BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53730.1
Length=540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485763 jgi|Araly1|485763|fgenesh2_kg.5__1755__AT3G53730.1 544 3e-154
Ahg496101 jgi|Araly1|496101|fgenesh2_kg.8__1917__AT5G59690.1 291 5e-78
Ahg497532 jgi|Araly1|497532|fgenesh2_kg.781__1__AT5G59970.1 281 3e-75
Ahg496134 jgi|Araly1|496134|fgenesh2_kg.8__1950__AT5G59970.1 281 3e-75
> Ahg485763 jgi|Araly1|485763|fgenesh2_kg.5__1755__AT3G53730.1
Length=401
Score = 544 bits (294), Expect = 3e-154
Identities = 330/347 (95%), Gaps = 4/347 (1%)
Strand=Plus/Plus
Query 61 AAAATGTCAGGCCGAGGAAAGGGAGGAAAAGGATTAGGAAAGGGAGGAGCCAAGAGACAT 120
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1 AAAATGTCAGGCCGAGGAAAAGGAGGAAAAGGATTGGGAAAGGGAGGAGCCAAGAGACAT 60
Query 121 CGGAAAGTACTCAGAGACAACATCCAAGGGATTACCAAACCTGCGATTCGTCG-TCTCGC 179
|||||||| ||| |||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 61 CGGAAAGTTCTCCGAGACAACATCCAAGGGATTACCAAACCTGCGATTCGTCGAT-TGGC 119
Query 180 GAGAAGAGGAGGCGTGAAGCGTATCAGTGGTTTGATCTATGAAGAGACTCGCGGCGTTCT 239
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 TAGAAGAGGAGGCGTGAAACGTATCAGTGGTTTGATCTATGAAGAGACTCGGGGCGTTCT 179
Query 240 CAAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAGCACGCTCGCCG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CAAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAGCACGCTCGCCG 239
Query 300 GAAAACTGTTACGGCGATGGACGTCGTTTACGCTCTCAAGAGACAAGGACGAACTTTGTA 359
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 240 GAAAACAGTTACGGCGATGGACGTCGTTTACGCTCTTAAGAGACAAGGACGGACTTTGTA 299
Query 360 TGGATTCGGCGGCTAAATCGTTC-GGATTGCAATTTCGGATTTTGTA 405
|||||||||||||||||||||| || || |||||||||||||||||
Sbjct 300 TGGATTCGGCGGCTAAATCGTTATGGTTT-CAATTTCGGATTTTGTA 345
> Ahg496101 jgi|Araly1|496101|fgenesh2_kg.8__1917__AT5G59690.1
Length=428
Score = 291 bits (157), Expect = 5e-78
Identities = 270/324 (83%), Gaps = 9/324 (3%)
Strand=Plus/Plus
Query 60 AAAAATGTCAGGCCGAGGAAAGGGAGGAAAAGGATTAGG-AAAGGGAGGAGCCAAGAGAC 118
||||||||| ||||| ||||||||||||||||| || || ||| |||||||||||| | |
Sbjct 61 AAAAATGTCGGGCCGTGGAAAGGGAGGAAAAGGTTTGGGTAAA-GGAGGAGCCAAGCGTC 119
Query 119 ATC-GGAAAGTACTCAGAGACAACATCCAAGGGATTACCAAACCTGCGATTCGTCG-TCT 176
| | |||| || || ||||||||||||||||| || ||||| || |||||||| | | |
Sbjct 120 A-CAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGAAGAT-T 177
Query 177 CGCGAGAAGAGGAGGCGTGAAGCGTATCAGTGGTTTGATCTATGAAGAGACTCGCGGCGT 236
|| | ||||| || || |||||||| |||||| ||||||| || |||||||| |||||
Sbjct 178 GGCTCGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTGATCTACGAGGAGACTCGTGGCGT 237
Query 237 TCTCAAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAGCACGCTCG 296
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| |
Sbjct 238 CCTCAAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTTACTTACACCGAGCACGCTAG 297
Query 297 CCGGAAAACTGTTACGGCGATGGACGTCGTTTACGCTCTCAAGAGACAAGGACGAACT-T 355
|||| ||||| || || ||||| || ||||||||||||||||| |||||| | ||| |
