BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53720.1
Length=2762
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938281 jgi|Araly1|938281|scaffold_502472.1 4080 0.0
> Ahg938281 jgi|Araly1|938281|scaffold_502472.1
Length=2572
Score = 4080 bits (2209), Expect = 0.0
Identities = 2457/2578 (95%), Gaps = 11/2578 (0%)
Strand=Plus/Plus
Query 65 GAGTCCTTTGAAATCCCCAAAATGCCCTTCAACATAACCTCCGTGAAAACCTCATCTAAC 124
|||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1 GAGTCC-TTGAAATCCCCAAAATGCCCTTCAACATAACCTCTGTGAAAACCTCGTCTAAC 59
Query 125 GGAGTATGGCAAGGCGACAATCCTTTAAACTTCGCTTTTCCGTTACTCATCGTCCAAACG 184
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 GGAGTATGGCAAGGCGACAATCCCTTAAACTTCGCTTTTCCGTTACTCATCGTCCAAACA 119
Query 185 GCGTTAATCATCGCCGTCAGTCGCTTCCTCGCCGTCTTATTCAAACCTCTCCGTCAACCC 244
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 GCGTTAATCATCGCCGTCAGTCGCTCCCTCGCCGTCTTATTCAAACCTCTCCGTCAACCT 179
Query 245 AAAGTCATCGCCGAGATTGTCGGAGGGATTTTGTTAGGACCATCGGCTTTAGGTAGAAAC 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAAGTCATCGCCGAGATTGTCGGAGGGATTTTGTTAGGACCATCGGCTTTAGGTAGAAAC 239
Query 305 ATGGCGTACATGGACCGTATATTTCCGAAATGGAGTATGCCGATACTCGAATCCGTCGCG 364
| |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 240 ACGGCGTATATGGACCGTATATTCCCGAAATGGAGTATGCCGATACTTGAATCCGTCGCG 299
Query 365 AGCATAGGACTTCTCTTCTTCCTCTTCCTCGTCGGTCTAGAACTCGATTTATCATCGATC 424
|||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 300 AGCATAGGACTTCTATTCTTCCTCTTCCTCGTCGGTCTCGAGCTCGATTTATCATCGATC 359
Query 425 CGACGAAGCGGCAAACGCGCTTTCGGAATCGCAGTCGCTGGAATTACACTACCGTTTATC 484
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 360 CGACGAAGCGGCAAACGCGCTTTTGGAATCGCAGTCGCCGGAATCACACTACCGTTTATC 419
Query 485 GCCGGCGTCGGAGTCGCGTTTGTGATCCGTAACACTCTCTACACCGCCGCGGATAAACCA 544
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| ||||
Sbjct 420 GCCGGCGTTGGAGTCGCGTTCGTGATCCGCAACACTCTCTACACCGCCGCGGATAGACCA 479
Query 545 GG-TTACGCCGAGTTTCTCGTTTTCATGGGAGTCGCACTCTCGATCACAGCTTTTCCGGT 603
|| || |||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 GGATT-CGCCGAATTTCTCGTTTTCATGGGAGTCGCACTCTCGATCACAGCTTTTCCCGT 538
Query 604 ACTTGCGCGTATTTTAGCAGAGCTCAAGCTTTTAACGACTCAGATAGGAGAAACCGCGAT 663
||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 539 ACTCGCGCGTATTTTAGCAGAGCTCAAGCTTTTAACGACTCGGATCGGAGAAACCGCGAT 598
Query 664 GGCTGCAGCCGCTTTTAACGATGTAGCCGCGTGGATTTTACTCGCTTTAGCGGTTGCGTT 723
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 599 GGCTGCAGCCGCTTTCAACGATGTAGCCGCGTGGATTTTGCTCGCTTTAGCGGTTGCGTT 658
Query 724 AGCGGGTAATGGCGGTGAGGGAGGTGGAGAGAAAAAGAGTCCGTTAGTGTCGTTGTGGGT 783
||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGCGGGTGATGGCGGTGGGGGCGGTGGAGAGAAAAAGAGTCCGTTAGTGTCGTTGTGGGT 718
Query 784 TTTGTTATCGGGCGCTGGGTTTGTGGTTTTTATGTTGGTTGTGATCCGACCCGGAATGAA 843
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTTATTATCGGGTGCTGGGTTTGTGGTTTTTATGTTGGTTGTGATCCGACCCGGAATGAA 778
Query 844 ATGGGTCGCGAAACGTGGATCTCCTGAAAACGACGTCGTACGCGAGTCTTACGTGTGTTT 903
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 779 ATGGGTCGCGAAACGTGGATCTCCTGAAAACGACGTCGTACGTGAGTCTTACGTGTGTTT 838
