BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53640.1
Length=1929
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485754 jgi|Araly1|485754|fgenesh2_kg.5__1746__AT3G53640.1 2488 0.0
Ahg484347 jgi|Araly1|484347|fgenesh2_kg.5__339__AT3G25840.1 900 0.0
> Ahg485754 jgi|Araly1|485754|fgenesh2_kg.5__1746__AT3G53640.1
Length=1917
Score = 2488 bits (1347), Expect = 0.0
Identities = 1775/1967 (90%), Gaps = 88/1967 (4%)
Strand=Plus/Plus
Query 1 ATGGTGAGCGATAAGATAGTAGAATCAAGCCACCGCAAACACCGTAGGTCGTATTCTCCT 60
|||||||| |||||||| |||||||||| ||||||||||||||| |||||||||| ||
Sbjct 1 ATGGTGAGAGATAAGATGGTAGAATCAAACCACCGCAAACACCGCCGGTCGTATTCGCCG 60
Query 61 TCCGACGAAGTCGTTAAATCTTCCAAGCGGCACAAGCACCATCATCACAAG---CATC-- 115
||||| ||||||||||||||||| |||||||| || ||||||||||||||| ||||
Sbjct 61 TCCGAAGAAGTCGTTAAATCTTCGAAGCGGCAAAAACACCATCATCACAAGCACCATCAT 120
Query 116 GA-CAC-AGTCATC-ATCTTGA-TGAGGA-CGGCAATGAAAAGAATGTTTATCCAT-T-T 168
|| ||| || |||| | | | | | | | ||||| |||||| || || || | |
Sbjct 121 GATCACAAG-CATCGA-C-ACAGTCATCATC-TTGATGAAGAGAATG-TT-TCTATGTCT 174
Query 169 TTGGGGAATCCTGGTAACGATGGTGAACTTGATTTGGAGGAAGGGGAGAATTTGAAGAAG 228
|| || || ||| |||||||||||| |||||||||||||| |||| ||||
Sbjct 175 TT-AGG------GG--ACGGTGGTGAACTTGAGATGGAGGAAGGGGAG-ATTT--CGAAG 222
Query 229 AAGGGAAGCATTGATAGAGAAAGCAATAGAGACAACTACAGAGGTAGGAGTAGTAGAGAT 288
| |||||||||||||||||| |||||||||||| ||||| | | | |||||||| ||
Sbjct 223 AGGGGAAGCATTGATAGAGATAGCAATAGAGACCACTAC--A-G-A--AGTAGTAG-GA- 274
Query 289 AAAGCTAGGTCTAGTAGTAGAGAGACTGggagggagaatgaaagagagagacgtaaggat 348
|| || | || | || | || || ||||||||||||||||||||| |||| |||
Sbjct 275 GGAG-TA-G---AG-A-TA-A-AG-CT---AGGGAGAATGAAAGAGAGAGAAGTAAAGAT 321
Query 349 caagatagggatagaggaagaagagaagaccagagtgatcaggagaTCTATAAAAGTGGT 408
||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||
Sbjct 322 CAAGATAGGGATAGAGGAACAAGAGAACTTCAGAGTGATCAGGAGAAGTATAAAAGTGGT 381
Query 409 GGTGATGGATATGGGGAAGTTAGGCATGATGCAGAAGATGACTTAGATTCTTTAAAAAGC 468
|||||||||||||||||||| |||| || |||||||||||||||||| ||||| ||
Sbjct 382 GGTGATGGATATGGGGAAGTGAGGC---AT---GAAGATGACTTAGATTCTGTAAAAGGC 435
Query 469 CATAAACCTAAC----G--G--T----GAAACTCAGGGCAACGTTGAAAGGTCTGAAGTT 516
|||||||||||| | | | |||||||| ||||||||||||| ||| ||| |
Sbjct 436 CATAAACCTAACGGTTGCAGTTTCCAAGAAACTCAAGGCAACGTTGAAAAGTCAGAAACT 495
