BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53690.1
Length=1193
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938278 jgi|Araly1|938278|scaffold_502469.1 1465 0.0
Ahg922479 jgi|Araly1|922479|scaffold_103760.1 634 0.0
Ahg925203 jgi|Araly1|925203|scaffold_200764.1 610 7e-174
Ahg952076 jgi|Araly1|952076|scaffold_35500001.1 597 6e-170
Ahg946986 jgi|Araly1|946986|scaffold_703215.1 597 6e-170
Ahg891370 jgi|Araly1|891370|Al_scaffold_0007_3356 569 1e-161
Ahg887317 jgi|Araly1|887317|Al_scaffold_1046_1 499 2e-140
Ahg924918 jgi|Araly1|924918|scaffold_200479.1 492 3e-138
Ahg908029 jgi|Araly1|908029|Al_scaffold_0002_1110 276 3e-73
> Ahg938278 jgi|Araly1|938278|scaffold_502469.1
Length=1009
Score = 1465 bits (793), Expect = 0.0
Identities = 944/1015 (93%), Gaps = 17/1015 (2%)
Strand=Plus/Plus
Query 1 CTAATTAGAATCATTTTTGAAATGGCGACACAGTCAGTTAACGCAGTGATCGTTGATCTT 60
|||||| |||||| ||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1 CTAATTGGAATCA-TTTTGAAATGGCGACACAGTCTGTTAACGCGGTGATCGTTGATCTT 59
Query 61 CCCGGAGATGTAAACGACGACGGCGATAATTCCGATTGTTTCATCTTCTCCACTC-CTCC 119
||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 60 CCCGGAGATGTAAACGACGACGGCGATAATTCCGATTGTTTCATCTTCTCCTC-CACTCC 118
Query 120 TCTCTCTGCACGTGGTTCCACAAAGCGTGATGCTATTTCCGTTGAGAATTACGATCGTGA 179
||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 119 TCTATCTGCTCGTGGTTCCACCAAGCGTGACGCTATTTCCGTTGAGAATTACGATCGTGA 178
Query 180 TCGGAAACTTCAACGTCTCTGGGTCTACCCTCCTCACAAAACCGTAATCAAGTCAGAATC 239
||| ||||||||||||||||||||||||||||||||||| | | |||||| ||||||||
Sbjct 179 TCGCAAACTTCAACGTCTCTGGGTCTACCCTCCTCACAACAGAGCAATCAAATCAGAATC 238
Query 240 TCCAATTTACATAGATCTTGATCTTTACGATGATGAAGACGATGATATCAGAATCCTCTG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TCCAATTTACATAGATCTTGATCTTTACGATGATGAAGACGATGATATCAGAATCCTCTG 298
Query 300 TTTCGCACCACCAAT-C-CA-C--A----GAGAAAAGGGTCAGTCTTCTTCGTCAAAGAC 350
|||| |||||||||| | || | | ||||||||||||||||||||||||| |||
Sbjct 299 TTTCCCACCACCAATCCACACCAAATCTTTAGAAAAGGGTCAGTCTTCTTCGTCAGCGAC 358
Query 351 GGCGACTTTCGACTGTGAGATATGTGTTGATTCAAAATCCATAATTGAGTCGTTTCGTAT 410
|| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 359 GGTTACTTTCGACTGTGAGATATGTGTTGAAACAAAATCCATAATTGAATCGTTTCGTAT 418
Query 411 CGGTGGATGCTCTCACTTCTACTGCAACGACTGTGTTTCGAAATATATAGCAGCTAAATT 470
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 419 CGGTGGATGCTCTCACTTCTACTGCAACGATTGTGTCTCGAAATATATAGCAGCTAAATT 478
Query 471 ACAAGACAACATTCTCTCAATCGAATGTCCTGTCTCTGGTTGTTCTGGTCGGCTCGAGCC 530
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 479 ACAAGACAACATTCTCTCGATCGAGTGTCCTGTCTCTGGTTGCTCTGGTCGGCTCGAGCC 538
