BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53550.1
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485736 jgi|Araly1|485736|fgenesh2_kg.5__1728__AT3G53550.1 1079 0.0
Ahg894266 jgi|Araly1|894266|Al_scaffold_0006_2262 154 9e-37
> Ahg485736 jgi|Araly1|485736|fgenesh2_kg.5__1728__AT3G53550.1
Length=766
Score = 1079 bits (584), Expect = 0.0
Identities = 709/769 (92%), Gaps = 9/769 (1%)
Strand=Plus/Plus
Query 7 GTGCGAGAGCTATGTTTCATGCTCACGTGGGCTG-GAGAGCCGACCAGCTTACCTAAGAG 65
|||||||||||||||||||||||||| ||| | | | ||||| |||||||| || |||||
Sbjct 1 GTGCGAGAGCTATGTTTCATGCTCACCTGGTCCGCG-GAGCCAACCAGCTTGCCAAAGAG 59
Query 66 TCTTTACACATGTGAAACTCTAGTCTCTCTATGTCTTTCCGGCAAGATTCTCATTGATGT 125
|||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||
Sbjct 60 CCTTTACACATGTGAAACTCTTGTCTCTCTATGTCTTTCCGACAAAATTCTCATTGATGT 119
Query 126 TCCTTCTTTGGCTTGTCTTCCATCCCTCAAAGAAAACGAAGGTATTGTGGGGACTTTGGT 185
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCCTTCTTTGGCTTGCCTTCCATCCCTCAAAGAAAACGAAGGTATTGTGGGGACTTTGGT 179
Query 186 TATAGATTCACCGATTTTAAAGAAAATCTGCATTACAGATTATTCGGGAGACTCTTACTC 245
||||||||||||| ||||||||||||||| |||||||||||||| ||||||| || |||
Sbjct 180 TATAGATTCACCGGTTTTAAAGAAAATCTTTATTACAGATTATTCAGGAGACTTTTGCTC 239
Query 246 GTTTGGGAATAAGCCTCGCCTTGATAAGGCAAAGATCAACCTTTT-CTATTACCCTGATA 304
||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 240 GTTTGAGAATAAGCCTCGCCTTGATAAGGCAAAGATCAACCTTTTAC-ATTACCCTGATA 298
Query 305 ACAAGTTTATGAGATCTCTTTCCTCAATCATGTGTCTCGAACTAATTTTGAGCGTTGCAA 364
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 299 ACAAATTTATGAGATCTCTTTCCTCAATCATGTGTCTCGAATTAATTTTGAGCGTTGCAA 358
Query 365 CGCTTGCGTGGTTGAACGCTAATAACTTCTCTCGGCTTATAGAGTGTAAGCTGATTATTC 424
||||||||||| ||||||||| || |||||||||||||||||||||||| ||||||||||
Sbjct 359 CGCTTGCGTGGCTGAACGCTATTACCTTCTCTCGGCTTATAGAGTGTAAACTGATTATTC 418
Query 425 TAAACGAGTTAGA---CTGGTTGGAATCACTAATGTCGTTCAAACAACTTGAAAAGGAGT 481
||||||||||||| |||||||||| |||||||||| ||||||| ||| ||||||||||
Sbjct 419 TAAACGAGTTAGAGTACTGGTTGGAACCACTAATGTCATTCAAACGACTCGAAAAGGAGT 478
Query 482 TGCCACTTTCATGGAACCAACCGAGTTCTGTTCCCGAATGTTTGTCCAACCATCTCA-AG 540
||||| |||||||||||||||||||||||||||||||||| |||| |||||||| | ||
Sbjct 479 TGCCAATTTCATGGAACCAACCGAGTTCTGTTCCCGAATGCATGTCAAACCATCT-AGAG 537
Query 541 ATATTCGAGTGGAAAGGATATAGGGGAAGAAAGGAGGAGAAAGAAATCGTGCGATACATC 600
|| || ||||||||||||||||| ||||||| |||||||||||||||| |||||||||||
Sbjct 538 ATCTTTGAGTGGAAAGGATATAGAGGAAGAAGGGAGGAGAAAGAAATCATGCGATACATC 597
Query 601 CTTGCCAACTCTAAGTGTTTAAGGAGAATTGGAGTCTCCTTGAAATCAACCAACAACCAT 660
|||||||||||||||||||||| |||| ||||||||| ||||| |||||||||||| ||
Sbjct 598 CTTGCCAACTCTAAGTGTTTAAAGAGAGTTGGAGTCTTCTTGAGATCAACCAACAAGGAT 657
Query 661 AAGACGATCAAAGAGTTAGAATCTATGTCTAGGGTTTCGACATCATCCCATCTTCTATTC 720
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 658 AAGACGATGAAAGAGTTAGAATCTATGTCTAGGGTTTCGACATCATCCCATCTTATATTC 717
Query 721 TCCACTCAATTTGAATATATGAGCGTTGACAATGAAATAAGGAGTGACT 769
||||||||| | |||||||||||||| |||||||| ||| ||||||||
Sbjct 718 TCCACTCAAGTGGAATATATGAGCGTCAACAATGAAGTAATGAGTGACT 766
> Ahg894266 jgi|Araly1|894266|Al_scaffold_0006_2262
Length=813
Score = 154 bits (83), Expect = 9e-37
Identities = 237/308 (77%), Gaps = 24/308 (8%)
Strand=Plus/Plus
Query 470 TTGAAAAGGAGTTGC-CACTTTCATGGAACCAACCGAGTTCTGTTCCCGAATGTTTGTC- 527
||||| |||| || | |||||||||||||| |||| |||| |||||||| ||| || ||
Sbjct 506 TTGAAGAGGA-TTTCTCACTTTCATGGAACGAACCAAGTTTTGTTCCCGGATG-TT-TCG 562
Query 528 CA-ACCATCTCAAGATATTCGAGTGGAAAGGATATAGGGGAAGAAAGGAGGAGAAAGAAA 586
|| |||||||||||| || || ||||||||||||| ||| || | | |||||||||
Sbjct 563 CAGCCCATCTCAAGATCTTTGAATGGAAAGGATATATAGGACGACACAAAGAGAAAGAAG 622
Query 587 TCGTGCGATACATCCTTGCCAACTCTAAGTGTTTAAG-GAGAATTGGAGTCTCCT-TGAA 644
| | ||| ||| |||||||||| || ||||| || |||| || ||| | || || |
Sbjct 623 CCATAAAATATATCTTTGCCAACTCCAATTGTTT-AGAGAGAGTTCAAGT-TTCTATGGA 680
Query 645 ATCAAC---CAA-C--AACCAT------AAGACGATCAAAGAGTTAGAATCTATGTCTAG 692
|||||| ||| | || || |||| ||| |||||||||||||||||||||||
Sbjct 681 ATCAACATGCAAGCTTAAAGATAGAGAGAAGATGATGAAAGAGTTAGAATCTATGTCTAG 740
Query 693 GGTTTCGACATCATCCCATCTTCTATTCTCCACTCAATTTGAATATATGAGCGTTG-ACA 751
|||||| || |||||||| || || |||||||||||||| |||| | |||| || | |
Sbjct 741 GGTTTCCACGTCATCCCAACTACTTTTCTCCACTCAATTGGAATTTCCGAGCTTTTTA-A 799
Query 752 ATGAAATA 759
||||||||
Sbjct 800 ATGAAATA 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28439696082
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5