BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53668.1
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485755 jgi|Araly1|485755|fgenesh2_kg.5__1747__AT3G53670.1 1031 0.0
Ahg938556 jgi|Araly1|938556|scaffold_502747.1 268 6e-71
> Ahg485755 jgi|Araly1|485755|fgenesh2_kg.5__1747__AT3G53670.1
Length=1202
Score = 1031 bits (558), Expect = 0.0
Identities = 653/698 (94%), Gaps = 10/698 (1%)
Strand=Plus/Plus
Query 581 CGAGTTACTTTTGGATATGAGCTCTGTCTGTGGTGGGTTGGATTTCAAAGATGCAGAGAG 640
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 507 CGAGTTACTTTTGGATATGAGCTCTGCCTGTGGTGGGTTGGATTTCAAAGATGCAGAGAG 566
Query 641 CAGCTCTGCTTCCAGTCCCATTATATGTTCTACTGG--CGT-AAAGCATATCTCTTGTGT 697
| |||||||||||||||||| || |||||||| ||| | | |||||||||||||||| |
Sbjct 567 CGGCTCTGCTTCCAGTCCCAATAAATGTTCTAATGGCTCATCAAAGCATATCTCTTGTCT 626
Query 698 TGGATCTGATGATGCTCAAGAGTCTGATGGTGATGATAGTGGTTATATACACCAA-ACTG 756
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 627 CGGATCTGAAGATGCTCAAGAGTCTGATGGTGATGATAGTGGTTATATACACCAATA-TG 685
Query 757 TGATTGAAGAATCCAAAGACAAGGCGATCAGCGAACCCATCCCTGAGTCTTTACCTCTCA 816
|||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||
Sbjct 686 TGATTGAAGATTCCAAAGACAAGGCGATCAGTGAGCCCATCCTTGAGTCTTTACCTCTTG 745
Query 817 ATTCTTTGGATGATGAAAGTGAAGATAAGAACCTTGCTA-CTGCATTGCAAGACATGTTC 875
| ||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 746 AGTCTTTGGATGATGAAAGTGAAGATAAGAACCTTGC-ATCCGCATTGCAAGACATGTTC 804
Query 876 TCTGAGAGTATGAGTGTGGTTACTCTGATTCCTGCCATTAAAGGTGGTCGAGAGAAGCAT 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 TCTGAGAGTATGAGTGTGGTTACTCTGATTCCTGCCATTAAAGGTGGTCGAGAGAAGCAT 864
Query 936 GGCAAGTCACTCGAGAAGCTCAGTGTGTCATGGGCTGAAGATGTGTATGATCCTCCTCCC 995
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 865 GGCAAGTCACTCGAGAAGCTGAGAGTGTCATGGGCTGAAGATGTGTATGATCCTCCACCT 924
Query 996 TCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAACCGCAGAAATCAAAGAGCAAAGAC 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 TCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAACCGCAGAAATCAAAGAGCAAAGAC 984
Query 1056 AACCTGAAGAAGAATGGAAAGAAAGGACAAAAGGGAAGCAGCAATTCCCGCAGCAGCAAA 1115
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 985 AACCTGAAGAAGAATGGAAAGAAAGGACAAAAGGGAAGCAGCCATTCCCGTGGCAGCAAA 1044
Query 1116 GACAAGAAGCAGATTTCTTCACGCAGCAGCA--AA-TACAGTCGTGATAAGTTTGATTGG 1172
|||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct 1045 GACAAGAAGCAGATTTCTTCTCGCAGCAGCAGCAAATACAGTCGTGATAAGTTTGATTGG 1104
Query 1173 ACAACACAAATGTCTGTTCTAGCTGCATCTTCTTGAATCTGTGTGGTATGACCAAGGCTC 1232
||||||||||||||||||||||||| ||||||||||||||||| | || |||||||| |
Sbjct 1105 GCAACACAAATGTCTGTTCTAGCTGCGTCTTCTTGAATCTGTGTAGCATCACCAAGGCAC 1164
Query 1233 TTGCGTCTTCCTTGCTCTTGtctctctctctctctctT 1270
||||||||||| | ||||| |||||||| |||||||||
Sbjct 1165 TTGCGTCTTCCGTACTCTTTTCTCTCTCACTCTCTCTT 1202
Score = 477 bits (258), Expect = 9e-134
Identities = 321/348 (92%), Gaps = 18/348 (5%)
Strand=Plus/Plus
Query 105 CGGATTCTTGTTACCATGATTCGGCTATAGTGTTTGTCGCCTC----TGATTGTCTCAAG 160
||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 58 CGGATTCTTGTTACCATGATTCGGCTATAGTGTTTGT-GCCTCTGATTGATTGTCCCAAG 116
Query 161 CATCGTTCTTTACTGATTTTTAGA--TAGCTCTGAGATCTGTCTCTGCGATTCGTCGGAT 218
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 117 CATCGTTCTTTACTGATTTTTAGAGGTATCTCTGAGATCTGTCTCTGCGATTCGTCGGAT 176
Query 219 TTGAATT--CGtttttttttttGGGTAGCTCTTGGATTTCTTCTTCTAGGGTTTCCAAGA 276
||| ||| |||||||||||| | | | ||||||||||||||||||||| || ||||
Sbjct 177 TTG-ATTAGGGTTTTTTTTTTT---T-G-TTTTGGATTTCTTCTTCTAGGGTATCGAAGA 230
Query 277 GGATAGAGAAAATGCGGGTGTCCTCTGAGATACTCCTTCTTTCTTTGGTTCCGGCGTTGA 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 GGATAGAGAAAATGCGGGTGTCCTCTGAGATACTCCTTCTTTCTTTGGTTCCGGCGTTGA 290
Query 337 CTTTTTATCATTCTGGTTTAAGTTCTAATCGTTTGAAACCTCTTCAAAAGAGTGATTGGC 396
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 291 CTTTTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAACCTCTTCAAAAGAGTGATTGGC 350
Query 397 GTGGTAATCTTAGTTAAACAACA-ATTTCTCTGttttttt-gtttctc 442
||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 351 GTGGTAATCTTAGTTAAACAA-AGATTTCTCTGTTTTTCAAGTTTCTC 397
> Ahg938556 jgi|Araly1|938556|scaffold_502747.1
Length=344
Score = 268 bits (145), Expect = 6e-71
Identities = 174/187 (93%), Gaps = 5/187 (3%)
Strand=Plus/Plus
Query 916 AAGGTGGTCGAGAGAAGCATGGCAAGTCACTCGAGAA-GCTCAG-TGTGTCATGGGCTGA 973
||||||||||||||||||||||||||||||||||||| ||| || | ||||||||||||
Sbjct 4 AAGGTGGTCGAGAGAAGCATGGCAAGTCACTCGAGAAAGCTGAGCT-TGTCATGGGCTGG 62
Query 974 AGATGTGTATGATCCTCCT-CCCTCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAAC 1032
|||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 63 AGATATGTATGATCCTC-TACCCTCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAAC 121
Query 1033 CGCAGAAATCAAAGAGCAAAGACAACCTGAAGAAGAATGGAAAGAAAGGACAAAAGGGAA 1092
||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||
Sbjct 122 CGCAGAAATCAAAGAGCAAAGACAATCTGAAGATGAATGGAAAGAAAGGACTTAAGGGAA 181
Query 1093 GCAGCAA 1099
||||||
Sbjct 182 TCAGCAA 188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52259816140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5