Query 531 AGATCAGTGTCGTCAGATTTTGCCTAA-AGAGGTTTTTGATCGGTGGGGTGATGCTTTGT 589
|||||||||||||| || ||||| || |||||||||||||||||||||||||||||||
Sbjct 539 TGATCAGTGTCGTCAAATCTTGCC-AAGGGAGGTTTTTGATCGGTGGGGTGATGCTTTGT 597
Query 590 GTGAAGCAGTAGTGATGCGTTCGAAGAAATTCTACTGTCCTTACAAGGATTGCTCTGCTT 649
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 598 GTGAAGCAGTAGTGATGCGTTCGAAGAGATTCTACTGTCCTTACAAGGATTGCTCTGCTT 657
Query 650 TGGTTTTCTTAGAAGAGAGTGAAGTAAAGATGAAAGATTCGGAGTGTCCTCATTGTCATA 709
|| ||||| | || ||||||||||| ||||||||| || |||||||||||||| ||||
Sbjct 658 TGCTTTTCATGGACGAGAGTGAAGT---GATGAAAGACTCAGAGTGTCCTCATTGCCATA 714
Query 710 GAATGGTGTGTGTGGAGTGTGGGACTCAGTGGCATCCGGAGATGACTTGCGAGGAGTTTC 769
||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 715 GAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATGACTTGTGAGGAGTTTC 774
Query 770 AGAAGCTAGCGGCGAACGAGAGAGGAAGAGATGATATTTTGCTTGCGACGATGGCAAAGC 829
|||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 775 AGAATCTAGCGGAGAACGAAAGAGGAAGAGATGATATTTTGCTTGCGACGATGGCAAAGA 834
Query 830 AAAAGAAATGGAAAAGATGTCCTTCTTGCAAATTCTATATTGAGAAATCTCAGGGTTGCT 889
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 835 AAAAGAAATGGAAAAGATGTCCTTCTTGCAAATTCTATATTGAGAAGTCTCATGGTTGCT 894
Query 890 TATACATGAAGTGCAGGTGTGGGTTGGCTTTTTGCTACAACTGTGGAACTCCATCGAGGG 949
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 895 TATACATGAAGTGCAGGTGTGGGTTGGCTTTTTGCTACAACTGTGGAACGCCATCCAGGG 954
Query 950 ACCATACTCATTATTGTTATAATTGTAAGCGTTGATATTTAGCATCAGCATTTCT 1004
||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 955 ACCATTCTCATTATTGTTATAATTGTAAGCGTTGATGTTTAGCATCAGTATTTCT 1009
> Ahg922479 jgi|Araly1|922479|scaffold_103760.1
Length=656
Score = 634 bits (343), Expect = 0.0
Identities = 450/500 (90%), Gaps = 14/500 (3%)
Strand=Plus/Plus
Query 418 TGCTCTCACTTCTACTGCAACGACTGTGTTTCGAAATATATAGCAGCTAAATTACAAGAC 477
||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||
Sbjct 109 TGCTCTCACTTCTACTGCAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAGAC 168
Query 478 AACATTCTCTCAATCGAATGTCCTGTCTCTGGTT------GTTCTGGTCGGCTCGAGCCA 531
||||| ||||||||||| |||| ||||||||||| | ||||||||||||||||||
Sbjct 169 AACATCCTCTCAATCGAGTGTCTTGTCTCTGGTTGCGAGAGCTCTGGTCGGCTCGAGCCA 228
Query 532 GATCAGTGTCGTCAGATTTTGCCTAA-AGAGGTTTTTGATCGGTGGGGTGATGCT-TTGT 589
||| |||||||||| || ||||| || |||||||||||||| ||||||||||||| || |
Sbjct 229 GATAAGTGTCGTCAAATCTTGCC-AAGAGAGGTTTTTGATCAGTGGGGTGATGCTCTT-T 286
Query 590 GTGAAGCAGTAGTGATGCGTTCGAAGAAATTCTACTGTCCTTACAAGGATTGCTCTGCTT 649
|||||||||| |||||||||| |||| ||| || |||||||| ||||||||||||||||
