BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53540.1
Length=3231
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938255 jgi|Araly1|938255|scaffold_502446.1 4292 0.0
Ahg485733 jgi|Araly1|485733|fgenesh2_kg.5__1725__AT3G53530.2 139 1e-31
> Ahg938255 jgi|Araly1|938255|scaffold_502446.1
Length=2827
Score = 4292 bits (2324), Expect = 0.0
Identities = 2668/2831 (94%), Gaps = 36/2831 (1%)
Strand=Plus/Plus
Query 282 TGAACAGTGAGTGAAAGATGAACAGATTTCGACTCAGCGACCTCAGTTCTCGAGATCGAT 341
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 4 TGAACAGTGAGTGAAAGATGAACAGATTTCGACTCAGCGACCTGAGTTCTCGAGATCGAT 63
Query 342 TAGCTTC--AAC-ACTGCCCACTTCTCACCAAGGAAAGAAACAGAAGAGTCAGAAACTCA 398
|| |||| | | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 64 TACCTTCTTCTCAAGTGCCCACTTCTCATCAAGGAAAGAAACAGAAGAGTCAGAAACTCA 123
Query 399 AATCTCCAAGGTCTTCTTCTCCTGAATTTAACTCTTGTCATTGTGAAGCTTTGAGTGAAA 458
||||| |||||||||| | | ||||||| |||||||||| || |||||||||||||||||
Sbjct 124 AATCTTCAAGGTCTTC-T-T-CTGAATTCAACTCTTGTCTTTCTGAAGCTTTGAGTGAAA 180
Query 459 ACAAGCAAGATTTTCCTACTGGAGTACCGATGAAAAGTTTGTTAGCACAAGAAATGTCAA 518
||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 181 ACAAGCAAGATTTTCATACTGGGGTACCGATGAAAAGTTTGTTGGCACAAGAAATGTCAA 240
Query 519 AGCAGAAAGAATCTAAAAAGAGATCGCCAAGCATTATAGCGAGATTGATGGGTCTCGATG 578
|||| || ||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 241 AGCACAAGGAATCTAAAAAGAGATCACCAAGCATTATAGCCAGATTGATGGGTCTCGATG 300
Query 579 TTTTGCCTTCTCAGAGTTCTTCTCATAAGCAACAAAAGTCTATGGAGAATCAGCAAGGCA 638
|||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 301 TTTTGCCTTCTCAGAGCTCTCCCCATCGGCAACAAAAGTCTATGGAGAATCAGCAAGGCA 360
Query 639 GGAGTGGTGGAGGCA---C-T-T-CT--T-ATAAATCTCTTGGAAAGCGCTCAAAGGGTG 689
||||||||||||||| | | | | | ||||||||||||||| ||||||||||||||
Sbjct 361 GGAGTGGTGGAGGCAGTTCTTATGATGGTAATAAATCTCTTGGAAGGCGCTCAAAGGGTG 420
Query 690 AGCAGAAGTTTAAAGATGTTTTCGAAGTTTTGGATGCAAAGATGGCAGAGAGTAACAGAA 749
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 421 AGCAGAAGTTTAAAGATGTTTTCGAAGTTTTGGATGCAAAGATGGCAGAGAGCAATAGAA 480
Query 750 ACTTATATCATCAGGGGAGGGTGAATGCTAATCTAACACAGGCGGAGATGGCATTCATAC 809
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 481 ACTTATATCATCAGGGGAGGGTGAATGCTAATCTAACACAGGCCGAGATGACATTCATAC 540
Query 810 GGCAGAAGTTCATGGAGGCTAAGCGGCTATCAACGGATGATAAACTTCGTCATTCTAAAG 869
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 GGCAGAAGTTCATGGAGGCTAAGCGGCTATCAACAGATGATAAACTTCGTCATTCTAAAG 600
Query 870 AGTTTAATGATGCTCTTGAGGCTCTAGACTCTAACAAAGACCTCTTACTGAAGTTTCTTC 929
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGTTTAATGATGCCCTTGAGGCTCTAGACTCTAACAAAGACCTCTTACTGAAGTTTCTTC 660
Query 930 AGCACCCAGATTCATTATTTACAAAACATCTGCATGATCTTCAAAGCACACCTCACAAGC 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGCACCCAGATTCATTATTTACAAAACATCTGCATGATCTTCAAAGCACACCTCACAAGC 720
