BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53740.2
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485766 jgi|Araly1|485766|fgenesh2_kg.5__1758__AT3G53740.2 874 0.0
Ahg345495 jgi|Araly1|345495|fgenesh1_pg.C_scaffold_4001837 385 2e-106
Ahg321464 jgi|Araly1|321464|fgenesh1_pm.C_scaffold_4001521 363 1e-99
> Ahg485766 jgi|Araly1|485766|fgenesh2_kg.5__1758__AT3G53740.2
Length=615
Score = 874 bits (473), Expect = 0.0
Identities = 573/621 (92%), Gaps = 8/621 (1%)
Strand=Plus/Plus
Query 1 ACAAAAATGTAATTTTCAGTCGGCGTCCT-TCTTTTGTCTGAACCACCGGAGGAGCTCGA 59
||||||||| |||||||||||| ||| || |||| ||||||||||||||||||||||||
Sbjct 1 ACAAAAATGCAATTTTCAGTCGTCGT-CTATCTTCCGTCTGAACCACCGGAGGAGCTCGA 59
Query 60 TCCATTGATTAGAAGATGACAACTCCACAAGTGAAGACCGGTTTGTTCGTTGGGTTGAAC 119
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 60 TCCATTGATTAGAAGATGCCAACTCCGCAAGTGAAGACCGGTTTGTTCGTTGGGTTGAAC 119
Query 120 AAGGGACATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAAAA 179
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 AAAGGACATGTTGTCACCAGACGTGAATTAGCTCCTCGACCTCGTTCTCGCAAAGGAAAA 179
Query 180 ACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCTGGTCA-AGCTCC 238
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 180 ACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCTGGT-ATGGCTCC 238
Query 239 CTATGAGAAGAGAATCACTGAGCTTTTGAAGGTTGGTAAAGACAAACGTGCTCTTAAGGT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CTATGAGAAGAGAATCACTGAGCTTTTGAAGGTTGGTAAAGACAAACGTGCTCTTAAGGT 298
Query 299 TGCTAAGAGGAAGTTGGGAACCCACAAGAGAGCCAAGCGAAAGAGAGAGGAGATGTCCAG 358
||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 299 TGCTAAGAGGAAGTTGGGAACCCACAAGAGAGCTAAGAGGAAGAGAGAGGAGATGTCCAG 358
Query 359 TGTTCTCCGCAAGATGAGGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTC 418
| ||||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct 359 TACTCTCCGCAAAATGAGGTCTGGTGGTGGTGGTGCAACTGAGAAGAAGAAGTGAGCATC 418
Query 419 ATCTTAAGTTTGTGAATCGCTCGTAAAGAGTTATGGTTTCTTGTTGCAAAATCGTTATTA 478
|||||||||||| || | |||| ||||||||| |||||||||||||||||||| || |
Sbjct 419 ATCTTAAGTTTGGGA-TAGCTCTTAAAGAGTTTTGGTTTCTTGTTGCAAAATC---ATGA 474
Query 479 TGATTCCTAAGCTTCTCGAATTATGTTTTGTTAGAATATCGGACTTAAAGAGAGTTTTGT 538
||| |||||||||||| |||||||||||||| ||||||| | || |||| ||||||||
Sbjct 475 CGATAACTAAGCTTCTCGTATTATGTTTTGTTAAAATATCGAATTTGAAGACAGTTTTGT 534
Query 539 CTGAGACCAGTGACTCTGCCTTTAAACTATTTGCCTCTTTTGATCAATTATCTTTCTTTT 598
| ||||| |||||||||| |||||||||||||| |||||| ||||||||||||||||||
Sbjct 535 CACAGACCGGTGACTCTGCTTTTAAACTATTTGCTTCTTTTAATCAATTATCTTTCTTTT 594
Query 599 GCCTCTGAATTTATTGGAATA 619
|||||||||| ||||||||||
Sbjct 595 GCCTCTGAATGTATTGGAATA 615
> Ahg345495 jgi|Araly1|345495|fgenesh1_pg.C_scaffold_4001837
Length=339
Score = 385 bits (208), Expect = 2e-106
Identities = 297/340 (87%), Gaps = 6/340 (2%)