Sbjct 287 CTGAAGCAGTATTGATGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTGCTT 346
Query 650 TGGTTTTC-TTAGAAGAGAGTGAAGTAAAGATGAAAGATTCGGAGTGTCCTCATTGTCAT 708
|| ||||| || || ||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct 347 TGCTTTTCATT-GACGAGAGTGAAGTGAAGATGAAAGATTCGGAGTGTTCTCATTGCCAT 405
Query 709 AGAATGGTGTGTGTGGAGTGTGGGACTCAGTGGCATCCGGAGATGACTTGCGAGGAGTTT 768
|||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 406 AGAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACTTGCGAGGAGTTT 465
Query 769 CAGAAGCTAGCGGCGAACGAGAGAGGAAGAGATGATATTTTGCTTGCGACGATGGCAAAG 828
||||||||||| | ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 466 CAGAAGCTAGCAGAAAACGAAAGAGGAAGAGATGATATTTTGCTCGCGACGATGGCAAAG 525
Query 829 CAAAAGAAATGGAAAAGATGTCCTTCTTGCAAA-TTCTATATTGAGAAATCTCAGGGTTG 887
|||||||||||||||||||| |||||||||| || ||||||||||| |||||||||||
Sbjct 526 AAAAAGAAATGGAAAAGATGTTATTCTTGCAAACTT-TATATTGAGAAGTCTCAGGGTTG 584
Query 888 CTTATACATGAAGTGCAGGT 907
||||||||||||||||||||
Sbjct 585 CTTATACATGAAGTGCAGGT 604
> Ahg925203 jgi|Araly1|925203|scaffold_200764.1
Length=710
Score = 610 bits (330), Expect = 7e-174
Identities = 442/494 (89%), Gaps = 16/494 (3%)
Strand=Plus/Plus
Query 426 CTTCTACTGCAACGACTGTGTTTCGAAATATATAGCAGCTAAATTACAAGACAACATTCT 485
||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||| ||
Sbjct 75 CTTCTACTGCAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAGACAACATCCT 134
Query 486 CTCAATCGAATGTCCTGTCTCTGGTT------GTTCTGGTCGGCTCGAGCCAGATCAGTG 539
||||||||| |||| ||||||||||| | ||||||||||||||||||||| ||||
Sbjct 135 CTCAATCGAGTGTCTTGTCTCTGGTTGCAAGAGCTCTGGTCGGCTCGAGCCAGATAAGTG 194
Query 540 TCGTCAGATTTTGCCTAA-AGAGGTTTTTGATCGGTGGGGTGATGCT-TTGTGTGAAGCA 597
|||||| || ||||| || |||||||||||||| ||||| ||||||| || | |||||||
Sbjct 195 TCGTCAAATCTTGCC-AAGAGAGGTTTTTGATCAGTGGGATGATGCTCTT-TCTGAAGCA 252
Query 598 GTAGTGATGCGTTCGAAGAAATTCTACTGTCCTTACAAGGATTGCTCTGCTTTGGTTTTC 657
||| |||||||||| |||| ||| || |||||||| |||||||||||||||||| |||||
Sbjct 253 GTATTGATGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTGCTTTGCTTTTC 312
Query 658 -TTAGA-AGAGAGTGAAGTAAAGATGAAAGATTCGGAGTGTCCTCATTGTCATAGAATGG 715
|| || | |||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 313 ATT-GACA-AGAGTGAAGTGAAGATGAAAGATTCGGAGTGTCCTCATTGCCATAGAATGG 370
Query 716 TGTGTGTGGAGTGTGGGACTCAGTGGCATCCGGAGATGACTTGCGAGGAGTTTCAGAAGC 775
||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 371 TGTGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACTTGCGAGGAGTTTCAGAAGC 430
Query 776 TAGC-GGCGAACGAGAGAGGAAGAGATGATATTTTGCTTGCGACGATGGCAAAGCAAAAG 834
