BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53750.1
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323914 jgi|Araly1|323914|fgenesh1_pm.C_scaffold_5001458 2078 0.0
Ahg321462 jgi|Araly1|321462|fgenesh1_pm.C_scaffold_4001519 1507 0.0
Ahg487803 jgi|Araly1|487803|fgenesh2_kg.6__937__AT5G09810.1 1037 0.0
Ahg321465 jgi|Araly1|321465|fgenesh1_pm.C_scaffold_4001522 976 0.0
> Ahg323914 jgi|Araly1|323914|fgenesh1_pm.C_scaffold_5001458
Length=1284
Score = 2078 bits (1125), Expect = 0.0
Identities = 1248/1304 (96%), Gaps = 21/1304 (2%)
Strand=Plus/Plus
Query 154 ATGGCTGATGGTGAAGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTTAAG 213
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCTGATGGTGAAGACATTCAACCCCTTGTCTGTGACAACGGAACTGGAATGGTTAAG 60
Query 214 GCTGGTTTTGCTGGGGATGATGCACCGAGGGCTGTGTTTCCAAGTATTGTTGGCCGTCCT 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTGGTTTTGCTGGGGATGATGCACCGAGGGCTGTGTTTCCAAGTATTGTTGGCCGTCCT 120
Query 274 CGCCACACTGGAGTGATGGTTGGAATGGGACAGAAGGATGCATATGTTGGCGATGAAGCT 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGCCACACTGGAGTGATGGTTGGAATGGGACAGAAGGATGCATATGTTGGCGATGAAGCT 180
Query 334 CAATCCAAGCGTGGTATTCTTACCCTTAAATACCCTATTGAGCACGGTATTGTCAACAAT 393
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 181 CAATCCAAGCGTGGTATTCTAACCCTTAAATACCCAATTGAGCACGGTATTGTCAACAAT 240
Query 394 TGGGATGATATGGAAAAAATCTGGCATCATACTTTCTACAATGAGCTCCGTGTTGCTCCC 453
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGGATGATATGGAAAAAATATGGCATCATACTTTCTACAATGAGCTCCGTGTTGCTCCT 300
Query 454 GAGGAGCATCCTATTCTGCTCACTGAAGCGCCTCTTAACCCAAAGGCTAACCGTGAGAAG 513
||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GAGGAGCATCCCATTTTACTCACTGAAGCACCTCTTAACCCAAAGGCTAACCGTGAGAAG 360
Query 514 ATGACTCAGATCATGTTTGAAACCTTTAACGCTCCGGCTATGTATGTCGCCATTCAAGCT 573
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 361 ATGACTCAGATCATGTTTGAAACCTTTAATGCTCCTGCCATGTATGTCGCCATTCAAGCT 420
Query 574 GTCCTGTCGCTTTATGCTAGTGGTCGTACTACTGGTATTGTGCTTGACTCTGGAGATGGT 633
|||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 421 GTCCTGTCACTTTATGCTAGTGGCCGTACTACGGGTATTGTGCTCGACTCTGGAGATGGT 480
Query 634 GTGAGTCACACGGTCCCTATCTATGAGGGTTACGCTCTCCCGCATGCAATCCTACGTCTT 693
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 481 GTGAGTCACACGGTCCCTATCTATGAGGGTTACGCTCTTCCGCATGCCATCCTACGTCTT 540
Query 694 GATCTTGCAGGTCGTGACCTCACAGATGCTCTGATGAAGATCCTCACTGAGCGTGGTTAC 753