Query 990 CACAGTACAGTCAAGCACCATCCTTGAAGTCGCCAAACAGTCAGAGGCATGTGGATAGTC 1049
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 721 CACAGTACCGTCAAGCACCATCCTTGAAGTCGCCAAACAGCCAGAGGCATGTGGATAGTG 780
Query 1050 TGAAAACTCAGAAAGTTGATAGGGACTTGTTGAGGAAGAGTCATCGGTCGCCTCATCGGA 1109
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 781 TGAAAACTCAGAAAGTTGATAGGGACTTGTTGAGGAAGAGTCATCAGTCGCCTCATCGGC 840
Query 1110 ATGGTGGTGGTGGTAGTGGTTGTCCTAGCCGTTCTCATACTAGGCATGCTTCTTATGACA 1169
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 841 ATGGTGGTGGTGGTAGTGGTTGTCCTAGCCGTTCTCATACTAGGCATACTTCTTATGACA 900
Query 1170 CGATTGACTTACCAAATGAGGAGCTGAGAAAGAGGAGTGAGTTGCAGCCAACCAAGATTG 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CGATTGACTTACCAAATGAGGAGCTGAGAAAGAGGAGTGAGTTGCAGCCAACCAAGATTG 960
Query 1230 TTGTTCTGAAACCTAACCTCGGGGAGCCACGTTATGCTGCTAGAACTTTTGCATCGCCAA 1289
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 961 TTGTTCTGAAACCTAACCTCGGGGAGCCACGTTATGCTGGTAGAACTTTTGCATCGCCAA 1020
Query 1290 GCTCTTCTTCCGATGAGTTCAGAGCAGATCGTAGGCTTCCATGCACCACCACTCATGGCA 1349
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1021 GCTCTTCTTCCGATGAGTTCAGAGCAGATCGGAGGCTTCCATGCACCACCAATCATGGCA 1080
Query 1350 GGCAGAAAAGTAATGAAGATGTCCGCCTGTCAAGACAGAATTCAAGAGATTGTGGAGAAA 1409
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1081 GGCAGAAAAGTAATGAAGATGTCCGCCTTTCAAGACAGAATTCAAGAGATTCTGGAGAAA 1140
Query 1410 TGGCCAAAATAATGTCTAGGCAAAGGAAGGTGAGCTGTGGCAATGGTCGTGCCATGAGTT 1469
|||||||||||||| ||||||||||||||| ||||||||| |||||| ||||||||||||
Sbjct 1141 TGGCCAAAATAATGGCTAGGCAAAGGAAGGCGAGCTGTGGTAATGGTAGTGCCATGAGTT 1200
Query 1470 TTGAGACTTCAGGATTTAGAGGATATGCAGGGGATGAAAGCTCATCAGGGAGTGACTCCG 1529
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1201 TTGAGACTTTAGGATTTAGAGGATATGCAGGGGATGAAAGCTCATCAGGGAGTGACTCTG 1260
Query 1530 CAAGTGAATCAGAGCTAGTGCCAGTAACTTCAGGAACAAGAACCGCCTTCAACCGTAGGA 1589
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1261 CAAGTGAGTCAGAGCTAGTGCCAGTAACTTCAGGAACAAGAACCGCCTTTAAGCGTAGGA 1320
Query 1590 ACTACCATCGATCTTTGCCTTCCAAGTCAACAACATCATCTGTGAGTAGGGAAGCTAAGA 1649
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1321 ACTACCATCGATCTTTGCCTTCCAAGTCAACAACATCATCTGTGAGTAGGGAAGCCAAGA 1380
Query 1650 GGAGACTGTCAGAGAGATGGAAGCTGACACACAAGTTTGAGCACGAGATAGAAATTAGTA 1709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GGAGACTGTCAGAGAGATGGAAGCTGACACACAAGTTTGAGCACGAGATAGAAATTAGTA 1440
Query 1710 GAAGTGGGACATTAGCTGAAATGCTTGCCACTTCAGATAGGGAGGCAAGGCCAGCAAGTT 1769
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1441 GAAGTGGGACATTAGCTGAAATGCTTGCAACTTCAGATAGGGAGGCAAGGCCAGCAAGTT 1500
Query 1770 TTAACGGACTCAGTTTCGAAGATGGGATTAGTAAAAGATTTGAGAACAACATTCAGTGGC 1829