|||| || |||||| |||||||||||| |||||||||| ||||||||||||||| |||||
Sbjct 431 TAGCAGG-GAACGAAAGAGGAAGAGATAATATTTTGCTCGCGACGATGGCAAAGAAAAAG 489
Query 835 AAATGGAAAAGATGTCCTTCTTGCAAATTCTATATTGAGAAATCTCAGGGTTGCTTATAC 894
|| |||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 490 AACTGGAAAAGATGTTATTCTTGCAAACTCTATATTGAGAAGTCTCAGGGTTGCTTATAC 549
Query 895 ATGAAGTGCAGGTG 908
||||| ||||||||
Sbjct 550 ATGAAATGCAGGTG 563
> Ahg952076 jgi|Araly1|952076|scaffold_35500001.1
Length=755
Score = 597 bits (323), Expect = 6e-170
Identities = 446/503 (89%), Gaps = 18/503 (4%)
Strand=Plus/Plus
Query 418 TGCTCTCA-CTTCTACTGCAACGACTGTGTTTCGAAATATATAGCAGCTAAATTACAAGA 476
|||||| | |||||||| |||||| ||||| |||||||||||||| || |||||||||||
Sbjct 112 TGCTCT-ACCTTCTACTACAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAGA 170
Query 477 CAACATTCTCTCAATCGAATGTCCTGTCTCTGGTT------GTTCTGGTCGGCTCGAGCC 530
|||||| ||||||||||| |||| ||||||||||| | |||||||||||||||||
Sbjct 171 CAACATCCTCTCAATCGAGTGTCTTGTCTCTGGTTGCAAGAGCTCTGGTCGGCTCGAGCC 230
Query 531 AGATCAGTGTCGTCAGATTTTGCCTAA-AGAGGTTTTTGATCGGTGGGGTGATGCT-TTG 588
|||| |||||||||| || ||||| || |||||||||||||| ||||| ||||||| ||
Sbjct 231 AGATAAGTGTCGTCAAATCTTGCC-AAGAGAGGTTTTTGATCAGTGGGATGATGCTCTT- 288
Query 589 TGTGAAGCAGTAGTGATGCGTTCGAAGAAATTCTACTGTCCTTACAAGGATTGCTCTGCT 648
| |||||||||| |||||||||| |||| ||| || |||||||| |||||||||||| ||
Sbjct 289 TCTGAAGCAGTATTGATGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTACT 348
Query 649 TTGGTTTTC-TTAGA-AGAGAGTGAAGTAAAGATGAAAGATTCGGAGTGTCCTCATTGTC 706
||| ||||| || || | |||||||||| ||||||||||||||||||||||||||||| |
Sbjct 349 TTGCTTTTCATT-GACA-AGAGTGAAGTGAAGATGAAAGATTCGGAGTGTCCTCATTGCC 406
Query 707 ATAGAATGGTGTGTGTGGAGTGTGGGACTCAGTGGCATCCGGAGATGACTTGCGAGGAGT 766
|||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||
Sbjct 407 ATAGAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACTTGCGAGGAGT 466
Query 767 TTCAGAAGCTAGC-GGCGAACGAGAGAGGAAGAGATGATATTTTGCTTGCGACGATGGCA 825
||||||||||||| || |||||| |||||||||||| |||||| ||| ||||||||||||
Sbjct 467 TTCAGAAGCTAGCAGG-GAACGAAAGAGGAAGAGATAATATTTCGCTCGCGACGATGGCA 525
Query 826 AAGCAAAAGAAATGGAAAAGATGTCCTTCTTGCAAATTCTATATTGAGAAATCTCAGGGT 885
||| ||||||| |||||||||||| |||||||||| ||||||||||||| |||||||||
Sbjct 526 AAGAAAAAGAACTGGAAAAGATGTTATTCTTGCAAACTCTATATTGAGAAGTCTCAGGGT 585
Query 886 TGCTTATACATGAAGTGCAGGTG 908
|||||||||||||| ||||||||
Sbjct 586 TGCTTATACATGAAATGCAGGTG 608
> Ahg946986 jgi|Araly1|946986|scaffold_703215.1
Length=941
Score = 597 bits (323), Expect = 6e-170
Identities = 447/504 (89%), Gaps = 20/504 (4%)
