BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53570.1
Length=1927
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938260 jgi|Araly1|938260|scaffold_502451.1 2377 0.0
> Ahg938260 jgi|Araly1|938260|scaffold_502451.1
Length=1451
Score = 2377 bits (1287), Expect = 0.0
Identities = 1396/1447 (96%), Gaps = 13/1447 (1%)
Strand=Plus/Plus
Query 354 TTTGCATTTTTCTAATCCTTTATGCAAAGCAGTGTGTATCGTGATAAAGCTAGCTCGATC 413
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTGCATTTTTATAACCCTTTATGCAAAGCAGTGTGTATCGTGATAAAGCTAGCTCGATC 60
Query 414 GCGATGATCTTAGAAACTCAGAGGAATGTTGAATTCCCTCATCGGATCGTTGATAAGCGT 473
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 GCGATGATCTTGGAAACTCAGAGGAATGTTGAATTCCCTCATAGGATCGTTGATAAGCGT 120
Query 474 CCCAGGAAACGTCCCCGATTGACTTGGGATGCTGCTCCG-C-C-TC-T--T-CT--TCCT 524
||||||||||| || |||||| |||||||||||||| || | | || | | || ||||
Sbjct 121 CCCAGGAAACGGCCTCGATTGGCTTGGGATGCTGCTGCGCCTCTTCTTCCTCCTCCTCCT 180
Query 525 CCTCCTCCTCCACCCACGGTATTTCAACCTCCGTTGTACTATGGTCCGGAGTTTGCGAGT 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCTCCTCCTCCACCCACGGTATTTCAACCTCCGTTGTACTATGGTCCGGAGTTTGCGAGT 240
Query 585 GGTTTAGTTCCCAATTTTGTTTACCCAAACATGTTCTATAATGGCCTTCCTCGTCAGGGC 644
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGAGTAGTTCCCAATTTTGTTTACCCAAACATGTTCTATAATGGCCTTCCTCGTCAGGGC 300
Query 645 TCTCCTCCCTGGAGACCAGATGATAAAGACGGCCATTATGTCTTTGTTGTTGGGGATACT 704
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 TCTCCTCCCTGGAGACCAGATGATAAAGACGGCCATTATGTCTTTGTTGTTGGAGATACT 360
Query 705 TTGACTCCACGATATCAAATTCTCAGCAAAATGGGTGAAGGTACATTTGGACAAGTATTG 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGACTCCACGATATCAAATTCTCAGCAAAATGGGTGAAGGTACATTTGGACAAGTATTG 420
Query 765 GAATGCTTTGATAATAAAAACAAAGAAGTCGTGGCAATCAAAGTTATACGGTCCATAAAC 824
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 GAATGTTTTGATAATAAAAACAAAGAAGTCGTGGCAATCAAAGTTATACGGTCCATAAGC 480
Query 825 AAGTATCGTGAAGCTGCCATGATCGAAATTGACGTGCTGCAGAGGCTTACAAGGCATGAT 884
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 481 AAGTATCGTGAAGCTGCCATGATAGAAATTGACGTGCTGCAAAGGCTTACAAGGCATGAT 540
Query 885 GTCGGTGGTTCTCGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGT 944
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTTGGTGGTTCTCGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGT 600
Query 945 ATTGTATTTGAGAAGCTTGGACCAAGCTTATATGATTTTCTCCGCAAAAACAGCTACCGT 1004
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATTGTATTTGAGAAGCTTGGGCCAAGCTTATATGATTTTCTCCGCAAAAACAGCTACCGT 660
Query 1005 TCATTTCCCATTGATCTTGTTCGGGAGCTTGGCAGACAACTTTTGGAGTCTGTTGCATAT 1064
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 TCATTTCCCATTGACCTTGTTCGGGAGCTTGGCAGACAACTTTTGGAGTCTGTAGCATAT 720
Query 1065 ATGCATGATTTACGGCTGATCCACACGGATTTGAAGCCGGAGAACATTCTTTTGGTATCG 1124
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 ATGCATGATTTACGGCTGATCCACACAGATTTGAAGCCGGAGAACATTCTTTTGGTATCG 780
Query 1125 TCTGAATATATCAAAATACCTGATTATAAGTTTCTATCCCGACCCACAAAAGATGGGTCA 1184
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 781 TCTGAATATATCAAAATACCTGATTATAAGTTTCTGTCACGACCCACGAAAGATGGGTCA 840
Query 1185 TACTTCAAGAATCTGCCCAAGTCAAGTGCCATCAAGCTCATTGATTTCGGAAGTACAACA 1244
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TACTTCAAGAATCTACCCAAGTCAAGTGCCATCAAGCTCATTGATTTCGGAAGTACAACA 900
Query 1245 TTTGAACATCAAGACCATAACTACATTGTATCCACAAGACATTACCGCGCACCAGAAGTT 1304
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 901 TTTGAACATCAAGACCATAACTACATTGTATCCACAAGGCATTACCGCGCACCAGAAGTT 960
Query 1305 ATCCTAGGGGTTGGATGGAACTATCCATGTGATCTGTGGAGTATTGGTTGCATACTTGTT 1364
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 961 ATCTTAGGGGTTGGATGGAACTATCCATGCGATCTGTGGAGTATTGGTTGCATACTTGTT 1020
Query 1365 GAACTTTGTTCGGGAGAGGCGCTTTTCCAAACGCATGAAAACTTGGAACATTTGGCCATG 1424
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1021 GAACTTTGTTCGGGAGAGGCGCTTTTCCAAACGCATGAAAACTTGGAGCATTTGGCCATG 1080
Query 1425 ATGGAAAGGGTCCTAGGACCTTTACCACCTCATATGGTGCTCAGAGCCGACCGGCGCTCT 1484
|||||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1081 ATGGAAAGGGTCTTGGGACCACTACCGCCTCATATGGTGCTCAGAGCCGACCGGCGCTCT 1140
Query 1485 GAGAAATACTTCAGACGAGGTGCGAAGTTAGACTGGCCTGAAGGTGCGACATCAAGAGAC 1544
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1141 GAGAAATACTTCAGGCGAGGCGCAAAGTTAGACTGGCCTGAAGGTGCGACATCAAGAGAC 1200
Query 1545 AGCTTAAAAGCAGTATGGAAACTTCCCCGGCTACCGAACCTGATAATGCAGCATGTGGAT 1604
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AGCTTAAAAGCAGTGTGGAAACTTCCCCGGCTACCGAACCTGATAATGCAGCATGTGGAT 1260
Query 1605 CACTCAGCCGGTGATCTGATAGACCTATTACAAGGTCTGCTTCGATATGATCCAACAGAG 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CACTCAGCCGGTGATCTGATAGACCTATTACAAGGTCTGCTTCGATATGATCCAACAGAG 1320
Query 1665 AGGTTCAAGGCAAGAGAAGCACTGAACCATCCCTTCTTCACAAGAAGCCGGGAACAGAGT 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 AGGTTCAAGGCAAGAGAAGCACTGAACCATCCCTTCTTCACAAGAAGCCGGGAACAGAGT 1380
Query 1725 ATACCACCCTTCAACCCAAACCCTCATCCATTTTTATACAACCaaaagaactaaaaaaga 1784
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1381 ATACC-C--TTCAACCCAAACCCTCATCCATTTTTATACAACCAAAAGAACTAAAAAA-A 1436
Query 1785 aaagaaa 1791
||||||
Sbjct 1437 GAAGAAA 1443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72409555745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5