Sbjct 298 GAGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGACTCT 357
Query 356 TGTATGGATTCGGCGGCTAAATCG 379
| || ||||||||||| ||| |||
Sbjct 358 T-TACGGATTCGGCGGTTAA-TCG 379
> Ahg497532 jgi|Araly1|497532|fgenesh2_kg.781__1__AT5G59970.1
Length=491
Score = 281 bits (152), Expect = 3e-75
Identities = 265/319 (83%), Gaps = 9/319 (3%)
Strand=Plus/Plus
Query 57 GAGAAAAATGTCAGGCCGAGGAAAGGGAGGAAAAGGATTAGG-AAAGGGAGGAGCCAAGA 115
||| |||||||| || || ||||||||||||||||| || || ||| |||||||| |||
Sbjct 21 GAG-AAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGCAAA-GGAGGAGCGAAGC 78
Query 116 GACATC-GGAAAGTACTCAGAGACAACATCCAAGGGATTACCAAACCTGCGATTCGTCGT 174
| || | |||| || || ||||||||||||||||| || ||||| || |||||||| |
Sbjct 79 GTCA-CAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGA 137
Query 175 CTCGCGAGAAGAGGAGGCGTGAAGCGTATCAGTGGTTTGATCTATGAAGAGACTCGCGGC 234
|| || | ||||| || || ||||||||||||||| ||||||| || |||||||| |||
Sbjct 138 CTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGATCTACGAGGAGACTCGTGGC 197
Query 235 GTTCTCAAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAGCACGCT 294
|| || |||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 198 GTCCTGAAGATCTTTCTCGAGAACGTGATTCGTGACGCTGTTACTTACACCGAGCACGC- 256
Query 295 C-GCCGGAAAACTGTTACGGCGATGGACGTCGTTTACGCTCTCAAGAGACAAGGACGAAC 353
| | |||| ||||| || || ||||| || ||||||||||||||||| |||||| | ||
Sbjct 257 CAGGAGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGAC 316
Query 354 T-TTGTATGGATTCGGCGG 371
| || || |||||||||||
Sbjct 317 TCTT-TACGGATTCGGCGG 334
> Ahg496134 jgi|Araly1|496134|fgenesh2_kg.8__1950__AT5G59970.1
Length=491
Score = 281 bits (152), Expect = 3e-75
Identities = 265/319 (83%), Gaps = 9/319 (3%)
Strand=Plus/Plus
Query 57 GAGAAAAATGTCAGGCCGAGGAAAGGGAGGAAAAGGATTAGG-AAAGGGAGGAGCCAAGA 115
||| |||||||| || || ||||||||||||||||| || || ||| |||||||| |||
Sbjct 21 GAG-AAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGCAAA-GGAGGAGCGAAGC 78
Query 116 GACATC-GGAAAGTACTCAGAGACAACATCCAAGGGATTACCAAACCTGCGATTCGTCGT 174
| || | |||| || || ||||||||||||||||| || ||||| || |||||||| |
Sbjct 79 GTCA-CAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGA 137
Query 175 CTCGCGAGAAGAGGAGGCGTGAAGCGTATCAGTGGTTTGATCTATGAAGAGACTCGCGGC 234
|| || | ||||| || || ||||||||||||||| ||||||| || |||||||| |||
Sbjct 138 CTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGATCTACGAGGAGACTCGTGGC 197
Query 235 GTTCTCAAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAGCACGCT 294
|| || |||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 198 GTCCTGAAGATCTTTCTCGAGAACGTGATTCGTGACGCTGTTACTTACACCGAGCACGC- 256
Query 295 C-GCCGGAAAACTGTTACGGCGATGGACGTCGTTTACGCTCTCAAGAGACAAGGACGAAC 353
| | |||| ||||| || || ||||| || ||||||||||||||||| |||||| | ||
Sbjct 257 CAGGAGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGAC 316
Query 354 T-TTGTATGGATTCGGCGG 371
| || || |||||||||||
Sbjct 317 TCTT-TACGGATTCGGCGG 334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19688283924
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5