Strand=Plus/Plus
Query 418 TGCTCTCA-CTTCTACTGCAACGACTGTGTTTCGAAATATATAGCAGCTAAATTACAAGA 476
|||||| | ||||||||||||||| ||||| |||||||||||||| || |||||||||||
Sbjct 115 TGCTCT-ACCTTCTACTGCAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAGA 173
Query 477 CAACATTCTCTCAATCGAATGTCCTGTCTCTGGTT------GTTCTGGTCGGCTCGAGCC 530
|||||| ||||||||||| |||| ||||||||||| | |||| ||||||||||||
Sbjct 174 CAACATCCTCTCAATCGAGTGTCTTGTCTCTGGTTGCAAGAGCTCTGTTCGGCTCGAGCC 233
Query 531 AGATCAGTGTCGTCAGATTTTGCCTAA-AGAGGTTTTTGATCGGTGGGGTGATGCT-TTG 588
|||| |||||||||| || ||||| || |||||||||||||| ||||| ||||||| ||
Sbjct 234 AGATAAGTGTCGTCAAATCTTGCC-AAGAGAGGTTTTTGATCAGTGGGATGATGCTCTT- 291
Query 589 TGTGAAGCAGTAGTGATGCGTTCGAAGAAATTCTACTGTCCTTACAAGGATTGCTCTGCT 648
| |||||||||| |||||||||| |||| ||| || |||||||| |||||||||||||||
Sbjct 292 TCTGAAGCAGTATTGATGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTGCT 351
Query 649 TTGGTTTTC-TTAGA-AGAGAGTGAAGTAAAGATGAAAGATTCGGAGTGTCCTCATTGTC 706
||| ||||| || || | |||||||||| |||||||||||||||||||||||||||| ||
Sbjct 352 TTGCTTTTCATT-GACA-AGAGTGAAGTGAAGATGAAAGATTCGGAGTGTCCTCATT-TC 408
Query 707 -ATAGAATGGTGTGTGTGGAGTGTGGGACTCAGTGGCATCCGGAGATGACTTGCGAGGAG 765
|||||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||
Sbjct 409 CATAGAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCTGAGATAACTTGCGAGGAG 468
Query 766 TTTCAGAAGCTAGC-GGCGAACGAGAGAGGAAGAGATGATATTTTGCTTGCGACGATGGC 824
|||||||||||||| || |||||| |||||||||||| |||||||||| |||||||||||
Sbjct 469 TTTCAGAAGCTAGCAGG-GAACGAAAGAGGAAGAGATAATATTTTGCTCGCGACGATGGC 527
Query 825 AAAGCAAAAGAAATGGAAAAGATGTCCTTCTTGCAAATTCTATATTGAGAAATCTCAGGG 884
|||| ||||||| |||||||||||| |||||||||| ||||||||||||| ||||||||
Sbjct 528 AAAGAAAAAGAACTGGAAAAGATGTTATTCTTGCAAACTCTATATTGAGAAGTCTCAGGG 587
Query 885 TTGCTTATACATGAAGTGCAGGTG 908
||||||||||||||| ||||||||
Sbjct 588 TTGCTTATACATGAAATGCAGGTG 611
> Ahg891370 jgi|Araly1|891370|Al_scaffold_0007_3356
Length=513
Score = 569 bits (308), Expect = 1e-161
Identities = 408/454 (90%), Gaps = 15/454 (3%)
Strand=Plus/Plus
Query 415 GGA-TGCTCTCACTTCTACTGCAACGACTGTGTTTCGAAATATATAGCAGCTAAATTACA 473
||| ||||||||||||||||||||||| ||||| || ||||||||||| || ||||||||
Sbjct 63 GGACTGCTCTCACTTCTACTGCAACGATTGTGTCTCTAAATATATAGCTGCAAAATTACA 122
Query 474 AGACAACATTCTCTCAATCGAA-TGTCCTGTCTCTGGTT------GTTCTGGTCGGCTCG 526
||||||||| ||||||||| || |||| ||||||||||| | |||||||||||||
Sbjct 123 AGACAACATCCTCTCAATC-AAGTGTCTTGTCTCTGGTTGCGAGAGCTCTGGTCGGCTCG 181
Query 527 AGCCAGATCAGTGTCGTCAGAT-TTTGCCTAAAGAGGTTTTTGATCGGTGGGGTGATGCT 585
||| |||| ||||||||||||| || ||| | |||||||||||||| |||||||||||||