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 GATCTTGCAGGTCGTGACCTGACAGATGCTCTGATGAAGATCCTCACTGAGCGTGGTTAC 600
Query 754 TCTTTCACCACAACAGCTGAGCGTGAAATTGTCAGAGACATCAAGGAGAAGCTTTGCTAC 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTTTCACCACAACAGCTGAGCGTGAAATTGTCAGAGACATCAAGGAGAAGCTTTGCTAC 660
Query 814 ATTGCTCTTGACTATGAGCAGGAGCTTGAGACGGCTAAAACCAGCTCTTCTGTAGAGAAG 873
||||| |||||||| ||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 661 ATTGCCCTTGACTACGAGCAGGAGCTTGAGACGGCTAAAACCAGCTCTGCTGTTGAGAAG 720
Query 874 AACTATGAGTTACCTGATGGGCAAGTGATCACCATTGGATCTGAGCGTTTCCGTTGCCCT 933
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AACTATGAGTTACCTGATGGGCAAGTGATCACCATTGGATCTGAGCGTTTCCGTTGCCCA 780
Query 934 GAGGTTCTTTACCAGCCATCTATGATCGGTATGGAGAATGCTGGTATCCATGAAACCACC 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GAGGTTCTTTACCAGCCATCTATGATCGGTATGGAGAATGCTGGTATCCATGAAACCACC 840
Query 994 TACAACTCCATAATGAAATGTGATGTTGACATCAGAAAGGACTTGTATGGTAACATTGTG 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TACAACTCCATAATGAAATGTGATGTTGACATCAGAAAGGACTTGTATGGTAACATTGTG 900
Query 1054 CTCAGTGGTGGAACAACTATGTTCCCTGGAATTGCTGACAGAATGAGCAAAGAGATCACT 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTCAGTGGTGGAACAACTATGTTCCCTGGAATTGCTGACAGAATGAGCAAAGAGATCACT 960
Query 1114 GCTTTGGCACCGAGCAGCATGAAGATCAAAGTCGTTGCACCTCCTGAGAGGAAATACTCT 1173
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 961 GCTTTGGCACCGAGCAGCATGAAGATCAAAGTCGTTGCACCGCCGGAGAGGAAATACTCT 1020
Query 1174 GTCTGGATTGGAGGATCCATCTTGGCCTCCCTCAGTACCTTCCAGCAGATGTGGATCGCA 1233
||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1021 GTCTGGATTGGAGGATCCATCTTGGCCTCCCTCAGTACCTTCCAGCAGA-----AT---A 1072
Query 1234 AAGGCAGAATATGATGAGTCAGGCCCGTCGATTGTTCACCGGAAATGCTTTTGAGCTTGA 1293
| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1073 ---------T--GATGAGTCAGGCCCGTCGATTGTTCACCGGAAATGCTTTTGAGTTTGA 1121
Query 1294 AGTTAAGTCTGCTTCCGGAGAAGCCCTGGGGGTTTTCCAGTTTGTCCTTACTGGGTTTTT 1353
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1122 AGTTAAGTCTGCTTCCGGAGAAGCCCTGGGGGTTTTCCAATTTATCCTTACTGGGTTTTT 1181
Query 1354 ATCTTCGTTCTCTGCTCTTCTTTGTTTTTCTTCTTCAATATTTTCAGATTCTGGCCTAAG 1413
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1182 ATCTTCGTTCTCTGCTGTTCTTTGTTTTTGTTCTTCAATATTTTCAGATTCTGGCCTAAG 1241
Query 1414 ACATTTTGAAGAATTTACATTATCTGTTTGTAGT-GTTGGTTAA 1456
|||| |||||||| | |||||||||||||||||| || ||||||
Sbjct 1242 ACATATTGAAGAACTCACATTATCTGTTTGTAGTTGT-GGTTAA 1284
