BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G53570.1 Length=1927 Score E Sequences producing significant alignments: (Bits) Value Ahg938260 jgi|Araly1|938260|scaffold_502451.1 2377 0.0 > Ahg938260 jgi|Araly1|938260|scaffold_502451.1 Length=1451 Score = 2377 bits (1287), Expect = 0.0 Identities = 1396/1447 (96%), Gaps = 13/1447 (1%) Strand=Plus/Plus Query 354 TTTGCATTTTTCTAATCCTTTATGCAAAGCAGTGTGTATCGTGATAAAGCTAGCTCGATC 413 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTTGCATTTTTATAACCCTTTATGCAAAGCAGTGTGTATCGTGATAAAGCTAGCTCGATC 60 Query 414 GCGATGATCTTAGAAACTCAGAGGAATGTTGAATTCCCTCATCGGATCGTTGATAAGCGT 473 ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 61 GCGATGATCTTGGAAACTCAGAGGAATGTTGAATTCCCTCATAGGATCGTTGATAAGCGT 120 Query 474 CCCAGGAAACGTCCCCGATTGACTTGGGATGCTGCTCCG-C-C-TC-T--T-CT--TCCT 524 ||||||||||| || |||||| |||||||||||||| || | | || | | || |||| Sbjct 121 CCCAGGAAACGGCCTCGATTGGCTTGGGATGCTGCTGCGCCTCTTCTTCCTCCTCCTCCT 180 Query 525 CCTCCTCCTCCACCCACGGTATTTCAACCTCCGTTGTACTATGGTCCGGAGTTTGCGAGT 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CCTCCTCCTCCACCCACGGTATTTCAACCTCCGTTGTACTATGGTCCGGAGTTTGCGAGT 240 Query 585 GGTTTAGTTCCCAATTTTGTTTACCCAAACATGTTCTATAATGGCCTTCCTCGTCAGGGC 644 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GGAGTAGTTCCCAATTTTGTTTACCCAAACATGTTCTATAATGGCCTTCCTCGTCAGGGC 300 Query 645 TCTCCTCCCTGGAGACCAGATGATAAAGACGGCCATTATGTCTTTGTTGTTGGGGATACT 704 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 301 TCTCCTCCCTGGAGACCAGATGATAAAGACGGCCATTATGTCTTTGTTGTTGGAGATACT 360 Query 705 TTGACTCCACGATATCAAATTCTCAGCAAAATGGGTGAAGGTACATTTGGACAAGTATTG 764 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TTGACTCCACGATATCAAATTCTCAGCAAAATGGGTGAAGGTACATTTGGACAAGTATTG 420 Query 765 GAATGCTTTGATAATAAAAACAAAGAAGTCGTGGCAATCAAAGTTATACGGTCCATAAAC 824 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 421 GAATGTTTTGATAATAAAAACAAAGAAGTCGTGGCAATCAAAGTTATACGGTCCATAAGC 480 Query 825 AAGTATCGTGAAGCTGCCATGATCGAAATTGACGTGCTGCAGAGGCTTACAAGGCATGAT 884 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 481 AAGTATCGTGAAGCTGCCATGATAGAAATTGACGTGCTGCAAAGGCTTACAAGGCATGAT 540 Query 885 GTCGGTGGTTCTCGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGT 944 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GTTGGTGGTTCTCGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGT 600 Query 945 ATTGTATTTGAGAAGCTTGGACCAAGCTTATATGATTTTCTCCGCAAAAACAGCTACCGT 1004 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 601 ATTGTATTTGAGAAGCTTGGGCCAAGCTTATATGATTTTCTCCGCAAAAACAGCTACCGT 660 Query 1005 TCATTTCCCATTGATCTTGTTCGGGAGCTTGGCAGACAACTTTTGGAGTCTGTTGCATAT 1064 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 