BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53580.1
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938261 jgi|Araly1|938261|scaffold_502452.1 1888 0.0
> Ahg938261 jgi|Araly1|938261|scaffold_502452.1
Length=1134
Score = 1888 bits (1022), Expect = 0.0
Identities = 1096/1132 (97%), Gaps = 4/1132 (0%)
Strand=Plus/Plus
Query 10 AAATAATCTG-AAGCAGCCATGGAGATAGCCGCCGTTAGCACTGTCTCCGTCGCGCCACA 68
||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 5 AAA-AATCTGAAAGCAGCCATGGAGATAGCCGCCGCTAGCAGTGTCTCCGTCGCGCCACA 63
Query 69 ATCGCG-CAGAGTGTCGAATGCGTTCTCCAGGAATCTAGGATCCGTATCTTCTCTTTCGT 127
|||||| || | ||| ||||| |||||||||||| ||||||||||| |||||||||||||
Sbjct 64 ATCGCGTCA-ACTGTTGAATGTGTTCTCCAGGAAGCTAGGATCCGTCTCTTCTCTTTCGT 122
Query 128 TTGGTTTCTTTGAGAAAGAATATTGCTTTAAGAGCCCTAGCCTTCGTGTGTCTGCAGCAG 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TTGGTTTCTTTGAGAAAGAATATTGCTTTAAGAGCCCTAGCCTTCGTGTGTCTGCAGCAG 182
Query 188 CTTCCATGGACGCCGTCACAGCTGAGAAATTTTCTCCGGCGAGTTTTCTAGACAAAAAAG 247
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CTTCCATGGACGCCGTCACTGCTGAGAAATTTTCTCCGGCGAGTTTTCTAGACAAAAAAG 242
Query 248 AAACCGGAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGGTCG 307
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 243 AAACCGGAGTTCTTCATTTTGTGAAGTACCATGGCCTCGGCAATGACTTCATTTTGGTCG 302
Query 308 ATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCGAAGCTGTGTGATC 367
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 303 ATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCGAAGCTTTGCGATC 362
Query 368 GAAACTTCGGTGTTGGTGCCGATGGAGTGATTTTTGCAATGCCAGGAGTCAATGGTACTG 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GAAACTTCGGTGTTGGTGCCGATGGAGTGATTTTTGCAATGCCAGGAGTCAATGGTACTG 422
Query 428 ATTACGCAATGCGGATTTTCAATTCAGATGGTAGTGAACCAGAGATGTGTGGCAATGGAG 487
||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 ATTACTCTATGCGGATATTCAATTCAGATGGTAGTGAACCAGAGATGTGTGGCAATGGAG 482
Query 488 TTCGATGCTTTGCTAGGTTCATTGCTGAGCTTGAGAATTTGCAGGGAAAACATAGTTTTA 547
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 483 TTCGATGCTTTGCCAGGTTCATTGCTGAGCTTGAGAATTTGCAGGGGAAGCATAGTTTTA 542
Query 548 CAATACATACCGGTGCCGGGTTGATTGTTCCAGAAATTCAAGATGACGGACAGGTTAAGG 607
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 543 CAATACATACCGGTGCTGGCTTGATTGTTCCAGAAATTCAAGATGACGGACAGGTTAAGG 602
Query 608 TTGACATGGGGACACCGATTCTTAAAGCACAAGATGTGCCCACGAAATTGTCAGGGAACA 667
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 603 TTGACATGGGGACACCGATTCTTAAAGCACAAGATGTGCCCACGAAGTTGCCAGGGAACA 662
Query 668 AAGGTGAAGCTGTTGTTGAGGCAGAGCTAGTTGTTGATGGAGTAAGCTGGAATGTGACGT 727
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 663 AAGGTGAAGCTGTTGTTCAGGCAGAGCTAGTTGTTGATGGAGAAAGCTGGAATGTGACGT 722
Query 728 GTGTTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCGAATCTGA 787
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 723 GTGTTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGCGGGCCGAATCTGA 782
Query 788 AAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAGCATCATGAAATGTTCC 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 AAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAGCATCATGAAATGTTCC 842
Query 848 CAGCTCGAACTAACACAGAATTTGTTGAGGTCTTATCACGTTCTCATTTGAAAATGCGTG 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 CAGCTCGAACTAACACAGAATTTGTTGAGGTCTTATCACGTTCTCATTTGAAAATGCGTG 902
Query 908 TGTGGGAGCGCGGAGCAGGAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTG 967
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 903 TGTGGGAGCGCGGAGCAGGAGCAACTTTGGCCTGTGGAACTGGAGCCTGTGCTCTGGTTG 962
Query 968 TTGCAGCAGTCCTTGAAGGTCGAGCCGACAGGAAATGCACGGTGGATCTACCGGGCGGAC 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TTGCAGCAGTCCTTGAAGGTCGAGCCGACAGGAAATGCACGGTGGATCTACCGGGCGGAC 1022
Query 1028 CATTGGAGATAGAGTGGAAACAGGAAGACAACCATATCTACATGACGGGTCCTGCAGAAG 1087
||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1023 CATTGGAAATAGAGTGGAAACAGGAAGACAACCATATCTACATGACAGGTCCTGCGGAAG 1082
Query 1088 CTGTTTTCTATGGATCAGCGCTGCTCTAATGGGCCTTCACAGTCGATGACTT 1139
|||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1083 CTGTTTTCTACGGATCAGCGCTGCTCTAATGGGACTTCACAGTCGATGACTT 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50246004606
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5