Query 904 GACGTTAGCCGGTGTTATGGTTTCCGGTTTCGCGACGGATTTAATTGGGATTCATTCGAT 963
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GACGTTAGCCGGAGTTATGGTTTCCGGTTTCGCGACGGATTTAATTGGGATTCATTCGAT 898
Query 964 TTTTGGAGCGTTTGTTTTCGGTTTGACTATACCGAAAGATGGAGAGTTTGGTCAGCGATT 1023
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||
Sbjct 899 TTTTGGAGCGTTTGTTTTCGGTTTAACTATACCGAAAGATGGAGAGTTCGGTCAGAGGTT 958
Query 1024 GATTGAACGAATTGAGGATTTTGTTTCCGGTTTACTCTTACCGCTTTATTTCGCTACGAG 1083
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 959 AATTGAACGGATTGAGGATTTTGTCTCCGGTTTACTCTTACCGCTTTATTTCGCGACGAG 1018
Query 1084 TGGTTTGAAGACTGACGTGGCTAAGATTAGAGGAGCTGAGTCGTGGGGGATGTTGGGTCT 1143
||| || || ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1019 TGGGTTAAAAACTGACGTGGCAAAGATCAGAGGAGCTGAGTCGTGGGGGATGTTGGGTCT 1078
Query 1144 TGTTGTTGTTACGGCTTGTGCCGGGAAGATAGTCGGAACTTTTGTTGTGGCGGTGATGGT 1203
|||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TGTTGTGGTAACGGCTTGCGCCGGGAAGATAGTCGGAACTTTTGTTGTGGCGGTGATGGT 1138
Query 1204 TAAAGTTCCGGCGAGAGAGGCGTTGACACTTGGTTTCTTGATGAATACTAAAGGTTTAGT 1263
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TAAAGTTCCGGCGAGAGAGGCTTTGACACTTGGTTTCTTGATGAATACTAAAGGTTTAGT 1198
Query 1264 GGAGCTCATTGTACTCAACATAGGCAAGGAGAAAAAGGTACTAAACGACGAGACGTTTGC 1323
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1199 GGAGCTCATTGTACTCAACATAGGCAGGGAGAAAAAGGTACTAAACGACGAGACGTTTGC 1258
Query 1324 AATACTAGTGCTAATGGCACTCTTCACAACGTTCATAACGACGCCTACTGTAATGGCCAT 1383
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1259 AATATTAGTGCTAATGGCACTCTTCACAACGTTCATAACGACGCCGACTGTAATGGCCAT 1318
Query 1384 TTACAAGCCGGCACGTGGCACCCACCGCAAACTAAAAGACTTGTCGGCGAGCCAAGACTC 1443
||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| |||
Sbjct 1319 TTACAAGCCGGCACGTGGCACCCACCGCAAATTAAAAGACTTGTCCGCGAGCGAAGGCTC 1378
Query 1444 CACCAAGGAAGAGCTTCGCATCCTAGCCTGCCTCCACGGCCCAGCCAATGTCTCCTCCCT 1503
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1379 CACCAAAGAAGAGCTTCGCATCCTAGCCTGCCTCCACGGCCCAGCCAATGTCTCCTCTCT 1438
Query 1504 CATCTCTCTCGTCGAGTCCATCCGAACCACCAAGATACTACGGCTAAAGCTGTTTGTGAT 1563
|||||||||| |||||||||||||||||||||||||||| | |||||||||||| |||||
Sbjct 1439 CATCTCTCTCATCGAGTCCATCCGAACCACCAAGATACTGCAGCTAAAGCTGTTCGTGAT 1498
Query 1564 GCATCTGATGGAACTAACGGAACGGTCTTCGTCAATCATAATGGTGCAAAGAGCCCGTAA 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GCATCTGATGGAACTAACGGAACGGTCTTCGTCAATCATAATGGTGCAAAGAGCCCGTAA 1558
Query 1624 AAACGGACTTCCTTTCGTTCACCGTTACCGTCATGGTGAGCGTCACAGCAACGTCATAGG 1683
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1559 AAACGGACTTCCTTTCGTTCACCGTTACCGTCATGGTGAGCGTCACAGCAGCGTCATAGG 1618
Query 1684 AGGCTTCGAAGCCTATCGTCAACTAGGCCGGGTCGCAGTCCGGCCCATCACCGCAGTCTC 1743
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1619 AGGCTTCGAAGCCTATCGTCAACTAGGCCGGGTCGCAGTCCGGCCCATAACCGCAGTCTC 1678
Query 1744 TCCATTACCCACAATGCACGAAGACATTTGCCACATGGCAGATACCAAGAGGGTCACAAT 1803
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1679 TCCATTACCCACAATGCACGAAGACATTTGCCACATGGCAGAGACCAAGAGGGTCACAAT 1738
