct 1604 -AGCTAATGTTTTCGACTCAAAAGGGATTTTGTCACTGGGCCATTTACCAGTAGGCTCAA 1662
Query 1845 TATTAGTGGAAAGGTATTGATATAAA 1870
| ||||||||||||||||||||||||
Sbjct 1663 TTTTAGTGGAAAGGTATTGATATAAA 1688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70771675210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5