BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53530.2
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485733 jgi|Araly1|485733|fgenesh2_kg.5__1725__AT3G53530.2 1441 0.0
Ahg901607 jgi|Araly1|901607|Al_scaffold_0004_2257 200 2e-50
Ahg938255 jgi|Araly1|938255|scaffold_502446.1 58.4 1e-07
> Ahg485733 jgi|Araly1|485733|fgenesh2_kg.5__1725__AT3G53530.2
Length=1000
Score = 1441 bits (780), Expect = 0.0
Identities = 902/960 (94%), Gaps = 12/960 (1%)
Strand=Plus/Plus
Query 59 ttttgtttgtatatattaataaGCTCTTG-TTTTGCCAAAAATACATGAAAGCCGGTATG 117
||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||| ||||
Sbjct 1 TTTTGTTTGTATATATTAATAAGCTTTTGTTTTTGCCATAAA-ACATGAAAGCCAATATG 59
Query 118 TTTTATTGTGCATCGCAAGCATCGACCGCTACGGCTAACGGCGAACGTACCGTCACCGCT 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 60 TTTTATTGTGCATCGCAAGCATCGACCGCTACGGCTAACGGCGAACGTACCGTCACGGCT 119
Query 178 CGAGCCATCGACCGTCATAACCCGATTATCAAAGATGGTCGTAGATCTTTCACGGCACCG 237
||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 120 CGAGCCATCGACCGTCATAACCCGATTATCAAAGATGGTAGAAGATCTTTCACTGCACCG 179
Query 238 TGTTCCTCCGGAGACGACTACGTTGCTCCCTACCGTCAGCTTTCGAAAATTACGAGAGTA 297
||||||||||| || ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 180 TGTTCCTCCGGGGATGACTACGTTGCTCCCTACCGTCAGCTTTCCAAAATTACGAGAATA 239
Query 298 CCCTCCTCCTCCGGCGATGGAAAGAGTGTTCAGGTAGATAAAGGACGGAGAAGCAATTCA 357
|||||||||||||| || || ||||||| |||||| ||||||||| |||| |||||||||
Sbjct 240 CCCTCCTCCTCCGGAGACGGGAAGAGTGCTCAGGTGGATAAAGGAAGGAGGAGCAATTCA 299
Query 358 GGGTCGTTGATGAAGCTGATTAGCTA-TGACGTCAGCTTAGCGAGGAAGAGTTTTGGCTG 416
|||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||
Sbjct 300 GGGTCGTTGATGAAGCTGATTAGC-ACTGACGTCAGCTTAGCTAGGAAGAGTTTTGGTTG 358
Query 417 TGTTGTTGCAACACCCAAAACTCCTCCTGGTTCAACTAGGTATCTTCTGGGATCCGACCC 476
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 359 TGTCGTTGCAACGCCCAAAACTCCTCCCGGTTCAACTAGGTATCTTCTGGGATCCGACCC 418
Query 477 TGTTTCTTTAGCCGGGTCTACGGGTCAGGATACGGTTGCAACGG-AGGAAAGTGAAGCTT 535
|||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 419 TGTTTCTTTAGCCGGGTCTACGGGTCAGGATACGGTTGCAACGGTA-GAGGGTGAAGCTT 477
Query 536 CTGCGCCAAAAAGAGGCTCTTCTGGTCCCGTAGAAGAGAAGAAGAAGTCTTCTGGTTCAG 595
||| |||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 478 CTGGGCCAAAAATAAGCTCTTCTGGTGCCGTAGAAGAGAAGAAGAAGTCTTCTGGTTCAG 537
Query 596 GTTCAGACCAGGTAGTTGTTCTTAGAGTGTCTCTCCACTGTCACTGCAGAGGCTGTCAAG 655
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 538 GTTCAGACCAGGTGGTTGTTCTTAGAGTGTCTCTTCACTGTCACTGCAGAGGCTGTCAAG 597
Query 656 GCAAAGTGAAGAAACATCTATCCAAAATGCAAGTAGGTGTGACATCCTTCAACATAGATT 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GCAAAGTGAAGAAACATCTATCCAAAATGCAAGTAGGTGTGACATCCTTCAACATAGATT 657