Sbjct 182 AGCTAGATAAGTGTCGTCAGATCTTGGCC-AGAGAGGTTTTTGATCAGTGGGGTGATGCT 240
Query 586 -TTGTGTGAAGCAGTAGTGATGCGTTCGAAGAAATTCTACTGTCCTTACAAGGATTGCTC 644
|| | ||||| |||| |||||||||| |||||||||||||||||||| |||||||||||
Sbjct 241 CTT-TCTGAAGAAGTATTGATGCGTTCAAAGAAATTCTACTGTCCTTATAAGGATTGCTC 299
Query 645 TGCTTTGGTTTTC-TTAGAAGAGAGTGAAGTAAAGATGAAAGATTCGGAGTGTCCTCATT 703
||||||| ||||| || || ||||||||||| |||||||||||||| |||||||||||||
Sbjct 300 TGCTTTGCTTTTCATT-GACGAGAGTGAAGTGAAGATGAAAGATTCAGAGTGTCCTCATT 358
Query 704 GTCATAGAATGGTGTGTGTGGAGTGTGGGACTCAGTGGCATCCGGAGATGACTTGCGAGG 763
| ||||||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||
Sbjct 359 GCCATAGAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCAGAGATAACTTGCGAGG 418
Query 764 AGTTTCAGAAGCTAGCGGCGAACGAGAGAGGAAGAGATGATATTTTGCTTGCGACGATGG 823
|||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||
Sbjct 419 AGTTTCAGAAGCTAGCGGAGAACGAAAGAGGAAGAGATGATATTTTGCTCGCGACGATGG 478
Query 824 CAAAGCAAAAGAAATGGAAAAGATGTCCTTCTTG 857
||||| ||||||||||||||||||||||||||||
Sbjct 479 CAAAGAAAAAGAAATGGAAAAGATGTCCTTCTTG 512
> Ahg887317 jgi|Araly1|887317|Al_scaffold_1046_1
Length=483
Score = 499 bits (270), Expect = 2e-140
Identities = 355/395 (90%), Gaps = 10/395 (3%)
Strand=Plus/Plus
Query 514 TCTGGTCGGCTCGAGCCAGATCAGTGTCGTCAGATTTTGCCTAA-AGAGGTTTTTGATCG 572
||||||||||| ||||||||| |||||||||| || ||||| || ||||||||||||||
Sbjct 25 TCTGGTCGGCTAGAGCCAGATAAGTGTCGTCAAATCTTGCC-AAGAGAGGTTTTTGATCA 83
Query 573 GTGGGGTGATGCT-TTGTGTGAAGCAGTAGTGATGCGTTCGAAGAAATTCTACTGTCCTT 631
||||| ||||||| || | |||||||||| |||||||||| |||| ||| || |||||||
Sbjct 84 GTGGGATGATGCTCTT-TCTGAAGCAGTATTGATGCGTTCAAAGAGATTATATTGTCCTT 142
Query 632 ACAAGGATTGCTCTGCTTTGGTTTTC-TTAGA-AGAGAGTGAAGTAAAGATGAAAGATTC 689
| |||||||||||||||||| ||||| || || | |||||||||| ||||||||||||||
Sbjct 143 ATAAGGATTGCTCTGCTTTGCTTTTCATT-GACA-AGAGTGAAGTGAAGATGAAAGATTC 200
Query 690 GGAGTGTCCTCATTGTCATAGAATGGTGTGTGTGGAGTGTGGGACTCAGTGGCATCCGGA 749
||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 201 GGAGTGTCCTCATTGCCATAGAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCGGA 260
Query 750 GATGACTTGCGAGGAGTTTCAGAAGCTAGC-GGCGAACGAGAGAGGAAGAGATGATATTT 808
||| |||||||||||||||||||||||||| || |||||| |||||||||||| ||||||
Sbjct 261 GATAACTTGCGAGGAGTTTCAGAAGCTAGCAGG-GAACGAAAGAGGAAGAGATAATATTT 319
Query 809 TGCTTGCGACGATGGCAAAGCAAAAGAAATGGAAAAGATGTCCTTCTTGCAAATTCTATA 868
|||| ||||||||||||||| ||||||| |||||||||||| |||||||||| ||||||
Sbjct 320 TGCTCGCGACGATGGCAAAGAAAAAGAACTGGAAAAGATGTTATTCTTGCAAACTCTATA 379
Query 869 TTGAGAAATCTCAGGGTTGCTTATACATGAAGTGC 903
