BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53710.1
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485760 jgi|Araly1|485760|fgenesh2_kg.5__1752__AT3G53710.1 2780 0.0
> Ahg485760 jgi|Araly1|485760|fgenesh2_kg.5__1752__AT3G53710.1
Length=1778
Score = 2780 bits (1505), Expect = 0.0
Identities = 1696/1787 (95%), Gaps = 18/1787 (1%)
Strand=Plus/Plus
Query 1 CACAAGTCTGCGAGATTTGGATTAGATCTGATTCAGGTTGGATTGA-TCATCGTTCGGAG 59
|||||||||||||||||||||| ||||||| ||||||||||||||| | | | || |||
Sbjct 1 CACAAGTCTGCGAGATTTGGATCAGATCTGCTTCAGGTTGGATTGATTGGT-GATCAGAG 59
Query 60 CTCCGGGAAACATGGCGGCGACGAGACAATTACGAACTCTCCAATCTCAGCCTGAAAACA 119
|||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||
Sbjct 60 CTCCGGGAAACATGGCGGCGGCGAGACAATTACGCACTCTCCAATCTCAACCTGAAAACA 119
Query 120 AGGTATGTGTCGATTGCGCTCAGAAGAATCCTCAATGGGCGTCGGTTTCGTACGGAATCT 179
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 AGGTATGTGTCGACTGCGCTCAGAAGAATCCTCAATGGGCGTCGGTTTCTTACGGAATCT 179
Query 180 TCATGTGTTTGGAATGCTCCGGGAAACACCGAGGCTTAGGCGTTCACATATCCTTCGTCA 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 TCATGTGTTTGGAATGCTCCGGGAAACACCGAGGCTTAGGCGTTCACATCTCCTTCGTCA 239
Query 240 GATCCGTAACCATGGATTCATGGTCTGCGATCCAGATTAAGAAAATGGAAGCTGGTGGTA 299
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || |
Sbjct 240 GATCCGTAACCATGGATTCATGGTCTGAGATCCAGATCAAGAAAATGGAAGCTGGAGGCA 299
Query 300 ACGAACGGCTCAACAAATTCTTCGCGCAATACGGAATCGCTAAGGAGACAGATATTATCT 359
||||||| |||||||||||||||||||||||||||||| |||| ||||| ||||| || |
Sbjct 300 ACGAACGACTCAACAAATTCTTCGCGCAATACGGAATCTCTAAAGAGACTGATATCATTT 359
Query 360 CCAAGTACAATTCGAACGCTGCTTCTGTGTATCGTGACCGGATCCAAGCTTTAGCTGAAG 419
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CAAAGTACAATTCGAATGCTGCTTCTGTGTATCGTGACCGGATCCAAGCTTTAGCTGAAG 419
Query 420 GTAGACCATGGAATGATCCGCCAGTTGTTAAGGAAGCGAATAAGAAGCCTCCGTTGGCTC 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTAGGCCATGGAATGATCCGCCAGTTGTTAAGGAAGCGAATAAGAAGCCTCCGTTGGCTC 479
Query 480 AGGGCGGTTACGGAAACAACAATAACAATAACAATGGAGGATGGGATAGTTGGGATAACG 539
|||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 480 AGGGCGGTTATGGAAACAACAACAACAACAACAATGGAGGATGGGATAGTTGGGATAACG 539
Query 540 ATGATTCTTACAAA---T---CTGATATGAGAAGGAATCAGTCAGCGAATGATTTCAGGG 593
|||||||||||||| | ||||||||||| ||||||| |||||||||||||| ||||
Sbjct 540 ATGATTCTTACAAATCTTCAACTGATATGAGACGGAATCAATCAGCGAATGATTTTAGGG 599
Query 594 CATCGGGAAATAGAGAAGGTGCACATGTGAAGTCAAAGTCGTCGGAGGATATCTACACGC 653
||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 CATCGGGAACTAGAGGAGGTGCACATGTGAAGTCAAAGTCGTCGTCGGATATCTACACGC 659
Query 654 GAT-CGCAGCTTGAGGCTTCTGCCGCTGGGAAAGAGAGTTTCTTCGCGAGGAGAATGGCG 712
||| || |||| ||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 660 GATCCG-AGCTGGAGGCTTCTGCTGCGGGGAAAGAGAGCTTCTTCGCGAGGAGAATGGCG 718
Query 713 GAGAATGAGTCTAAGCCTGAAGGTCTTCCTCCTTCGCAAGGTGGCAAGTATGTAGGATTC 772
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 719 GAGAATGAGTCTAAGCCTGAAGGTCTTCCTCCTTCGCAAGGCGGTAAGTATGTAGGATTC 778
Query 773 GGATCAAGCTCGGCTCCACCACCGAGAAATAATCAACAGGATGATGTTTTCTCCGTTGTT 832
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GGATCAAGCTCCGCTCCACCACCGAGAAATAATCAACAGGATGATGTTTTCTCCGTTGTT 838
Query 833 TCTCAGGGTTTTGGAAGACTGTCTCTGGTTGCTGCATCTGCAGCTCAGTCAGCTGCTAGT 892
