BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53650.1
Length=417
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898300 jgi|Araly1|898300|Al_scaffold_0005_2266 477 3e-134
Ahg489144 jgi|Araly1|489144|fgenesh2_kg.6__2278__AT5G22880.1 331 2e-90
Ahg484983 jgi|Araly1|484983|fgenesh2_kg.5__975__AT3G46030.1 305 1e-82
Ahg939636 jgi|Araly1|939636|scaffold_600180.1 302 2e-81
Ahg482740 jgi|Araly1|482740|fgenesh2_kg.4__1800__AT2G37470.1 285 2e-76
Ahg484977 jgi|Araly1|484977|fgenesh2_kg.5__969__AT3G45980.1 281 2e-75
> Ahg898300 jgi|Araly1|898300|Al_scaffold_0005_2266
Length=294
Score = 477 bits (258), Expect = 3e-134
Identities = 276/285 (97%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 123 gaagaaatcgaagaagaaCATCGAGACGTACAAGATCTACATCTTCAAGGTTCTGAAACA 182
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 3 GAAGAAATCGAAGAAGAACATCGAGACGTACAAGATCTACATCTTCAAGGTTTTGAAGCA 62
Query 183 AGTTCATCCTGATATCGGAATCTCCGGGAAAGCGATGGGGATCATGAACAGTTTCATCAA 242
||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 63 AGTTCATCCAGATATCGGAATCTCTGGGAAAGCGATGGGAATCATGAACAGTTTCATCAA 122
Query 243 CGACATCTTCGAGAAACTAGCTCAGGAATCATCGCGATTGGCTAGGTACAACAAGAAACC 302
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 123 CGACATCTTCGAGAAACTCGCTCAGGAATCATCGCGATTGGCTAGGTACAACAAGAAGCC 182
Query 303 GACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTGTTGCCTGGAGAGCTCTC 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 183 GACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTGTTGCCTGGAGAACTCTC 242
Query 363 GAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTACTAAATTCAC 407
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 243 GAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTACAAAATTCAC 287
> Ahg489144 jgi|Araly1|489144|fgenesh2_kg.6__2278__AT5G22880.1
Length=526
Score = 331 bits (179), Expect = 2e-90
Identities = 252/287 (88%), Gaps = 6/287 (2%)
Strand=Plus/Plus
Query 115 aagaagaagaagaaatcgaagaagaaCATCGAGACGTACAAGATCTACATCTTCAAGGT- 173
||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 143 AAGAAGAAGAAGAGATCTAAGAAGAACGTCGAGACGTACAAGATCTACATCTTCAAGGTG 202
Query 174 TCTGAAACAAGTTCATCCTGATATCGGAATCTCCGGGAAAGCGATGGGGATCATGAACAG 233
| |||||||||||||||| |||||||||||||| | ||||| ||||| |||||||||||
Sbjct 203 T-TGAAACAAGTTCATCCAGATATCGGAATCTCAAGCAAAGCCATGGGAATCATGAACAG 261
Query 234 TTTCATCAACGACATCTTCGAGAAACTAGCTCAG-GAATCATCG-CGATTGGCTAGGTAC 291
|||||||||||| ||||| |||||||| ||| | || || ||| | || || ||||||
Sbjct 262 TTTCATCAACGATATCTTTGAGAAACTTGCT-GGTGAGTCTTCGAAGCTT-GCGAGGTAC 319
Query 292 AACAAGAAACCGACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTGTTGCCT 351
|||||||| |||||||| |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 320 AACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACGGCGGTGAGACTTGTGTTGCCT 379
Query 352 GGAGAGCTCTCGAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTAC 398
|| ||| | | ||||| |||||||||||||| ||||||||||||||