661 TCATTTCCCATTGACCTTGTTCGGGAGCTTGGCAGACAACTTTTGGAGTCTGTAGCATAT 720 Query 1065 ATGCATGATTTACGGCTGATCCACACGGATTTGAAGCCGGAGAACATTCTTTTGGTATCG 1124 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 721 ATGCATGATTTACGGCTGATCCACACAGATTTGAAGCCGGAGAACATTCTTTTGGTATCG 780 Query 1125 TCTGAATATATCAAAATACCTGATTATAAGTTTCTATCCCGACCCACAAAAGATGGGTCA 1184 ||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||| Sbjct 781 TCTGAATATATCAAAATACCTGATTATAAGTTTCTGTCACGACCCACGAAAGATGGGTCA 840 Query 1185 TACTTCAAGAATCTGCCCAAGTCAAGTGCCATCAAGCTCATTGATTTCGGAAGTACAACA 1244 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 TACTTCAAGAATCTACCCAAGTCAAGTGCCATCAAGCTCATTGATTTCGGAAGTACAACA 900 Query 1245 TTTGAACATCAAGACCATAACTACATTGTATCCACAAGACATTACCGCGCACCAGAAGTT 1304 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 901 TTTGAACATCAAGACCATAACTACATTGTATCCACAAGGCATTACCGCGCACCAGAAGTT 960 Query 1305 ATCCTAGGGGTTGGATGGAACTATCCATGTGATCTGTGGAGTATTGGTTGCATACTTGTT 1364 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 961 ATCTTAGGGGTTGGATGGAACTATCCATGCGATCTGTGGAGTATTGGTTGCATACTTGTT 1020 Query 1365 GAACTTTGTTCGGGAGAGGCGCTTTTCCAAACGCATGAAAACTTGGAACATTTGGCCATG 1424 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1021 GAACTTTGTTCGGGAGAGGCGCTTTTCCAAACGCATGAAAACTTGGAGCATTTGGCCATG 1080 Query 1425 ATGGAAAGGGTCCTAGGACCTTTACCACCTCATATGGTGCTCAGAGCCGACCGGCGCTCT 1484 |||||||||||| | ||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 1081 ATGGAAAGGGTCTTGGGACCACTACCGCCTCATATGGTGCTCAGAGCCGACCGGCGCTCT 1140 Query 1485 GAGAAATACTTCAGACGAGGTGCGAAGTTAGACTGGCCTGAAGGTGCGACATCAAGAGAC 1544 |||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1141 GAGAAATACTTCAGGCGAGGCGCAAAGTTAGACTGGCCTGAAGGTGCGACATCAAGAGAC 1200 Query 1545 AGCTTAAAAGCAGTATGGAAACTTCCCCGGCTACCGAACCTGATAATGCAGCATGTGGAT 1604 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 AGCTTAAAAGCAGTGTGGAAACTTCCCCGGCTACCGAACCTGATAATGCAGCATGTGGAT 1260 Query 1605 CACTCAGCCGGTGATCTGATAGACCTATTACAAGGTCTGCTTCGATATGATCCAACAGAG 1664 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 CACTCAGCCGGTGATCTGATAGACCTATTACAAGGTCTGCTTCGATATGATCCAACAGAG 1320 Query 1665 AGGTTCAAGGCAAGAGAAGCACTGAACCATCCCTTCTTCACAAGAAGCCGGGAACAGAGT 1724 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 AGGTTCAAGGCAAGAGAAGCACTGAACCATCCCTTCTTCACAAGAAGCCGGGAACAGAGT 1380 Query 1725 ATACCACCCTTCAACCCAAACCCTCATCCATTTTTATACAACCaaaagaactaaaaaaga 1784 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1381 ATACC-C--TTCAACCCAAACCCTCATCCATTTTTATACAACCAAAAGAACTAAAAAA-A 1436 Query 1785 aaagaaa 1791 |||||| Sbjct 1437 GAAGAAA 1443 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72409555745 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5