BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G53630.1 Length=1028 Score E Sequences producing significant alignments: (Bits) Value Ahg485749 jgi|Araly1|485749|fgenesh2_kg.5__1741__AT3G53630.1 1557 0.0 > Ahg485749 jgi|Araly1|485749|fgenesh2_kg.5__1741__AT3G53630.1 Length=1013 Score = 1557 bits (843), Expect = 0.0 Identities = 977/1036 (94%), Gaps = 31/1036 (3%) Strand=Plus/Plus Query 1 CTTTCCTATCCCTAAAACCCGAGA--GAGCATCT-TCTTCTCCTCTTAGGGTAGAAGAAG 57 |||||||||||||||||||||||| ||| | | |||||| ||||||||||||||||| Sbjct 1 CTTTCCTATCCCTAAAACCCGAGACCGAG-A-GTATCTTCT--TCTTAGGGTAGAAGAAG 56 Query 58 GACGAAAATC---GGAGGAGGAAGAAGAAGATCGATTCGATT-TGTGATCAACGATGAGC 113 |||| ||||| |||||||||||||||||| || |||||| | ||||||||||||||| Sbjct 57 GACG-AAATCGAAGGAGGAGGAAGAAGAAGA-AGA-TCGATTCT-TGATCAACGATGAGC 112 Query 114 TCCTTCAATGGAAACAGCAACATCGACAACCTCCTAATCCAAACCCTACTTGGACGTCTC 173 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 113 TCCTTCAATGGAAACAGCAACATCGACAACATCCTAATCCAAACCCTACTTGGACGTCTC 172 Query 174 CAAATTCGTCCCCCTAACTCTCATTTCCTCTCTCAATCCCTAGACGACCTCCTCTTCAAA 233 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 173 CAAATCCGTCCCCCTAACTCTCATTTCCTCTCTCAATCCCTAGATGACCTCCTCTTCAAA 232 Query 234 TCCGACGACAGCGACGGCGATGATGACGGAGAAGGTCAGACCAGTCTCGACAGAGAAGAA 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 233 TCCGACGACAGCGACGGCGATGATGACGGAGAAGGTCAGACCAGTCTCGACAGAGAAGAA 292 Query 294 GCTAGGCTTGAGAAAGAGCTAATCCGAGTCATCGTCTCTGGTCGAAGCGATTCTCTCAAG 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 293 GCTAGGCTTGAGAAAGAGCTAATCCGAGTCATCGTCTCTGGTCGAAGCGATTCTCTTAAG 352 Query 354 CCGAATTCAGGTCAAGCCGTGACAGTCAACGAACACCACATCTGCGTTGGGTTTCATGAG 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 353 CCGAATTCAGGTCAAGCCGTGACAGTCAACGAACACCACATCTGCGTTGGGTTTCACGAG 412 Query 414 GATGAGGAATCGGATTATCGTGTTTGGGAGTGGCATGGTCATATCATGTTGTTTGATGAA 473 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 413 GATGAAGAATCGGATTATCGTGTTTGGGAGTGGCATGGTCATATCATGTTGTTCGATGAA 472 Query 474 GAGAATGGGTACACGCCTGAGTATATCTACGGGAATTACTTCGAGAGGTTGCCTGTGAAG 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 473 GAGAATGGGTACACGCCTGAGTATATCTACGGGAATTACTTCGAGAGGTTGCCTGTGAAG 532 Query 534 CTTCCTAATAACCGCCGTGTggagaaggagaagaagaaggagatgaaagaagaggaggtg 593 ||||||||| | ||||||| ||||||||||||||| ||| ||||||| ||||||||| Sbjct 533 CTTCCTAAT--C-GCCGTGTAGAGAAGGAGAAGAAGGAGG---TGAAAGAGGAGGAGGTG 586 Query 594 gagaaTTTGGGGCTTAGAGAGTTGATCGATGGTGGTGACGCTGCTCCTGGTAGGATTCTT 653 ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 587 GAGAATTTGGGGCTTAGAGAGTTGATCGATGGTGGAGACGCTGCTCGTGGTAGGATTCTT 646 Query 654 CATAGGAACAACATCAACATCGGTTCCTCAAGGGTCTAAGTTCCTAAGAGCGTCTTGGTA 713 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 647 CATAGGAACAACATCAACATCGGTTCCTCAAGGGTCTAAGTTCCTAAGAGCGTCTTGCCA 706 Query 714 GGGAGAGGTCACATTGTTCGGGAAGATTTCAGATGTGTGAACAACTCGCGACAACAAAAC 773 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 707 GGGAGAGGTCACATTGTTCGGGAAGATTTCAGATGTGTGAACAACTCGCGACAACAAAAC 766 Query 774 ATAAGGTGCTGGTGGGTCTACGGGTTCTATTCCGTTTTATTTAAACCGGGAAATCCATGG 833 |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 767 ATAAGGTGCTGGTGAATCTACGGGTTCTATTCCGTTCTATTTGAACCGGGAAATCCATGG 826 Query 834 GTGAATCTGTTTTCTTTAAGAAATTCATCTGAAGTTGTTTCTGAACCAAATTTACAATAC 893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 827 GTGAATCTGTTTTCTTTAAGAAATTCATCTGAAGTTGTTTCTGAACCAAATTTACAATAC 886 Query 894 ATGTTAATGAAGAGAGAAAAGATTACAATGCATGGTCATCGAACTCGGAAGCTTTCAAGT 953 ||||| |||||||||| |||||||||||| |||||||||||||||| ||||||||| Sbjct 887 ATGTTGATGAAGAGAGTAAAGATTACAATACATGGTCATCGAACTCAGAAGCTTTC---- 942 Query 954 TTCCCCATGTTTGTTTATTTTGTGTTCTTAAATCAGAA-TCATATGTTTTGCTCATTTTA 1012 || ||||||||||||||||||| ||| || ||| ||||||||||||||||||||| Sbjct 943 --CC--ATGTTTGTTTATTTTGTGTCCTTCGCTC-GAAATCATATGTTTTGCTCATTTTA 997 Query 1013 CAATTCTGCTTTCGAT 1028 |||||||||||||||| Sbjct 998 CAATTCTGCTTTCGAT 1013 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38237285751 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5