Query 517 GATAATGATGATGACGGTGAAGATGTTGTTTGGGGAGTTGAAGAACAAGAAGCTGCAGAG 576
|||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||
Sbjct 496 GATAATGATGATGAAGGTGATGATGTTGTTTGGGAAGTTGAAGAACAAGAAGCTTTAGAC 555
Query 577 ATGAAAAGAATCGAGGAAAGCAAGAGGATTACGCAAGCCATATTGGAGAAATATAAGAAA 636
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 556 CTGAATAGAATCGAGGAAAGCAGGAGGATTACGCAAGCCATATTGGAGAAATATAAGAAA 615
Query 637 AAGTTGGAGCAGTCCTCTACTGTGGCAGATGTTCAAGCTAAAGCTGGGTTGGATACTGAG 696
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 616 AAGTTGGAGCAGTCCTCTACTGTGGCAGATGTTCAAGCTAAAGTTGGGTTGGATACTGAG 675
Query 697 GCCGTAGATGGTGAAGTCGCCAAGCTATCTTCAG-CAGTTGGGGAAACACCTGCACGGCT 755
|| ||||| ||||||||||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 676 GCGGTAGACGGTGAAGTCGCCAAGCTATCTTC-GACAGTTGGGGAATCACCTGCACGGCT 734
Query 756 TGTGATATCAGACTCAGATATGACACTAGCTTCCGC------------AGGCAGCCCAAA 803
|||||| ||||||| | ||| ||||||||||||||| ||||||||||||
Sbjct 735 TGTGATTTCAGACTTACATAGGACACTAGCTTCCGCAGGGGTTGAGGAAGGCAGCCCAAA 794
Query 804 GAGTGACATGTTCAGTGATGATATCTTTGGGGAGTCTCCTCTAGCTGATGGTACTCGGAA 863
|| |||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||
Sbjct 795 GAATGACATGTTCAGTGATGATATCTTTGGGGAGTCT-C-C-AGCTGCTGGTACTCGGAA 851
Query 864 AGGGAAT-GCACTTGTTCCTTTTGTAAGGAGTGGACTCAATGATAATTGGGATGATGCAG 922
||| ||| || ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 852 AGGAAATGGC-CTTGTTCCTTTTGTAAGGAGTGGACTCCATGATAATTGGGATGATGCAG 910
Query 923 AAGGTTATTACAGTTATCAGCTTGGTGAACTACTTGATGATAGATATGAAATCATGGCTA 982
|||| || |||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 911 AAGGATACTACAGTTATCAGTTTGGTGAACTACTTGATGATAGGTATGAAATCATGGCTA 970
Query 983 CTCATGGGAAAGGTGTATTCTCTACCGTGGTGCGTGCAAAAGACACAAAACCTGAGCTAG 1042
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 971 CTCATGGAAAAGGTGTCTTCTCTACCGTGGTGCGGGCAAAAGACACAAAACCTGAACTAG 1030
Query 1043 GTGAACCTGAGGAAGTGGCTATAAAAATTATTCGGAAAAATGAGACAATGCATAAGGCTG 1102
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1031 CTGAACCTGAGGAAGTGGCTATAAAATTTATTCGGAACAATGAGACAATGCATAAGGCTG 1090
Query 1103 GCCAGGCTGAGATTCGGATATTGAAGAAGCTAGTTTGCTCTGACCCAGAGAATAAGCACC 1162
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct 1091 GCCAGGCTGAGATTCGGATATTGAAGAAGCTAGCTGGCTCTGACCCAGAGAATAAGCGCC 1150
Query 1163 ACTGCGTCCGTCTTCTTTCAACTTTTGAATATAGGAACCACCTTTGCTTGGTGTTTGAGT 1222