Sbjct 380 GGTGAGTTGGCAAAACATGCTGTTTCTGAAGGGACTAAGGCGGTTAC 426
> Ahg484983 jgi|Araly1|484983|fgenesh2_kg.5__975__AT3G46030.1
Length=565
Score = 305 bits (165), Expect = 1e-82
Identities = 341/422 (81%), Gaps = 28/422 (7%)
Strand=Plus/Plus
Query 11 AAG-CGGCAGAGAAGAAACCGGCTGG-GAAG-AAGC--CAGCAGAAAAAGCTCCGGCaga 65
||| |||||||||||||||| | ||| | || || | ||| || ||||||||||| ||
Sbjct 88 AAGCCGGCAGAGAAGAAACCAG-TGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGA 146
Query 66 gaa-attacc-aaaggcggagaagaaga-tcacc-aaggaa---ggtggaagcgaaaaga 118
||| | ||| |||| ||| ||||| | || || || ||| || | ||| | | |
Sbjct 147 GAAGA-AACCAAAAGCCGG-CAAGAA-ACTC-CCGAAAGAAGCCGGCGCCGGCGGAGACA 202
Query 119 agaagaagaa-atcgaagaagaaCA---TCGAGACGTACAAGATCTACATCTTCAAGGTT 174
|||||||||| || ||||||||| | | ||||| ||||||||||||||||||||||||
Sbjct 203 AGAAGAAGAAGAT-GAAGAAGAAGAGTGTTGAGACATACAAGATCTACATCTTCAAGGTT 261
Query 175 CTGAAACAAGTTCATCCTGATATCGGAATCTCCGGGAAAGCGATGGGGATCATGAACAGT 234
||||| ||||||||||| ||||| |||||||| | ||||| ||||| ||||||||||||
Sbjct 262 CTGAAGCAAGTTCATCCAGATATTGGAATCTCAAGCAAAGCTATGGGAATCATGAACAGT 321
Query 235 TTCATCAACGACATCTTCGAGAAACTAGC-TCAGGAATCATCGC-GATTGGCTAGGTACA 292
||||| ||||| |||||||||||| | || || |||||| ||| | ||| ||||||| |
Sbjct 322 TTCATTAACGATATCTTCGAGAAATTGGCATC-GGAATCGTCGAAGCTTG-CTAGGTATA 379
Query 293 ACAAGAAACCGACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTG-TTGCCT 351
| ||||| || ||||| |||||| |||| |||||||| || || |||||||| || |||
Sbjct 380 ATAAGAAGCCAACGATTACTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTCTT-CCT 438
Query 352 GGAGAGCTCTCGAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTACTAAATTCACTAGC 411
|| |||||| |||||||||||||||||||||| |||||||| || ||||||||||| |||
Sbjct 439 GGTGAGCTCGCGAAACACGCTGTTTCTGAAGGAACTAAGGCTGTGACTAAATTCACCAGC 498
Query 412 TC 413
||
Sbjct 499 TC 500
> Ahg939636 jgi|Araly1|939636|scaffold_600180.1
Length=439
Score = 302 bits (163), Expect = 2e-81
Identities = 294/355 (83%), Gaps = 17/355 (5%)
Strand=Plus/Plus
Query 72 accaaaggcggagaagaagatcaccaaggaaggtgg-a--agc--ga--a--aagaagaa 122
|||||||||||||||||||||| | || ||||| || | ||| || | ||||||||
Sbjct 65 ACCAAAGGCGGAGAAGAAGATCGCGAAAGAAGGAGGAACGAGCGAGATTATTAAGAAGAA 124
Query 123 gaagaa-atcgaagaagaaCATC-GAGACGTACAAGATCTACATCTTCAAGGT-TCTGAA 179
|||||| | ||||||||| || | ||||||||||||||||||||||||||||| | ||||
Sbjct 125 GAAGAAGA-CGAAGAAGAGCA-CGGAGACGTACAAGATCTACATCTTCAAGGTAT-TGAA 181
Query 180 ACAAGTTCATCCTGATATCGGAATCTCCGGGAAAGCGATGGGGATCATGAACAGTTTCAT 239
||| |||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct 182 ACAGGTTCATCCAGATATCGGAATCTCTGGTAAAGCAATGGGAATCATGAACAGTTTCAT 241
Query 240 CAACGACATCTTCGAGAAACTAGCTCAGGAATCATCGCGAT-TGGCTAGGTACAACAAGA 298
||||||||| || |||||||| ||||||||||| || || | | ||| | ||||| ||||
Sbjct 242 CAACGACATTTTTGAGAAACTCGCTCAGGAATCGTCTCG-TCTCGCTCGTTACAATAAGA 300
Query 299 AACCGACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTGTTGCCTGGAGAGC 358
