BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53610.1
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485747 jgi|Araly1|485747|fgenesh2_kg.5__1739__AT3G53610.1 1818 0.0
Ahg906209 jgi|Araly1|906209|Al_scaffold_0003_3337 255 4e-67
> Ahg485747 jgi|Araly1|485747|fgenesh2_kg.5__1739__AT3G53610.1
Length=1068
Score = 1818 bits (984), Expect = 0.0
Identities = 1043/1071 (97%), Gaps = 6/1071 (1%)
Strand=Plus/Plus
Query 11 aaaaaaaaaaaaaaCTTCTGAATCTCCGAAAAAAGCCAATCGGGGGAAGaaaaaaaTTCA 70
||| ||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||||
Sbjct 1 AAACAAAAAAAAATCTTCTGAATCTCCGAAAAAAGCCGATCGGGAGAAGAAAATAATTCA 60
Query 71 ACGGCCGTCTGGTTACTGTCTTGCTTGC-TTCCGACGATCTATCTTCCCCGAGTAGATTT 129
||||||||| |||||||||||||| | | ||||||||||||||||||||||||||||| |
Sbjct 61 ACGGCCGTCCGGTTACTGTCTTGC-TCCGTTCCGACGATCTATCTTCCCCGAGTAGATCT 119
Query 130 GAAATGGCTGCTCCTCCTGCTAGAGCTCGTGCTGATTACGATTACCTCATTAAACTTCTG 189
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAAATGGCTGCTCCTCCTGCTAGAGCTCGTGCTGATTACGATTACCTCATTAAACTTCT- 178
Query 190 C-TGATCGGAGACAGCGGTGTTGGTAAGAGTTGCCTTCTCTTACGTTTCTCAGATGGCTC 248
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CTTGATCGGAGACAGCGGTGTTGGTAAGAGTTGCCTTCTCTTACGTTTCTCAGATGGCTC 238
Query 249 GTTTACCACCAGTTTCATTACAACTATTGGGATTGATTTTAAGATACGGACTATTGAGCT 308
|||||||||||||||||||||||| ||||| |||||||| |||||| ||||||| |||||
Sbjct 239 GTTTACCACCAGTTTCATTACAACGATTGGAATTGATTTCAAGATAAGGACTATAGAGCT 298
Query 309 CGATGGGAAGAGAATTAAGCTGCAAATCTGGGATACTGCCGGACAGGAGCGGTTCCGCAC 368
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 299 CGATGGGAAGAGAATTAAGCTGCAAATCTGGGATACTGCAGGACAGGAGCGGTTCCGCAC 358
Query 369 AATCACAACTGCGTACTACCGTGGAGCCATGGGGATTTTGCTTGTGTATGATGTGACTGA 428
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 359 AATCACAACTGCGTACTACCGTGGAGCCATGGGAATTTTGCTTGTGTATGATGTGACCGA 418
Query 429 TGAATCATCTTTCAACAACATCAGGAATTGGATCCGTAACATTGAGCAGCATGCTTCTGA 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGAATCATCTTTCAACAACATCAGGAATTGGATCCGTAACATTGAGCAGCATGCTTCTGA 478
Query 489 TAGTGTCAACAAGATTCTAGTTGGGAACAAAGCAGATATGGATGAAAGCAAAAGAGCTGT 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TAGTGTCAACAAGATTCTAGTTGGGAACAAAGCAGATATGGATGAAAGCAAAAGAGCTGT 538
Query 549 GCCAAAATCTAAGGGCCAAGCTCTTGCAGATGAATATGGAATGAAGTTTTTCGAGACTAG 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GCCAAAATCTAAGGGCCAAGCTCTTGCAGATGAATATGGAATGAAGTTTTTCGAGACTAG 598
Query 609 TGCCAAGACTAACTTAAACGTTGAGGAAGTTTTCTTCTCTATTGCTAAAGACATTAAGCA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGCCAAGACTAACTTAAACGTTGAGGAAGTTTTCTTCTCTATTGCTAAAGACATTAAGCA 658
Query 669 AAGACTTGCAGATACCGATGCACGAGCTGAGCCGCAAACAATCAAAATCAACCAATCCGA 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AAGACTTGCAGATACCGATGCACGAGCTGAGCCGCAAACAATCAAAATCAACCAATCCGA 718
Query 729 CCAAGGTGCGGGAACATCTCAAGCTACTCAGAAATCAGCATGTTGCGGCACATAAAAATT 788
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TCAAGGTGCGGGAACATCTCAAGCTACTCAGAAATCAGCATGTTGCGGCACATAAAAATT 778
Query 789 GGGTCCACGACGCCTGTCAAAGGAGAGAATCTGGCTAGTGAAAGAGAAATGGTATTTGga 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GGGTCCACGACGCCTGTCAAAGGAGAGAATCTGGCTAGTGAAAGAGAAATGGTATTTGGA 838
Query 849 aagaaaaaatgaaaaaggaaaTCAATCTTCTTTTGCTTTTCTTCTATATGAGATGGTGTT 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 839 AAGAAAAAATGAAAAAGGAAATCAATCTTCTTTTGCTTTTCTTCTATATGAGATG-TGTT 897
Query 909 TCTACGTATTCTTTTAAGATTCTCTCTTTCCC-TAATGGTATAGTGTGACTGTGAAGGAC 967
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 898 GCTACGTGTTCTTTTAAGATTCTCTCTTTCCCCTAATGGTATAGTGTGACTGTGAAGGAC 957
Query 968 ACAATTCGTATTCCATATTTCTGGAATGGATTCTCTGACATCAGATTATGACTTATGATA 1027
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 958 ACAATTCGTATTCCATATTTCTGGAATGTATTCTCTGACATCAGAATATGACTTATGATA 1017
Query 1028 ATATCAGTTTATCTCACTCACACACCAATGATATTGGATTCTATGTATACA 1078
|||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1018 ATATCAGTTTATCTCACTCACACACCAATGATATTGGATTCTTTGTATACA 1068
> Ahg906209 jgi|Araly1|906209|Al_scaffold_0003_3337
Length=168
Score = 255 bits (138), Expect = 4e-67
Identities = 144/147 (98%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 133 ATGGCTGCTCCTCCTGCTAGAGCTCGTGCTGATTACGATTACCTCATTAAACTTCTGCTG 192
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 ATGGCTGCTCCTCCTGCTAGAGCTCGTGCTGATTACGATTTCCTCATTAAACTTCTGCTG 60
Query 193 ATCGGAGACAGCGGTGTTGGTAAGAGTTGCCTTCTCTTACGTTTCTCAGATGGCTCGTTT 252
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 61 ATCGGAGACAGCGGTGTTGGTAAGAATTGCCTCCTCTTACGTTTCTCAGATGGCTCGTTT 120
Query 253 ACCACCAGTTTCATTACAACTATTGGG 279
|||||||||||||||||||||||||||
Sbjct 121 ACCACCAGTTTCATTACAACTATTGGG 147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40295923269
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5