BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53630.1
Length=1028
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485749 jgi|Araly1|485749|fgenesh2_kg.5__1741__AT3G53630.1 1557 0.0
> Ahg485749 jgi|Araly1|485749|fgenesh2_kg.5__1741__AT3G53630.1
Length=1013
Score = 1557 bits (843), Expect = 0.0
Identities = 977/1036 (94%), Gaps = 31/1036 (3%)
Strand=Plus/Plus
Query 1 CTTTCCTATCCCTAAAACCCGAGA--GAGCATCT-TCTTCTCCTCTTAGGGTAGAAGAAG 57
|||||||||||||||||||||||| ||| | | |||||| |||||||||||||||||
Sbjct 1 CTTTCCTATCCCTAAAACCCGAGACCGAG-A-GTATCTTCT--TCTTAGGGTAGAAGAAG 56
Query 58 GACGAAAATC---GGAGGAGGAAGAAGAAGATCGATTCGATT-TGTGATCAACGATGAGC 113
|||| ||||| |||||||||||||||||| || |||||| | |||||||||||||||
Sbjct 57 GACG-AAATCGAAGGAGGAGGAAGAAGAAGA-AGA-TCGATTCT-TGATCAACGATGAGC 112
Query 114 TCCTTCAATGGAAACAGCAACATCGACAACCTCCTAATCCAAACCCTACTTGGACGTCTC 173
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 113 TCCTTCAATGGAAACAGCAACATCGACAACATCCTAATCCAAACCCTACTTGGACGTCTC 172
Query 174 CAAATTCGTCCCCCTAACTCTCATTTCCTCTCTCAATCCCTAGACGACCTCCTCTTCAAA 233
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 173 CAAATCCGTCCCCCTAACTCTCATTTCCTCTCTCAATCCCTAGATGACCTCCTCTTCAAA 232
Query 234 TCCGACGACAGCGACGGCGATGATGACGGAGAAGGTCAGACCAGTCTCGACAGAGAAGAA 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TCCGACGACAGCGACGGCGATGATGACGGAGAAGGTCAGACCAGTCTCGACAGAGAAGAA 292
Query 294 GCTAGGCTTGAGAAAGAGCTAATCCGAGTCATCGTCTCTGGTCGAAGCGATTCTCTCAAG 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 293 GCTAGGCTTGAGAAAGAGCTAATCCGAGTCATCGTCTCTGGTCGAAGCGATTCTCTTAAG 352
Query 354 CCGAATTCAGGTCAAGCCGTGACAGTCAACGAACACCACATCTGCGTTGGGTTTCATGAG 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 353 CCGAATTCAGGTCAAGCCGTGACAGTCAACGAACACCACATCTGCGTTGGGTTTCACGAG 412
Query 414 GATGAGGAATCGGATTATCGTGTTTGGGAGTGGCATGGTCATATCATGTTGTTTGATGAA 473
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 413 GATGAAGAATCGGATTATCGTGTTTGGGAGTGGCATGGTCATATCATGTTGTTCGATGAA 472
Query 474 GAGAATGGGTACACGCCTGAGTATATCTACGGGAATTACTTCGAGAGGTTGCCTGTGAAG 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GAGAATGGGTACACGCCTGAGTATATCTACGGGAATTACTTCGAGAGGTTGCCTGTGAAG 532
Query 534 CTTCCTAATAACCGCCGTGTggagaaggagaagaagaaggagatgaaagaagaggaggtg 593
||||||||| | ||||||| ||||||||||||||| ||| ||||||| |||||||||
Sbjct 533 CTTCCTAAT--C-GCCGTGTAGAGAAGGAGAAGAAGGAGG---TGAAAGAGGAGGAGGTG 586
Query 594 gagaaTTTGGGGCTTAGAGAGTTGATCGATGGTGGTGACGCTGCTCCTGGTAGGATTCTT 653
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 587 GAGAATTTGGGGCTTAGAGAGTTGATCGATGGTGGAGACGCTGCTCGTGGTAGGATTCTT 646
Query 654 CATAGGAACAACATCAACATCGGTTCCTCAAGGGTCTAAGTTCCTAAGAGCGTCTTGGTA 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 647 CATAGGAACAACATCAACATCGGTTCCTCAAGGGTCTAAGTTCCTAAGAGCGTCTTGCCA 706
Query 714 GGGAGAGGTCACATTGTTCGGGAAGATTTCAGATGTGTGAACAACTCGCGACAACAAAAC 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GGGAGAGGTCACATTGTTCGGGAAGATTTCAGATGTGTGAACAACTCGCGACAACAAAAC 766
Query 774 ATAAGGTGCTGGTGGGTCTACGGGTTCTATTCCGTTTTATTTAAACCGGGAAATCCATGG 833
|||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 767 ATAAGGTGCTGGTGAATCTACGGGTTCTATTCCGTTCTATTTGAACCGGGAAATCCATGG 826
Query 834 GTGAATCTGTTTTCTTTAAGAAATTCATCTGAAGTTGTTTCTGAACCAAATTTACAATAC 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GTGAATCTGTTTTCTTTAAGAAATTCATCTGAAGTTGTTTCTGAACCAAATTTACAATAC 886
Query 894 ATGTTAATGAAGAGAGAAAAGATTACAATGCATGGTCATCGAACTCGGAAGCTTTCAAGT 953
||||| |||||||||| |||||||||||| |||||||||||||||| |||||||||
Sbjct 887 ATGTTGATGAAGAGAGTAAAGATTACAATACATGGTCATCGAACTCAGAAGCTTTC---- 942
Query 954 TTCCCCATGTTTGTTTATTTTGTGTTCTTAAATCAGAA-TCATATGTTTTGCTCATTTTA 1012
|| ||||||||||||||||||| ||| || ||| |||||||||||||||||||||
Sbjct 943 --CC--ATGTTTGTTTATTTTGTGTCCTTCGCTC-GAAATCATATGTTTTGCTCATTTTA 997
Query 1013 CAATTCTGCTTTCGAT 1028
||||||||||||||||
Sbjct 998 CAATTCTGCTTTCGAT 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38237285751
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5