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1151 ACTGCGTCCGTCTTCTTTCAACTTTTAAATATAGGAACCACCTTTGCTTGGTGTTTGAGT 1210
Query 1223 CTCTTCATCTGAATCTCCGTGAAGTTGTGAAGAAGATTGGTGTCAACATTGGTCTAAAAC 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 CTCTTCATCTGAATCTCCGTGAAGTTGTGAAGAAGATTGGTGTCAACATTGGTCTAAAAC 1270
Query 1283 TATATGATGTTAGAGTGTATGCTGAGCAGTTATTCATATCCCTTAAACATCTCAAGAACT 1342
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1271 TATCTGATGTTAGAGTGTATGCTGAGCAGTTATTCATATCCCTTAAACATCTCAAGAATT 1330
Query 1343 GTGGGGTTCTTCACTGCGATATAAAGCCTGATAACATACTAATGAATGAGGGAAGAAACA 1402
||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||
Sbjct 1331 GTGGGGTTCTTCACTGCGATATAAAGCCTGACAACATACTAGTGAATGAGGGGAGAAACA 1390
Query 1403 TGTTAAAGCTTTGTGATTTTGGTAGTGCAATGTTTGCTGGTGAAAACCAAGTTACACCAT 1462
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 TGTTAAAGCTTTGTGACTTTGGTAGTGCAATGTTTGCTGGTGAAAACCAAGTTACACCAT 1450
Query 1463 ATCTTGTTAGTCGTTTCTACAGAGCTCCAGAAATCATTCTTGGACTACCCTACGACCATC 1522
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1451 ATCTTGTTAGTCGCTTCTACAGAGCTCCAGAAATCATTCTTGGACTATCCTACGACCATC 1510
Query 1523 CGTTAGATATTTGGTCAGTTGGTTGTTGTCTGTATGAGCTTTATAGCGGGAAAATTATGT 1582
|||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 1511 CGTTAGATATCTGGTCTGTGGGTTGTTGCCTGTATGAGCTTTATAGCGGGAAAATTATGT 1570
Query 1583 TCCCTGGCTCCACAAACAATGATATGTTACGCCTGCATATGGAACTGAAAGGTCCCTTCC 1642
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1571 TCCCTGGCTCCACAAACAATGATATGTTACGCCTTCATATGGAACTGAAAGGTCCCTTCC 1630
Query 1643 CTAAAAAGATGCTTCGCAAAGGAGCATTTATCGATCAACACTTTGATAAGGACTTATGCT 1702
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1631 CTAAAAAGATGCTTCGCAAAGGAGCATTTATCGATCAGCACTTCGATAAGGACTTATGCT 1690
Query 1703 TCTATGCTACAGAGGAGGATAGTGTTACTGGAAAGACAATAAGGAGAATAATGGTCAACG 1762
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1691 TCTATGCTACAGAGGAGGATAGTGTTACTGGAAAGACCATAAGGAGAATAATGGTAAACA 1750
Query 1763 TAAAGCCAAAAGATTTAGGTTCAGTAATTAGACGACGTTATGAGGATGAAGATCCCAAGG 1822
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1751 TAAAGCCAAAAGATTTAGGTTCAGTAATTAGACGACGTTATGAGGATGAAGATCCCAAAG 1810
Query 1823 TGTTGGTTCATTTCAGGAATCTTTTGGACAAAATTTTCACACTTGATCCTCAAAAGAGAC 1882
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1811 TGTTGGTTCATTTCAGGAATCTTCTGGACAAAATTTTCACACTTGATCCTCAAAAGAGAC 1870