Strand=Plus/Plus
Query 75 ATGACAACTCCA-CAAGTGAAGACCGGTTTGTTCGTTGGGTTGAACAAGGGACATGTTGT 133
|||||||||||| | ||||||||||||||||||||||| |||||||| || || || ||
Sbjct 1 ATGACAACTCCAGC-GGTGAAGACCGGTTTGTTCGTTGGATTGAACAAAGGCCACGTCGT 59
Query 134 TACCAGACGTGAATTAGCTCCTCGTCCTC-GTTCTCGCAAAGGAAAAACGAGCAAGAGGA 192
|||||||| || ||||||||||||| | |||||||||||| ||||||||||||||||
Sbjct 60 CACCAGACGCGAGCTAGCTCCTCGTCC-CAATTCTCGCAAAGGGAAAACGAGCAAGAGGA 118
Query 193 CAATCTTTATCAGAAACTTGATAAAGGAAGTTGCTGG-TCAAGCTCCCTATGAGAAGAGA 251
| || || ||||||||| |||| |||||||| ||||| | ||||| ||||||||||||
Sbjct 119 CCATATTCATCAGAAACGTGATCAAGGAAGTAGCTGGAT-TGGCTCCTTATGAGAAGAGA 177
Query 252 ATCACTGAGCTTTTGAAGGTTGGTAAAGACAAACGTGCTCTTAAGGTTGCTAAGAGGAAG 311
|||||||||||| | |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 178 ATCACTGAGCTTCTCAAGGTTGGGAAAGACAAGCGTGCTCTTAAGGTTGCTAAGAGGAAG 237
Query 312 TTGGGAACCCACAAGAGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAG 371
||||| || ||||||||||| || | ||||||||||||||||| ||||||||||||||
Sbjct 238 TTGGGTACTCACAAGAGAGCTAAAAGGAAGAGAGAGGAGATGTCTGGTGTTCTCCGCAAG 297
Query 372 ATGAGGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGT 411
|| |||||||| ||||||||||| |||||||||||||||
Sbjct 298 ATCAGGTCTGGTGGTGGTGGTGCTGCTGAGAAGAAGAAGT 337
> Ahg321464 jgi|Araly1|321464|fgenesh1_pm.C_scaffold_4001521
Length=339
Score = 363 bits (196), Expect = 1e-99
Identities = 294/341 (86%), Gaps = 8/341 (2%)
Strand=Plus/Plus
Query 75 ATGACAACTCCA-CAAGTGAAGACCGGTTTGTTCGTTGGGTTGAACAAGGGACATGTTGT 133
|||||||||||| | ||||||||||||||||||||||| |||||||| || || || ||
Sbjct 1 ATGACAACTCCAGC-GGTGAAGACCGGTTTGTTCGTTGGATTGAACAAAGGCCACGTCGT 59
Query 134 TACCAGACGTGAATTAGCTCCTCGTCCTC-GTTCTCGCAAAGGAAAAACGAGCAAGAGGA 192
|||||||| || ||||||||||||| | |||||| ||||| ||||||||||||||||
Sbjct 60 CACCAGACGCGAGCTAGCTCCTCGTCC-CAATTCTCGTAAAGGGAAAACGAGCAAGAGGA 118
Query 193 CAATCTTTATCAGAAACTTGATAAAGGAAGTTGCTGG-TCAAGCTCCCTATGAGAAGAGA 251
| || || ||||||||| |||| |||||||| ||||| | ||||| ||||||||||||
Sbjct 119 CCATATTCATCAGAAACGTGATCAAGGAAGTAGCTGGAT-TGGCTCCTTATGAGAAGAGA 177
Query 252 ATCACTGAGCTTTTGAAGGTTGGTAAAGACAAACGTGCTCTTAAGGTTGCTAAGAGGAAG 311
|||||||||||| | |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 178 ATCACTGAGCTTCTCAAGGTTGGGAAAGACAAGCGTGCTCTTAAGGTTGCTAAGAGGAAG 237
Query 312 TTGGGAACCCACAAGAGAGCCAAGCGAAAGAGAGAGGAGATGTCCAG-TGTTCTCCGCAA 370
||||| || ||||||||||| || | ||||||||||||||||| | ||||||||||||
Sbjct 238 TTGGGTACTCACAAGAGAGCTAAAAGGAAGAGAGAGGAGATGTCT-GCTGTTCTCCGCAA 296
Query 371 GATGAGGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGT 411
||| |||||||| |||| || ||| |||||||||||||||
Sbjct 297 GATAAGGTCTGGTGGTGCTGCTGCTGCTGAGAAGAAGAAGT 337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22949996034
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5