BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53560.1
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938259 jgi|Araly1|938259|scaffold_502450.1 1725 0.0
> Ahg938259 jgi|Araly1|938259|scaffold_502450.1
Length=1063
Score = 1725 bits (934), Expect = 0.0
Identities = 1021/1063 (96%), Gaps = 6/1063 (1%)
Strand=Plus/Plus
Query 36 ATCTATCTCATTCCGCAATCATGGAGTCTCTGGGGAAGCTACAGCTACATCACCAGCCAT 95
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1 ATCTATCTCTTTCCGCAATCATGGAGTCTCTGGGGAAGCTACAACTACATCACCAACCAT 60
Query 96 TTCACCTTTCCTTCACTCACACCTCTTCTTCAACATTCCCCAAAAACCTCTTCA-AATCC 154
|||| ||||||||||||||||| ||||||||| | ||||| ||||||||||||| | ||
Sbjct 61 TTCAACTTTCCTTCACTCACACTTCTTCTTCATCGTTCCCAAAAAACCTCTTCAGGA-CC 119
Query 155 TCAATTCAACCAATTTCATCTCTCAAATCCGCTTCAATTAAAGCTTCGTCCTCCAAATTT 214
||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 120 TCAATTCGACCAATTTCATCTTTCAAATCCGCTTCAATCAAAGCTTCGTCCTCCAAATTT 179
Query 215 CAAAACTCTATCACCCCTCTCCCAAAGTCCACACCTTTCCGTCTCTTCAAATCCACATGC 274
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 180 CAAGACTCTATCACCCCTCTCCCAAAGTCCACACCTTTCCGTCTCTTGAAATCCACATGC 239
Query 275 ATCACTCTAACAACCGCCGCGGCTCTGCTTTTGGCGAATCTCCATCTCAAATCGCCGGCG 334
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 240 ATCACTCTAACAACCGCCGCGGCGCTGCTTTTGGCGAATCTCCACCTCAAATCGCCGGCG 299
Query 335 ATTGCAGCTCCCATCGCGCCTCCGCCGTCAGTTGAAAGCAAAGAAAACGTTACCTTGGAA 394
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATTGCAGCTCCCGTCGCGCCTCCGCCGTCAGTTGAAAGCAAAGAAAACGTTACCTTGGAA 359
Query 395 GAAGAAGAGAGAGCGCTTGATGAGCATTTGATTACTCACCCTTCTGATGTCGACGCTCTT 454
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 GAAGAAGAGAGAGCGCTTGATGAGCATTTGATAACTCACCCTTCTGATGTCGACGCTCTT 419
Query 455 CGTTCATTGATGGAGGTAAAGATCAAATCTCGAAAGCTTACAGAAGCAGTAGAAGTGATC 514
||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 420 CGTTCCTTGATGGAGGTAAAGATCAGATCTCGAAAGCTTACAGAAGCCGTAGAAGTGATC 479
Query 515 GATCGT-TTGATAAAATTGGAACCTGAAGAAAAAGAATGGCCAGTTTTGAAAGCTAACAT 573
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 GATCGTCTT-ATAAAATTGGAACCTGAAGAAAAAGAATGGCCAGTTTTGAAAGCAAACAT 538
Query 574 CTTTACCTACAGTGGAGATCTAGACTTGGCTAAAACTGGATTTGAAGAGATTCTGGCTAA 633
||| ||||||||||||||| |||| || ||||||||||||||||||||||||||||||||
Sbjct 539 CTTCACCTACAGTGGAGATTTAGATTTAGCTAAAACTGGATTTGAAGAGATTCTGGCTAA 598
Query 634 AGATCCGCTTCGTGTTGAAGCTTATCACGGCTTGCTTATGGCTTATTCAGATGCAGGTCT 693
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 599 AGATCCGCTTCGTGTTGAAGCTTATCACGGCTTGCTTATGGCTTATTCCGATGCAGGTCT 658
Query 694 TGATTTGAAAGAGGTGGAGAGTAGAATTGAGGAAGCAATGTTGAAGTGCAAAAAGGAGAA 753
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 659 TGATTTGAAAGAGGTGGAGAGTAGAATTGAGGAAGCAATGTTGAAGTGCAAAAAAGAGAA 718
Query 754 TAATCAAAACGATTTTCGGGATTTTAAGCTACTCGTGGCGCAGATTCGGGTCATTGAAGG 813
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 719 TAATCATAACGATTTTCGGGATTTTAAGCTACTCGTGGCACAGATTCGGGTCATTGAAGG 778
Query 814 AAAACATAGTGAAGCATTGAAGCTTTATCAAGAGCTTGT-AAAGGAGGAACCAAGAGATT 872
||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 779 AAAGCATAGTGAAGCATTGAAGCTTTATCAAGAGCTTGTGAAA-GAGGAACCAAGAGATT 837
Query 873 TTAGGCCGTATCTTTGTCAGGGAATTATATACACATTGCTGAAGAAGAAAGACAAGGCAG 932
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 838 TCAGGCCGTATCTTTGTCAGGGAATAATATACACATTGCTGAAGAAGAAAGACAAGGCAG 897
Query 933 AAGAACAGTTTGATAACTTTCGGAAACTTGTTCCAAAGAATCATCCTTATAGAGAGTATT 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AAGAACAGTTTGATAACTTTCGGAAACTTGTTCCAAAGAATCATCCTTATAGAGAGTATT 957
Query 993 TTATGGATAATATGATAGCAACAAAGCTTTTTTCCGAGAAGGCGCAGCGTGAGATGGCTG 1052
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 958 TTATGGATAATATGATAGCAACAAAGCTTTTTTCGGAGAAGGCGCAGCGTGAGATGGCTG 1017
Query 1053 AGGAGATGGCTGGATCAACTAGTTGATGAGAATATGTGTAATG 1095
|||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1018 AGGAGATGGCTGGATCAAGTAGTTGATGAGATTATGTGTAATG 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52526447855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5