> Ahg321462 jgi|Araly1|321462|fgenesh1_pm.C_scaffold_4001519
Length=1134
Score = 1507 bits (816), Expect = 0.0
Identities = 1030/1136 (91%), Gaps = 4/1136 (0%)
Strand=Plus/Plus
Query 154 ATGGCTGATGGTGAAGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTTAAG 213
||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||
Sbjct 1 ATGGCTGATGGTGAAGACATTCAACCTCTTGTTTGCGACAATGGAACTGGAATGGTTAAG 60
Query 214 GCTGGTTTTGCTGGGGATGATGCACCGAGGGCTGTGTTTCCAAGTATTGTTGGCCGTCCT 273
|||||||||||||| ||||||||||| | ||||||||||| |||||||| || ||||||
Sbjct 61 GCTGGTTTTGCTGGAGATGATGCACCTCGAGCTGTGTTTCCTAGTATTGTGGGTCGTCCT 120
Query 274 CGCCACACTGGAGTGATGGTTGGAATGGGACAGAAGGATGCATATGTTGGCGATGAAGCT 333
|| ||||| || ||||||||||| ||||| || |||||||| ||||||||||||||||||
Sbjct 121 CGTCACACCGGTGTGATGGTTGGGATGGGGCAAAAGGATGCTTATGTTGGCGATGAAGCT 180
Query 334 CAATCCAAGCGTGGTATTCTT-ACCCTTAAATACCCTATTGAGCACGGTATTGTCAACAA 392
||||| ||||| |||||| || || || || |||||||||||||| || |||||||||||
Sbjct 181 CAATCGAAGCGAGGTATT-TTAACTCTCAAGTACCCTATTGAGCATGGGATTGTCAACAA 239
Query 393 TTGGGATGATATGGAAAAAATCTGGCATCATACTTTCTACAATGAGCTCCGTGTTGCTCC 452
||||||||||||||| || || ||||||||||||||||| ||||||||||||||||||||
Sbjct 240 TTGGGATGATATGGAGAAGATTTGGCATCATACTTTCTATAATGAGCTCCGTGTTGCTCC 299
Query 453 CGAGGAGCATCCTATTCTGCTCACTGAAGCGCCTCTTAACCC-AAAGGCTAACCGTGAGA 511
||||||||||| ||||| || || || || || |||||||| ||| ||||| |||||||
Sbjct 300 TGAGGAGCATCCGATTCTACTTACCGAGGCACCGCTTAACCCGAAA-GCTAATCGTGAGA 358
Query 512 AGATGACTCAGATCATGTTTGAAACCTTTAACGCTCCGGCTATGTATGTCGCCATTCAAG 571
|||||||||| ||||||||||| || ||||| || |||||||||||||| || ||||| |
Sbjct 359 AGATGACTCAAATCATGTTTGAGACTTTTAATGCCCCGGCTATGTATGTGGCTATTCAGG 418
Query 572 CTGTCCTGTCGCTTTATGCTAGTGGTCGTACTACTGGTATTGTGCTTGACTCTGGAGATG 631
|||| || || |||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 419 CTGTTCTTTCTCTTTATGCCAGTGGTCGTACAACCGGTATTGTGCTTGACTCTGGAGATG 478
Query 632 GTGTGAGTCACACGGTCCCTATCTATGAGGGTTACGCTCTCCCGCATGCAATCCTACGTC 691
||||||| ||||| || ||||||||||||||||| || || || ||||| ||||||||||
Sbjct 479 GTGTGAGCCACACTGTTCCTATCTATGAGGGTTATGCCCTTCCACATGCGATCCTACGTC 538
Query 692 TTGATCTTGCAGGTCGTGACCTCACAGATGCTCTGATGAAGATCCTCACTGAGCGTGGTT 751
|||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 539 TTGATCTTGCTGGTCGTGACCTCACGGATGCGCTGATGAAGATCCTAACTGAGCGTGGTT 598
Query 752 ACTCTTTCACCACAACAGCTGAGCGTGAAATTGTCAGAGACATCAAGGAGAAGCTTTGCT 811
||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 599 ACTCTTTCACCACCACAGCAGAGCGTGAAATTGTCAGAGACATAAAGGAGAAGCTTTGCT 658
