BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53600.1
Length=528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485744 jgi|Araly1|485744|fgenesh2_kg.5__1736__AT3G53600.1 881 0.0
> Ahg485744 jgi|Araly1|485744|fgenesh2_kg.5__1736__AT3G53600.1
Length=528
Score = 881 bits (477), Expect = 0.0
Identities = 511/528 (97%), Gaps = 0/528 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAGAGACCGGTCCGATTACGAAGAATCCATGAAGCATATAGACATAGTAGAAAGT 60
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAAGAGAGCGGTCCGATTACGAAGAATCCATGAAGCATATAGACATAGTAGAAAGT 60
Query 61 CTAATGATGTTATCTCGAAGTTTCGTGGTCAAACAAATCGATGTAAAGCAATCTACCGGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAATGATGTTATCTCGAAGTTTCGTGGTCAAACAAATCGATGTAAAGCAATCTACCGGA 120
Query 121 AGCAAAACGAACCATAATAACCACTTCGAATGCAAAACGTGTAACCGGAAATTTGATTCC 180
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCAAAACCAATCATAATAACCACTTCGAATGCAAAACGTGTAACCGGAAATTTGATTCC 180
Query 181 TTCCAAGCTCTTGGAGGTCATAGAGCTAGCCACAAGAAACCTAAGCTGATCGTTGACCAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCCAAGCTCTTGGAGGTCATAGAGCTAGCCACAAGAAACCTAAGCTGATCGTTGACCAA 240
Query 241 GAACAGGTGAAGCATCGTAACAAAGAGAATGATATGCATAAGTGTACAATTTGCGATCAA 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 GAACAGGTGAAGCATCGTAACAATGAGAATGATATGCATAAGTGTACAATTTGCGATCAA 300
Query 301 ATGTTTGGGACCGGTCAAGCTCTAGGCGGTCACATGAGAAAGCATAGGACGAGCATGATA 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGTTTGGGACCGGTCAAGCACTAGGCGGTCACATGAGAAAGCATAGGACGAGCATGATA 360
Query 361 ACCGAGCAATCGATTGTCCCTTCTGTGGTTTATTCCAGACCGGTTTTTAATCGTTGCAGT 420
|||||||||||| || |||||||||| |||||||||||||||||||| |||| |||| |
Sbjct 361 ACCGAGCAATCGGTTATCCCTTCTGTTGTTTATTCCAGACCGGTTTTGAATCAATGCAAT 420
Query 421 AGCAGCAAGGAGATCTTGGACTTAAATCTAACTCCATTGGAAAATGATCTTGTGTTAATC 480
|||| |||| |||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 421 AGCAACAAGAAGATCTTGGACTTAAATCTAACTCCATTAGAGAATGATCTTGTGTTAATC 480
Query 481 TTTGGGAAGAATTTGGTTCCACAAATTGATTTGAAGTTTGTGAATTAG 528
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTGGGAAGAATTTGGTTCCACAAATTGATTTGAAGTTTGTGAATTAG 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19230416856
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5