Query 1883 TTACAGTGTCACAGGCATTAGCTCACCCATTCATCACGGGCAAGTGA 1929
||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1871 TTACAGTGTCACAGGCATTAGCTCACCCATTCATCACGGGCAAATGA 1917
> Ahg484347 jgi|Araly1|484347|fgenesh2_kg.5__339__AT3G25840.1
Length=3152
Score = 900 bits (487), Expect = 0.0
Identities = 946/1159 (82%), Gaps = 66/1159 (6%)
Strand=Plus/Plus
Query 807 TGACATG-TTCAGTGATGATATCTTTGGGGAGTCTCCTCTAGCTGATGGTACTCGG-AA- 863
||||||| |||| ||||||||||||||| ||||| || | ||||| | || |||| ||
Sbjct 1693 TGACATGTTTCA-TGATGATATCTTTGGAGAGTC-CC-C-AGCTGGT-GT--TCGGAAAG 1745
Query 864 ----AGGG-AA--TGCACT--TGTTCCTTTTGTAAGGAGTGGAC-TCAATGATAATTGGG 913
|||| || || | | |||||| | || ||||| || | || ||||||||||||
Sbjct 1746 TGGGAGGGAAAGGTG-A-TGGTGTTCCCATGGTGAGGAGCGGGCTTC-ATGATAATTGGG 1802
Query 914 ATGATGCAGAAGGTTATTACAGTTATCAGCTTGGTGAACTACTTGATGATAGATATGAAA 973
|||||||||| |||||||| || |||||| |||| || ||||||||| ||||||||||
Sbjct 1803 ATGATGCAGAGGGTTATTATAGCTATCAGTTTGGCGAGTTACTTGATGGTAGATATGAAG 1862
Query 974 TCATGGCTACTCATGGGAAAGGTGTATTCTCTACCGTGGTGCGTGCAAAAGACACAAAAC 1033
|||| ||||||||||| |||||||| |||||||| ||||| ||||| |||||| |||
Sbjct 1863 TCATTGCTACTCATGGAAAAGGTGTCTTCTCTACTGTGGTTCGTGCGAAAGACTTGAAAG 1922
Query 1034 CT-GAGCTAGGTGAACCTGAGGAAGTGGCTATAAAAATTATTCGGAAAAATGAGACAATG 1092
|| || | || ||||||||| || ||||||||||||||||| || || |||||||| |||
Sbjct 1923 CTGGA-CCAGCTGAACCTGAAGAGGTGGCTATAAAAATTATCCGTAACAATGAGACGATG 1981
Query 1093 CATAAGGCTGGCCAGGCTGAGATTCGGATATTGAAGAAGCTAGTTTGCTCTGACCCAGAG 1152
||||| |||||| || |||| ||| |||||||||||||| | | || |||||| ||||
Sbjct 1982 CATAAAGCTGGCAAGATTGAGGTTCAAATATTGAAGAAGCTGGCTGGCGCTGACCGAGAG 2041
Query 1153 AATAAGCACCACTGCGTCCGTCTTCTTTCAA-CTTTTGAA-TATAGGAACCACCTTTGCT 1210
| | || |||||| || ||| ||||||||| | ||| || || | || ||||||||||
Sbjct 2042 GACAGGCGCCACTGTGTTCGTTTTCTTTCAAGC-TTT-AAGTACCGTAATCACCTTTGCT 2099
Query 1211 TGGTGTTTGAGTCTCTTCATCTGAATCTCCGTGAAGT-TGTGAAGAAGATTGGT-GTCAA 1268
||||||||||||| || ||| ||||||| ||||| || | |||||||| ||||| | |||
Sbjct 2100 TGGTGTTTGAGTCGCTCCATTTGAATCTTCGTGAGGTCT-TGAAGAAGTTTGGTCG-CAA 2157
Query 1269 CATTGGTCTAAAACTATATGATGTTAGAG-TGTATGCTGAGCAGTTATTCATAT-CCCTT 1326
||||||||| |||| | || |||||| | | ||| | ||||| ||||||| | |||||
Sbjct 2158 CATTGGTCTCCAACTCTCTGCTGTTAGGGCT-TATTCAAAGCAGCTATTCAT-TGCCCTT 2215