Query 716 TTGCATCAAAGAAGGTAACTGTGACTGGAGACATCACTCCTTTGGAAGTATTGGGTTGCC 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTGCATCAAAGAAGGTAACTGTGACTGGAGACATCACTCCTTTGGAAGTATTGGGTTGCC 717
Query 776 TCTCAAAGGTCAAAAATGCCCAATTCTGGACACCACCTCCACCATCAATCCCAAGGGCAA 835
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 718 TCTCAAAGGTCAAAAATGCCCAATTCTGGACGCCACCTCCATCATCAATCCCAAGGGCAA 777
Query 836 ATCCGGAAACCTAAAAGAACCACTCACTTTTGTGTATTTGTGTTGTCTTCCTAGCTCTTA 895
||||||||||||||||||| ||| ||||||||||||| ||| |||||||||| ||| |
Sbjct 778 ATCCGGAAACCTAAAAGAATCACACACTTTTGTGTATATGTATTGTCTTCCT--CTC--A 833
Query 896 TTTGCTTGAATCAGATCAATCGTAAAATGT-G-GACTTTCCTACTTTTATGATTAAACTG 953
|||| ||||||||||||||| ||||||||| | |||||||||||||||||||| |||||
Sbjct 834 TTTGTTTGAATCAGATCAATGGTAAAATGTTGAGACTTTCCTACTTTTATGATGAAACTA 893
Query 954 TCATTACAGGGACACATGCTTCTTTATGATAAAATTGTCATTACATACTGCATTATCCTG 1013
|||||||||||||||||||||||||||||| || || |||||||||| ||||||||||||
Sbjct 894 TCATTACAGGGACACATGCTTCTTTATGATGAAGTTCTCATTACATATTGCATTATCCTG 953
Score = 73.1 bits (39), Expect = 4e-12
Identities = 48/52 (92%), Gaps = 2/52 (4%)
Strand=Plus/Plus
Query 1036 CCTTAAACTATGTAACA-AAGAGATTATTTAACTTTCTAGAAGATTGCACCT 1086
||| ||||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 950 CCTGAAACTATGTTACAGAA-AGATTATTTAACTTTCTAGAAGATTGCACCT 1000
> Ahg901607 jgi|Araly1|901607|Al_scaffold_0004_2257
Length=780
Score = 200 bits (108), Expect = 2e-50
Identities = 207/251 (82%), Gaps = 21/251 (8%)
Strand=Plus/Plus
Query 604 CAGGTAGTTGTTCTTAGAGTGTCTCTCCACTGTCACTGCAGAGGCTGTCAAGGCAAAGTG 663
||||| |||||||||| ||||||||| | ||||||||||||||| ||||||||||
Sbjct 541 CAGGTCGTTGTTCTTAAAGTGTCTCT---C---CACTGCAGAGGCTGTGAAGGCAAAGTT 594
Query 664 AAGAAACATC-TATCCAAAATGCAAGTAGGTGTGACATCCTTCAACATAGATTTTGCAT- 721
| |||||| | | ||| ||||| | |||||||||||||||||||||||||||||| |
Sbjct 595 AGGAAACA-CTTGGCCAGAATGC-A--AGGTGTGACATCCTTCAACATAGATTTTGC-TG 649
Query 722 CAAAGAAGGTAACTGTGACTGGAGACATCACTCCTTTGGAAGTATTGGGTTGCCTCTCAA 781
||||||||||||||||||||||||| |||||||| |||||| |||||| | ||||||
Sbjct 650 CAAAGAAGGTAACTGTGACTGGAGATATCACTCCCTTGGAAATATTGGAAAGTATCTCAA 709
Query 782 AGGTCAAAAATGCCCAATTCTGGACACCACCTCCACCATCAATCCCAAGGGCAAATCC-G 840
|||| |||||||||||||| |||||| || |||| ||| |||||| | |||| | |
Sbjct 710 AGGTTAAAAATGCCCAATTTTGGACA--AC-TCCAACAT---TCCCAAAGCCAAA-CGTG 762
Query 841 GAAACCTAAAA 851
|||||| ||||
Sbjct 763 GAAACCCAAAA 773
> Ahg938255 jgi|Araly1|938255|scaffold_502446.1
Length=2827
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Minus
Query 1056 AGATTATTTAACTTTCTAGAAGATTGCACCT 1086
|||||||||||||||||||||||||||||||
Sbjct 2822 AGATTATTTAACTTTCTAGAAGATTGCACCT 2792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40448414937
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5