Query 812 ACATTGCTCTTGACTATGAGCAGGAGCTTGAGACGGCTAAAACCAGCTCTTCTGTAGAGA 871
|||||||||||||||| ||||||||||| ||||| || ||||||||||| |||| ||||
Sbjct 659 ACATTGCTCTTGACTACGAGCAGGAGCTCGAGACAGCCAAAACCAGCTCAGCTGTTGAGA 718
Query 872 AGAACTATGAGTTACCTGATGGGCAAGTGATCACCATTGGATCTGAGCGTTTCCGTTGCC 931
||||||| ||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 719 AGAACTACGAGCTACCTGATGGGCAAGTGATAACCATTGGATCAGAGCGATTCCGTTGCC 778
Query 932 CTGAGGTTCTTTACCAGCCATCTATGATCGGTATGGAGAATGCTGGTATCCATGAAACCA 991
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 779 CAGAGGTTCTTTACCAGCCATCTATGATTGGTATGGAGAATGCTGGTATCCATGAAACCA 838
Query 992 CCTACAACTCCATAATGAAATGTGATGTTGACATCAGAAAGGACTTGTATGGTAACATTG 1051
|||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 839 CCTATAACTCCATAATGAAGTGTGATGTCGACATCAGAAAGGACTTGTACGGTAACATTG 898
Query 1052 TGCTCAGTGGTGGAACAACTATGTTCCCTGGAATTGCTGACAGAATGAGCAAAGAGATCA 1111
|||||||||||||||| || |||||||| ||||| || ||||||||||||||||| ||||
Sbjct 899 TGCTCAGTGGTGGAACCACAATGTTCCCAGGAATCGCCGACAGAATGAGCAAAGAAATCA 958
Query 1112 CTGCTTTGGCACCGAGCAGCATGAAGATCAAAGTCGTTGCACCTCCTGAGAGGAAATACT 1171
|||||||||| || |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 959 CTGCTTTGGCTCCAAGCAGCATGAAGATCAAAGTCGTTGCCCCTCCAGAGAGGAAATACT 1018
Query 1172 CTGTCTGGATTGGAGGATCCATCTTGGCCTCCCTCAGTACCTTCCAGCAGATGTGGATCG 1231
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CCGTCTGGATTGGAGGGTCTATCTTGGCCTCCCTCAGTACCTTCCAGCAGATGTGGATCG 1078
Query 1232 CAAAGGCAGAATATGATGAGTCAGGCCCGTCGATTGTTCACCGGAAATGCTTTTGA 1287
||||||||||||| || |||||||||||||||||||||||| |||||||||| |||
Sbjct 1079 CAAAGGCAGAATACGACGAGTCAGGCCCGTCGATTGTTCACAGGAAATGCTTCTGA 1134
> Ahg487803 jgi|Araly1|487803|fgenesh2_kg.6__937__AT5G09810.1
Length=1570
Score = 1037 bits (561), Expect = 0.0
Identities = 966/1161 (83%), Gaps = 30/1161 (3%)
Strand=Plus/Plus
Query 137 TTCCTCGAGAGTAG-AAAATGGCTGATGGTGAAGATATTCAACCCCTTGTCTGTGACAAT 195
|||||| | ||| | |||||||| |||||||| |||||||| || |||||||||||||||
Sbjct 156 TTCCTC-A-AGT-GAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAAT 212
Query 196 GGAACTGGAATGGTTAAGGCTGGTTTTGCTGGGGATGATGCACCGAGGGCTGTGTTTCCA 255
|||||||||||||| ||||||||||||||||| |||||||| ||||| || ||||| |||
Sbjct 213 GGAACTGGAATGGTGAAGGCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCA 272
Query 256 AGTATTGTTGGCCGTCCTC-GCCACACTGGAGTGATGGTTGGAATGGGACAGAAGGATGC 314