||||||| ||||| ||||||||||||||||| |||
Sbjct 380 TTGAGAAGTCTCAAGGTTGCTTATACATGAAATGC 414
> Ahg924918 jgi|Araly1|924918|scaffold_200479.1
Length=521
Score = 492 bits (266), Expect = 3e-138
Identities = 358/401 (89%), Gaps = 12/401 (3%)
Strand=Plus/Plus
Query 466 AAATTACAAGACAACATTCTCTCAATCGAATGTCCTGTCTCTGGTT------GTTCTGGT 519
||||||||||||||||| ||||||||||| |||| ||||||||||| | ||||||
Sbjct 101 AAATTACAAGACAACATCCTCTCAATCGAGTGTCTTGTCTCTGGTTGCGAGAGCTCTGGT 160
Query 520 CGGCTCGAGCCAGATCAGTGTCGTCAGAT-TTTGCCTAAAGAGGTTTTTGATCGGTGGGG 578
||||||||||| ||| |||||||||| || || ||| | |||||||||||||| | ||||
Sbjct 161 CGGCTCGAGCCTGATAAGTGTCGTCAAATCTTGGCC-AGAGAGGTTTTTGATCAGCGGGG 219
Query 579 TGATGCT-TTGTGTGAAGCAGTAGTGATGCGTTCGAAGAAATTCTACTGTCCTTACAAGG 637
||||||| || | |||||||||| |||| ||||| |||| ||| ||||||||||| ||||
Sbjct 220 TGATGCTCTT-TCTGAAGCAGTATTGATTCGTTCAAAGAGATTTTACTGTCCTTATAAGG 278
Query 638 ATTGCTCTGCTTTGGTTTTC-TTAGAAGAGAGTGAAGTAAAGATGAAAGATTCGGAGTGT 696
|||||||||||||| ||||| || || ||||||||||| |||||||||||||||||||||
Sbjct 279 ATTGCTCTGCTTTGCTTTTCATT-GACGAGAGTGAAGTGAAGATGAAAGATTCGGAGTGT 337
Query 697 CCTCATTGTCATAGAATGGTGTGTGTGGAGTGTGGGACTCAGTGGCATCCGGAGATGACT 756
|||||||| |||| |||||||||||| |||||||||||| |||||||||| ||||| |||
Sbjct 338 CCTCATTGCCATATAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCAGAGATAACT 397
Query 757 TGCGAGGAGTTTCAGAAGCTAGCGGCGAACGAGAGAGGAAGAGATGATATTTTGCTTGCG 816
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||
Sbjct 398 TGCGAGGAGTTTCAGAAGCTAGCGGAGAACGAAAGAGGAAGAGATGATATTTTGCTCGCG 457
Query 817 ACGATGGCAAAGCAAAAGAAATGGAAAAGATGTCCTTCTTG 857
|||||||||||| ||||||||||||||||||||||||||||
Sbjct 458 ACGATGGCAAAGAAAAAGAAATGGAAAAGATGTCCTTCTTG 498
> Ahg908029 jgi|Araly1|908029|Al_scaffold_0002_1110
Length=180
Score = 276 bits (149), Expect = 3e-73
Identities = 169/179 (94%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 679 ATGAAAGATTCGGAGTGTCCTCATTGTCATAGAATGGTGTGTGTGGAGTGTGGGACTCAG 738
|||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| ||
Sbjct 1 ATGAAAGATTCGGAGTGTCCTCATTGCCATATAATGGTGTGTGTAGAGTGTGGGACTAAG 60
Query 739 TGGCATCCGGAGATGACTTGCGAGGAGTTTCAGAAGCTAGCGGCGAACGAGAGAGGAAGA 798
|||||||| ||||| |||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 61 TGGCATCCAGAGATAACTTGCGAGGAGTTTCAGAAGCTAGCGGAGAACGAAAGAGGAAGA 120
Query 799 GATGATATTTTGCTTGCGACGATGGCAAAGCAAAAGAAATGGAAAAGATGTCCTTCTTG 857
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 GATGATATTTTGCTCGCGACGATGGCAAAGAAAAAGAAATGGAAAAGATGTCCTTCTTG 179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44527567056
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5