Query 1327 AAACATCTCAAGAACTGTGGGGTTCTTCACTGCGATATAAAGCCTGATAACATACTAATG 1386
|||||||| ||||| |||||||||||||||||||||||||| ||||| ||||| || |
Sbjct 2216 AAACATCTGAAGAATTGTGGGGTTCTTCACTGCGATATAAAACCTGACAACATGCTGGTC 2275
Query 1387 AATGA-GGGAAGAAACATGTTAAAGCTTTGTGATTTTGGTAGTGCAATGTTTGCTGGTGA 1445
|| || ||||| ||| |||||||||||||||| || |||| ||||||||||||||| |
Sbjct 2276 AACGAGGGGAA-AAATGTGTTAAAGCTTTGTGACTTCGGTAATGCAATGTTTGCTGGCAA 2334
Query 1446 AAACCAAGTTACACCATATCTTGTTAGTCG-TTTCTACAGAGCTCCAG-AA--A-TCA-T 1499
|||| |||||||||| |||||||||||||| ||| |||||| | || | || | | | |
Sbjct 2335 AAACGAAGTTACACCGTATCTTGTTAGTCGCTTT-TACAGATCCCCTGAAATTAGTAAGT 2393
Query 1500 -TCTTGGACTAC-CCTACGACCATCCGTTAGATATTTGGTCAGTTGGTTGTTGTCTGTAT 1557
||| || || | |||| ||||||||||| ||||| ||||| ||||| || |||||||||
Sbjct 2394 ATCTGGGTCT-CACCTATGACCATCCGTTGGATATATGGTCTGTTGGCTGCTGTCTGTAT 2452
Query 1558 GAGCTTTATAGCGGGAAAA-TTATGTTCCCTGGCTCCACAAACAATGATATGTTACGCCT 1616
||||||||||| |||||| || | ||||||||| |||||||||||||||||||||| ||
Sbjct 2453 GAGCTTTATAG-TGGAAAAGTTCTTTTCCCTGGCGCCACAAACAATGATATGTTACGACT 2511
Query 1617 GCATATGGAACTGAAAGGTCCCTTCCCTAAAAAGATGCTTCGCAAAGGAGCATTTATCGA 1676
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 2512 TCATATGGAACTGAAAGGTCCCTTCCCTAAAAAGATGCTTCGCAAGGGAGCATTTATTGA 2571
Query 1677 TCAACACTTTGATAAGGACTT-ATGCTTCTATGCTACAGAGGAGGATAGTGTTACTGGAA 1735
||| ||||||||| | ||||| | ||| |||||||||||||| || | |||| |||||
Sbjct 2572 TCAGCACTTTGATCATGACTTGAA-CTTTTATGCTACAGAGGAAGACACCGTTAGTGGAA 2630
Query 1736 AGACA-AT-AAGGAGAATAATGGTCAACGTAAAGCCAAAAGATTTAGGTTCAGTAATTAG 1793
|| | || || ||||| || || |||||||||||||||||||| |||||| | ||||
Sbjct 2631 AG-CTGATTAAA-AGAATGATCGTAAACGTAAAGCCAAAAGATTTTGGTTCAATCATTAA 2688
Query 1794 ACGACGTTATGA-GGATGAAGATCCCAAGGTGTTGGTTCATTTCAGGAATCTTTTGGACA 1852
| | |||| || ||| ||||||||| |||| | ||||||||| |||| |||||||
Sbjct 2689 A-G--GTTACCCTGG-TGAGGATCCCAAGATGTTAGCACATTTCAGGGATCTCTTGGACA 2744
Query 1853 AAATTTTCA-CACTTGATCCTCAAAAG-AGACTTACAGTGTCACAGGCATTAGCTCACCC 1910
|||| |||| | |||||||| | | || ||||| || |||||||||||||||||||||||
Sbjct 2745 AAATGTTCATC-CTTGATCC-CGAGAGGAGACTGACTGTGTCACAGGCATTAGCTCACCC 2802
Query 1911 ATTCATCACGGGCAAGTGA 1929
||||||||| |||||||||
Sbjct 2803 ATTCATCACTGGCAAGTGA 2821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72485736235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5