Query 1804 GATCATTTTACCTTTCCACAAACGATGGAACGCTGATCATGGTCATAGCCACCACCACCA 1863
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||| || ||
Sbjct 1739 GATCATTTTACCTTTCCACAAACGATGGAACGTTGATCATGGTCATGGCCACCATCATCA 1798
Query 1864 AGACGGAGGAGGAGATGGAAACGTACCGGAAAACGTTGGTCATGGTTGGCGATTGGTTAA 1923
||| || |||| | |||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1799 AGATGGTGGAG-AC--GGAAACTTACCAGAAAACGTTGGTCATGGTTGGCGATTGGTTAA 1855
Query 1924 CCAAAGGGTTTTGAAGAATGCGCCGTGTTCGGTGGCGGTTCTTGTAGACCGTGGACTTGG 1983
||| |||||| ||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1856 CCAGAGGGTTCTGAAGAACGCGCCGTGTTCTGTGGCGGTTCTTGTGGACCGTGGACTTGG 1915
Query 1984 GTCCATTGAGGCCCAAACTTTGAGCTTAGATGGGTCGAATGTGGTTGAAAGGGTTTGTGT 2043
|||||||||||||||||||| |||| | |||||||| |||||||||||||||||||||||
Sbjct 1916 GTCCATTGAGGCCCAAACTTCGAGCCTCGATGGGTCAAATGTGGTTGAAAGGGTTTGTGT 1975
Query 2044 GATTTTCTTTGGTGGGCCTGATGACCGTGAGTCTATAGAGCTCGGCGGGAGAATGGCTGA 2103
|||||||||||||||||||||||| |||||| || |||||||||||||||| ||||| ||
Sbjct 1976 GATTTTCTTTGGTGGGCCTGATGATCGTGAGGCTTTAGAGCTCGGCGGGAGGATGGCGGA 2035
Query 2104 GCATCCGGCCGTTAAAGTTACCGTTATTAGGTTTTTGGTAAGAGAAACGTTGAGGAGTAC 2163
||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 2036 GCATCCGGCCGTTAAAGTTACCGTTATTAGGTTCTTGGTGAGAGAAAGGTTGAGGAGTAA 2095
Query 2164 CGCCGTCACTTTACGACCGGCACCGTCTAAAGGCAAGGAGAAGAACTATGCCTTTTTAAC 2223
|| ||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2096 CGTCGTTACCTTACGACCGGCACCGTCTAAAGGCAAGGAGAAGAACTATGCCTTTTTGAC 2155
Query 2224 AACCAACGTGGATCCAGAAAAAGAAAAGGAATTAGACGAAGGGGCATTGGAAGACTTCAA 2283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 AACCAACGTGGATCCAGAAAAAGAAAAGGAATTAGACGAAGGGGCATTGGAAGACTTCAA 2215
Query 2284 GAGCAAATGGAAAGAAATGGTGGAGTACAAAGAAAAGGAACCAAACAACATCATTGAAGA 2343
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2216 GGGCAAATGGAAAGAAATGGTGGAGTACAAAGAAAAGGAACCAAACAACATCATTGAAGA 2275
Query 2344 AATACTGTCAATAGGACAGAGTAAAGACTTTGATCTAATAGTGGTTGGAAGAGGGAGGAT 2403
||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2276 GATACTGTCAATAGGACAAAGTAAAGACTTTGATCTAATTGTGGTTGGAAGGGGGAGGAT 2335
Query 2404 ACCGTCGGCCGAGGTGGCGGCATTAGCTGAGCGTCA-AGCTGAACATCCTGAGTTAGGTC 2462
||||||||| ||||| |||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 2336 ACCGTCGGCTGAGGTTGCGGCATTAGCTGAGCGTCAGA-CTGAACATCCCGAGTTAGGTC 2394
Query 2463 CTATCGGAGACGTGCTCGCCTCTTCGATCAACCACATCATTCCATCAATCCTTGTGGTTC 2522
|||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2395 CTATAGGGGACGTGCTCGCCTCTTCGATCAACCACATCATCCCATCAATCCTTGTGGTTC 2454
Query 2523 AACAACACAACAAAGCTCATGTAGAGGATATTACGGTTTCCAAAATTGTTAGTGAGTCTT 2582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2455 AACAACACAACAAAGCTCATGTAGAGGATATTACGGTTTCCAAAATTGTTAGTGAGTCTT 2514
Query 2583 CTCTAAGTATTA--A-CGGAGACACAAATGTATGATAACAATAAATAAATTGATCTAG 2637
|||||||||||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 2515 CTCTAAGTATTATTAACGGAGACACAAATGTATGATAACAATAAATAAATTGATGTAG 2572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104214910320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5