||||||||||| ||||| | | |||||||| || |||||||| ||||| ||||| |||||
Sbjct 273 AGTATTGTTGGGCGTCC-CAGGCACACTGGTGTCATGGTTGGTATGGGTCAGAAAGATGC 331
Query 315 ATATGTTGGCGATGAAGCTCAATCCAAGCGTGGTATTCTTACCCTTAAATACCCTATTGA 374
|| ||||| ||||||||||| |||||| | |||||||| || || || || || || ||
Sbjct 332 TTACGTTGGTGATGAAGCTCAGTCCAAGAGAGGTATTCTCACTCTGAAGTATCCAATCGA 391
Query 375 GCACGGTATTGTCAACAATTGGGATGATATGGAAAAAATCTGGCATCATACTTTCTACAA 434
|| ||||| || | ||| |||||||| |||||||| ||||||||||| |||||||||||
Sbjct 392 ACATGGTATCGTTAGCAACTGGGATGACATGGAAAAGATCTGGCATCACACTTTCTACAA 451
Query 435 TGAGCTCCGTGTTGCTCCCGAGGAGCATCCTATTCTGCTCACTGAAGCGCCTCTTAACCC 494
|||||| ||||| || || |||||||| || |||| ||||| || || |||||||||||
Sbjct 452 TGAGCTTCGTGTGGCACCTGAGGAGCACCCGGTTCTTCTCACAGAGGCACCTCTTAACCC 511
Query 495 -AAAGGCTAACCGTGAGAAGATGACTCAGATCATGTTTGAAACCTTTAACGCTCCGGCTA 553
|||| ||||| | |||||||||||||||||||||||||| || ||||| | ||| || |
Sbjct 512 TAAAG-CTAACAGGGAGAAGATGACTCAGATCATGTTTGAGACATTTAATGTTCCTGCCA 570
Query 554 TGTATGTCGCCATTCAAGCTGTCCTGTCGCTTTATGCTAGTGGTCGTACTACTGGTATTG 613
||||||| |||||||| ||||| || || || || || ||||||||||| || |||||||
Sbjct 571 TGTATGTTGCCATTCAGGCTGTTCTTTCTCTATACGCCAGTGGTCGTACAACCGGTATTG 630
Query 614 TGCTTGACTCTGGAGATGGTGTGAGTCACACGGTCCCTATCTATGAGGGTTACGCTCT-C 672
|||| |||||||| ||||||||| |||||| || || ||||| ||||| || ||||| |
Sbjct 631 TGCTCGACTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTC 690
Query 673 CCGCATGCAATCCTACGTCTTGATCTTGCAGGTCGTGACCTCACAGA-TGCTCTGATGAA 731
|| ||||| ||||| |||||||||||||| ||||| || |||||||| | | || |||||
Sbjct 691 CC-CATGCTATCCTTCGTCTTGATCTTGCGGGTCGGGATCTCACAGACTCC-CTCATGAA 748
Query 732 GATCCTCACTGAGCGTGGTTAC-TCTTTCACCACAACAGCTGAGCGTGAAATTGTCAGAG 790
||| ||||||||| | |||||| | || ||||||||| || || || ||||||||| | |
Sbjct 749 GATTCTCACTGAGAGAGGTTACATGTT-CACCACAACCGCAGAACGGGAAATTGTCCGTG 807
Query 791 ACATCAAGGAGAAGCTTTGCTACAT-T-GCTCTTGACTATGAGCAGGAGCTTGAGACGGC 848
|||| |||||||| ||| ||| || | ||||||||||| ||||| ||||| ||||| ||
Sbjct 808 ACATAAAGGAGAAACTT-GCTT-ATGTCGCTCTTGACTACGAGCAAGAGCTGGAGACAGC 865
Query 849 TAAAACCAGCTCTTCTGTAGAGAAGAACTATGAGTTACCTGATGGGCAAGTGATCACCAT 908
|| | ||| ||||| || ||||||||||| ||| |||| ||||| ||||| ||||||||
Sbjct 866 CAAGAGCAGTTCTTCAGTGGAGAAGAACTACGAGCTACCCGATGGACAAGTCATCACCAT 925
Query 909 TGGATCTGAGCGTTTCCGTTGCCCTGAGGTTCT-TTACCAGCCATCTATGATCGGTATGG 967
||| ||||| | |||||||||||||| ||||| || ||||||||| | ||||| ||||
Sbjct 926 CGGAGCTGAGAGATTCCGTTGCCCTGAAGTTCTGTT-CCAGCCATCGCTCATCGGAATGG 984