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 839 TCTCAGGGTTTTGGAAGACTGTCTCTGGTTGCTGCATCTGCAGCTCAGTCAGCTGCAAGT 898
Query 893 GTTGTTCAAACAGGAACCAAGGAGTTCACATCCAAGGTGAAGGAAGGTGGGTATGATCAC 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GTTGTTCAAACAGGAACCAAGGAGTTCACATCCAAGGTGAAGGAAGGTGGGTATGATCAC 958
Query 953 AAGGTGAGTGAAACTGTAAATGTAGTTGCTAATAAGACAACAGAGATAGGACATAGGACA 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAGGTGAGTGAAACTGTAAATGTAGTTGCTAATAAGACAACAGAGATAGGACATAGGACA 1018
Query 1013 TGGGGAATCATGAAAGGAGTAATGGCAATGGCGACACAGAAGGTAGAAGAGTTTACTAAA 1072
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1019 TGGGGGATCATGAAAGGAGTAATGGCAATGGCGACACAGAAGGTAGAAGAGTTCACTAAA 1078
Query 1073 GAAGGATCAACAAGCTGGAATCAGCAGAGTGAAAATGAGGGCAATGGTTACTACCAGAAC 1132
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1079 GAAGGAACAACAAGCTGGAATCAGCAGAGTGAAAGTGAGGGCAATGGTTACTACCAGAAC 1138
Query 1133 TTTGGAAATGGGAACAAAGCAGCGAATTCATCTGTTGGAGGAGGAAGGCCACAATCATCA 1192
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1139 TTTGGAAACGGGAACAAAGCAGCGAATTCATCTGTTGGAGGAGGAAGGTCACAATCATCA 1198
Query 1193 TCGACAAGTGGTCATTACAACAACTCGCAGAATTCAAATTCTTGGGATAGTTGGGGAGAG 1252
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1199 ---ACAAGTGGTCATTACAACAATTCGCAGAATTCAAATTCTTGGGATAGCTGGGGAGAG 1255
Query 1253 AATGAGAATAAGAAGACAGAAGCAGTAGCTCCAAAGGGGTCATCTGCTTCTAatgatgat 1312
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1256 AATGAGAATAAGAAGACAGAAGCAGCAGCTCCAAAGGGGTCATCTGCTTCTAATGATGAT 1315
Query 1313 gatggttggactggttgggatgatcatgatgccaaagatgatgggttcgatggtCATTAC 1372
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1316 GATGGCTGGACTGGTTGGGATGATCATGATGCCAAAGATGATGGGTTCGATGGCCATTAC 1375
Query 1373 CAAAGTGCAGGCGATAAGAAATCTGCTGGTCACAACGGGAAATCAGACACCGCTTGGACT 1432
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1376 CAAAGTGCAGGCGATAAGAAATCTGTTGGTCACAACGAGAAATCAGACACCGCTTGGACC 1435
Query 1433 GGTGGAGGTTTTCTCTAAGGGTGATTCAGAATGCCGGTGAGAAGTGTATAATTAATTAAG 1492
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 1436 GGTGGAGGTTTTCTCTAAGGGTGTTTCAGAATCCCCGTGAGAAGTGTATAATTAATTAAG 1495
Query 1493 GCTGGGACCATCGTGGTCTGAATAGAAGATAAGAATGGTCTTCATCTTAAAACCATGTTC 1552
|| |||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1496 GCCGGGACCGTCGTGGTCTGAATAGAAGATGAGATTGGTCTTCATCTTAAAACCATGTTC 1555
Query 1553 ATCCATACCCACAGGTCTGCGTTTTTCTTCATAAGTTGGCGGTTTCTTGATA-TCTTTTC 1611
|||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||
Sbjct 1556 ATCCATACCCACAGGTCTGCGTTTTTCTTCATAAGTTGGCAGTTTCTTGATAATTTTTTC 1615
Query 1612 TTCATGTGTTAAGGAGTAACGTATTTGTACAAGATCCATAGCCGATTGTTTGCTAAAGAT 1671
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TTCATGTGTTAAGGAGTAACATATTTGTACAAGATCCATAGCCGATTGTTTGCTAAAGAT 1675
Query 1672 TTTCGGTTTTAGTCTTTCACAATTTAAATTTATCTTCAACTGTAACCACAACTGAACATT 1731
||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||
Sbjct 1676 TTTCGGTTTTAGTCTTTCACAGTTTGAATTTATCTTCAACTGTAATCACAACTGAACATT 1735
Query 1732 CTTTTTCTCAAAATTGCCTTGTTCCGTTGTTCGTAGCGTGATAATGT 1778
|||||||||||||||| ||| | ||||| |||||||||||||||
Sbjct 1736 CTTTTTCTCAAAATTGGCTTA--C--TTGTTGGTAGCGTGATAATGT 1778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67229282425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5