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1501 TTAATGGACTCAGTTTCGAAGATGGGATTAGTAAAAGATTTGAGAACAACATTCATTGGT 1560
Query 1830 CTGAACTGCCAGAACCAGTTGGAATCAGCAGTAGGGATGGTTGGAAAGGATCCTGCTCAA 1889
||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 CTGAATTGCCAGAGCCGGTTGGAATCAGCAGTAGGGATGGTTGGAAAGGATCCTGCTCAA 1620
Query 1890 GAAGTTTTTCAAAATCCAGAACCATCATGAACCAGGAGAGCGCT-G-G-TGGTTACACCA 1946
|||||||||||||| ||| |||||||||||||||||| ||| || | | |||||||||||
Sbjct 1621 GAAGTTTTTCAAAACCCAAAACCATCATGAACCAGGAAAGCACTTGTGGTGGTTACACCA 1680
Query 1947 TAGTGTTGCCTAAGGGGTTGATCAATCGAGATGCATTAGTGCAGGGGGATTCTTCTCATC 2006
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1681 TAGTGTTGCCTAAGGGGTTGATCAATCGAGATGGATTAGTGCAGGGGAATTCTTCTCATC 1740
Query 2007 ACGGAGAGTCTTTCTTGTCAAGCAAATCTAGACCTGGCAGTAACAAATCTCATTCATCAT 2066
| |||||| ||| ||| |||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1741 ATGGAGAGCCTTCCTTATCAAACAAATCTAGACCCGGCAGTAACAAATCTCATTCATCAT 1800
Query 2067 ACAATAGTTCGCCAGAGGTCAGCATCACCCCAAGTTTAAGCAAGTTTGTTTATATGAACG 2126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 ACAATAGTTCGCCAGAGGTCAGCATCACCCCAAGTTTAAGCAAGTTTGTTTATATGAACG 1860
Query 2127 ACGGGATTCCAAGCAAGTCA-GCA-TCTCCTTTTAAAGCACGTAGCAGTTTCTCAGGAGA 2184
| ||| |||||| ||| | || ||||||||| ||||||||| |||||||||||||||
Sbjct 1861 AAGGGGTTCCAA--AAGAAAAGCTCTCTCCTTTTCAAGCACGTAACAGTTTCTCAGGAGA 1918
Query 2185 TGCAAATTCAGACACTGAAGATAGTTCAGCTTCTGATGATATCAAGACAGCAATGTCTTC 2244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 TGCAAATTCAGACACTGAGGATAGTTCAGCTTCTGATGATATCAAGACAGCAATGTCTTC 1978
Query 2245 TGAGGCTCTAGATTTGTCAACTGTCACCTCGGTAACTGACCCTGATATCTCAAGGAGGAC 2304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 TGAGGCTCTAGATTTGTCAACTGTCACCTCGGTAACTGACCCTGATATCTCAAGGAGGAC 2038
Query 2305 AACTGAGGATGTGAATCATTCTTCGGTTCCTGATCCACCACAGCCTCGTGAAAGCTCAAA 2364
|||||| ||||||||||||||||||| |||||| |||| | | ||| |||||||| |||
Sbjct 2039 AACTGAAGATGTGAATCATTCTTCGGCTCCTGAGCCAC-A--GTCTCATGAAAGCTTAAA 2095
Query 2365 GGAAGGAGATCAACCAAGTCCGGTTTCAGTTCTAGAAGCTTCGTTCGACGATGATGTATC 2424
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2096 AGAAGGAGATCAACCAAGTCCGGTTTCAGTTCTAGAAGCTTCTTTCGACGATGATGTTTC 2155
Query 2425 ATCAGGTTCGGAATGCTTTGAGAGTGTTAGCGCGGATCTCCGAGGACTCAGAATGCAACT 2484
||||||||| |||||||||||||||||||| |||||||||| ||||||||| ||||||||
Sbjct 2156 ATCAGGTTCTGAATGCTTTGAGAGTGTTAGTGCGGATCTCCAAGGACTCAGGATGCAACT 2215
Query 2485 TCAGCTCCTCAAACTAGAGTCAGCTACTTACAAAGAAGGTGGCATGCTCGTTTCGAGTGA 2544
||| ||||||||||| |||||||||| |||||| |||||| | |||||| ||||||||||
Sbjct 2216 TCAACTCCTCAAACTCGAGTCAGCTAGTTACAATGAAGGTCGTATGCTCATTTCGAGTGA 2275
Query 2545 TGAAGA---CACTGATCAAGAGGAGTCATCCACAATAACTGATGAGGCTATGATTACCAA 2601
|||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 2276 TGAAGAAGACACAGATCAAGAGGAGTCATCCACAATAACTGATGAGGCGATGATTACCCA 2335