||||||| ||||| ||||| ||||| || || || ||||||||||| |||||||| ||
Sbjct 301 AACCGACCATCACGTCTCGTGAAATCCAAACCGCTGTGAGACTTGTTTTGCCTGGTGAAT 360
Query 359 TCTCGAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTACTAAATTCACTAGCTC 413
| | || || ||||| |||||||| || || || || || |||||||| |||||
Sbjct 361 TGGCTAAGCATGCTGTCTCTGAAGGAACCAAAGCCGTCACCAAATTCACAAGCTC 415
> Ahg482740 jgi|Araly1|482740|fgenesh2_kg.4__1800__AT2G37470.1
Length=488
Score = 285 bits (154), Expect = 2e-76
Identities = 229/266 (86%), Gaps = 2/266 (1%)
Strand=Plus/Plus
Query 143 TCGAGACGTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCTGATATCGGAA 202
||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 123 TCGAGACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATGTTGGAA 182
Query 203 TCTCCGGGAAAGCGATGGGGATCATGAACAGTTTCATCAACGACATCTTCGAGAAACTAG 262
|||| |||||||| ||||| || ||||||||||||||||| || |||||||||||||| |
Sbjct 183 TCTCTGGGAAAGCTATGGGAATTATGAACAGTTTCATCAATGATATCTTCGAGAAACTTG 242
Query 263 CTCAGGAATCATCGC-GATTGGCTAGGTACAACAAGAAACCGACGATCACTTCTCGGGAA 321
|||||||||| || | | | |||| ||||||||||| |||||||| || || ||||
Sbjct 243 CTCAGGAATCGTCAAAGCTCG-CTAGATACAACAAGAAGCCGACGATTACATCGAGGGAG 301
Query 322 ATTCAGACGGCGGTGAGACTTGTGTTGCCTGGAGAGCTCTCGAAACACGCTGTTTCTGAA 381
||||| || || ||||||||||||||||||||||| ||| | || || || ||||| |||
Sbjct 302 ATTCAAACTGCTGTGAGACTTGTGTTGCCTGGAGAACTCGCTAAGCATGCGGTTTCAGAA 361
Query 382 GGCACTAAGGCGGTTACTAAATTCAC 407
||||| ||||||||||| ||||||||
Sbjct 362 GGCACGAAGGCGGTTACCAAATTCAC 387
> Ahg484977 jgi|Araly1|484977|fgenesh2_kg.5__969__AT3G45980.1
Length=673
Score = 281 bits (152), Expect = 2e-75
Identities = 257/306 (84%), Gaps = 13/306 (4%)
Strand=Plus/Plus
Query 113 aaaagaagaagaagaaatcgaagaagaaCATCGAGACGTACAAGATCTACATCTTCAAGG 172
|||||||||||| | || |||||||| ||||||| ||||||||||||||||||||||
Sbjct 225 AAAAGAAGAAGATG-AA--GAAGAAGAGTGTCGAGACTTACAAGATCTACATCTTCAAGG 281
Query 173 TTCTGAAACAAGTTCATCCTGATATCGGAATCTCCGGG-AAAGCGATGGGGATCATGAAC 231
||||||| ||||||||||| ||||| || || || | | ||||| ||||| |||||||||
Sbjct 282 TTCTGAAGCAAGTTCATCCAGATATTGGTATTTC-GAGCAAAGCTATGGGAATCATGAAC 340
Query 232 AGTTTCATCAACGACATCTTCGAGAAACTAGC-TCAGGAATCATCGC-GATTGGCTAGGT 289
|||||||||||||| |||||||||||| | || || |||||| ||| | ||| | ||||
Sbjct 341 AGTTTCATCAACGATATCTTCGAGAAATTGGCATC-GGAATCGTCGAAGCTTG-CGAGGT 398
Query 290 ACAACAAGAAACCGACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTG-TTG 348
| || ||||| |||||||| |||||| |||| |||||||| || || |||||||| ||
Sbjct 399 ATAATAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTCTT- 457
Query 349 CCTGGAGAGCTCT-CGAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTACTAAATTCAC 407
||||| ||||| | ||||||||||||||||||| || ||||||||||| || ||||||||
Sbjct 458 CCTGGTGAGCT-TGCGAAACACGCTGTTTCTGAGGGAACTAAGGCGGTGACCAAATTCAC 516
Query 408 TAGCTC 413
|||||
Sbjct 517 CAGCTC 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14995146477
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5