Query 2602 GGAGCTCAGAGAAGAAGACTGGAAGTCATCATACTTAGTTGATCTCCTAGCCAACTCCAG 2661
|||||| ||||||||||||||| ||||| ||||||||||||||| |||||||||||||
Sbjct 2336 TGAGCTCGGAGAAGAAGACTGGAGGTCATTATACTTAGTTGATCTTCTAGCCAACTCCAA 2395
Query 2662 TTTCAGTGACTCAGACCACAACATTGTCATGGCAACAACA-C-C-TGTAGAGCCATCCTT 2718
|||||||| ||||||||||| ||||||||||||||||||| | | |||||| ||||||||
Sbjct 2396 TTTCAGTGGCTCAGACCACAGCATTGTCATGGCAACAACAACACCTGTAGATCCATCCTT 2455
Query 2719 GTTTGAGGATCTCGAGAAGAAGTACTCCAGCGTGAAAACCTCAACCCGGTTAGAAAGAAA 2778
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||
Sbjct 2456 GTTTGAGGATCTCGAGAAGAAGTATTCCAGCGTGAAAACCTCAACCCGGCTAGAAAGGAA 2515
Query 2779 GCTTCTTTTTGACCAGATCAGCAGAGAAGTACTAC-ATATGTTAAAGCAGTTGTCGGATC 2837
||| || |||||||||||||| ||||||||||| | |||||||||||||||| |||||||
Sbjct 2516 GCTCCTATTTGACCAGATCAGTAGAGAAGTACT-CTATATGTTAAAGCAGTTTTCGGATC 2574
Query 2838 CACACCCTTGGGTTAAATCCACAAAGGTATGCCCGAAATGGGATGCAAACAAGATACAAG 2897
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 2575 CACACCCTTGGGTTAAATCCACAAGGGTATGCCCGAAATGGGATGCAAACAAGATTCAAG 2634
Query 2898 AGACTCTGCGAGATTTGGTCACAAGAAAAGACGAGAAACCAAGCAAATATGATGTGGAGG 2957
||||||| | ||| ||||||||||||||||| ||||||||||||||| || |||||||||
Sbjct 2635 AGACTCTTCAAGAATTGGTCACAAGAAAAGATGAGAAACCAAGCAAAGATAATGTGGAGG 2694
Query 2958 AGAAGGAGTTGCAGTGGCTGAGTTTAGAAGATGACATTGAAATCATAGGTAGAGAGATTG 3017
|| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2695 AG--G-AGTTGCAGTGGCTGAGCTTAGAAGATGACATTGAAATCATAGGTAGAGAGATTG 2751
Query 3018 AGGTAATGCTGACAGATGAACTCATAACAGAGCTTGTGGTAGGTGCAATCTTCTAGAAAG 3077
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2752 AGGAAATGCTGACAGATGAACTCATAACAGAGCTTGTGGTAGGTGCAATCTTCTAGAAAG 2811
Query 3078 TTAAATAATCT 3088
|||||||||||
Sbjct 2812 TTAAATAATCT 2822
> Ahg485733 jgi|Araly1|485733|fgenesh2_kg.5__1725__AT3G53530.2
Length=1000
Score = 139 bits (75), Expect = 1e-31
Identities = 94/103 (91%), Gaps = 2/103 (2%)
Strand=Plus/Minus
Query 3131 CAGGATAATGCAGTATGTAATGACAATTTTATCATAAAGAAGCATGTGTCCCTGTAATGA 3190
|||||||||||| |||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 953 CAGGATAATGCAATATGTAATGAGAACTTCATCATAAAGAAGCATGTGTCCCTGTAATGA 894
Query 3191 CAGTTTAATCATAAAAGTAGGAAAGTC-CA-CATTTTACGATT 3231
||||| |||||||||||||||||||| || |||||||| |||
Sbjct 893 TAGTTTCATCATAAAAGTAGGAAAGTCTCAACATTTTACCATT 851
Score = 73.1 bits (39), Expect = 1e-11
Identities = 48/52 (92%), Gaps = 2/52 (4%)
Strand=Plus/Minus
Query 3058 AGGTGCAATCTTCTAGAAAGTTAAATAATCTCTT-TGTTACATAGTTTAAGG 3108
||||||||||||||||||||||||||||||| || ||| ||||||||| |||
Sbjct 1000 AGGTGCAATCTTCTAGAAAGTTAAATAATCT-TTCTGTAACATAGTTTCAGG 950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121936463892
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5