Query 968 A-GAATGCTGGTATCCATGAAACCACCTACAACTCCATAATGAAATGTGATGTTGACATC 1026
| | | |||| ||||||||||| || ||||||||||| |||||||||||||| || |||
Sbjct 985 AAGC-TCCTGGAATCCATGAAACAACTTACAACTCCATCATGAAATGTGATGTCGATATC 1043
Query 1027 AGAAAGGA-CTTGTATGGTAACATTGTGCTCAGTGGTGGAACAACTATGTTCCCTGGAAT 1085
|| ||||| || ||||| ||||| || ||||||||||| | || |||||||| |||||
Sbjct 1044 AGGAAGGATCTC-TATGGAAACATCGTCCTCAGTGGTGGTTCCACCATGTTCCCAGGAAT 1102
Query 1086 TGCTGACAGAATGAGCAAAGAGATCACTGCT-TTGGCACCGAGCAGCATGAAGATCAAAG 1144
||||||| | |||||||||||||||||||| ||| |||| ||||||||||||||||| |
Sbjct 1103 TGCTGACCGTATGAGCAAAGAGATCACTGCGCTTG-CACCTAGCAGCATGAAGATCAAGG 1161
Query 1145 TCGTTGCACCTCCTGAGAGGAAATACTCTGTCTGGATTGGAGGATCCATC-TTGGCCTCC 1203
| || ||||| || ||||| |||||| ||||||||| |||||||| ||| ||| | |||
Sbjct 1162 TGGTGGCACCGCCAGAGAGAAAATACAGTGTCTGGATCGGAGGATCAATCCTTG-CATCC 1220
Query 1204 CTCAGTACCTTCCAGCAGATGTGGATCGCAAAG-GCAGAATATGATGAGTCAGGCCCGTC 1262
||||| |||||||| ||||||||||| ||||| || || || |||||||| || || ||
Sbjct 1221 CTCAGCACCTTCCAACAGATGTGGATTTCAAAGAGC-GAGTACGATGAGTCGGGTCCATC 1279
Query 1263 GATTGTTCACCGGAAATGCTT 1283
|||||||||| ||||||||||
Sbjct 1280 GATTGTTCACAGGAAATGCTT 1300
> Ahg321465 jgi|Araly1|321465|fgenesh1_pm.C_scaffold_4001522
Length=1101
Score = 976 bits (528), Expect = 0.0
Identities = 700/785 (89%), Gaps = 4/785 (1%)
Strand=Plus/Plus
Query 154 ATGGCTGATGGTGAAGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTTAAG 213
||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||
Sbjct 1 ATGGCTGATGGTGAAGACATTCAACCTCTTGTTTGCGACAATGGAACTGGAATGGTTAAG 60
Query 214 GCTGGTTTTGCTGGGGATGATGCACCGAGGGCTGTGTTTCCAAGTATTGTTGGCCGTCCT 273
|||||||||||||||||||||||||| | ||||||||||| |||||||| || ||||||
Sbjct 61 GCTGGTTTTGCTGGGGATGATGCACCTCGAGCTGTGTTTCCTAGTATTGTGGGTCGTCCT 120
Query 274 CGCCACACTGGAGTGATGGTTGGAATGGGACAGAAGGATGCATATGTTGGCGATGAAGCT 333
|| ||||| || ||||||||||| ||||| || |||||||| ||||||||||||||||||
Sbjct 121 CGTCACACCGGTGTGATGGTTGGGATGGGGCAAAAGGATGCTTATGTTGGCGATGAAGCT 180
Query 334 CAATCCAAGCGTGGTATTCTTACC-CTTAAATACCCTATTGAGCACGGTATTGTCAACAA 392
|||||||| || |||||| ||| | || || |||||||||||||| || ||||| |||||
Sbjct 181 CAATCCAAACGAGGTATT-TTAACTCTCAAGTACCCTATTGAGCATGGGATTGTTAACAA 239
Query 393 TTGGGATGATATGGAAAAAATCTGGCATCATACTTTCTACAATGAGCTCCGTGTTGCTCC 452
||||||||||||||| || || |||||||| |||||||| |||||||| |||||||||||
Sbjct 240 TTGGGATGATATGGAGAAGATTTGGCATCACACTTTCTATAATGAGCTACGTGTTGCTCC 299
Query 453 CGAGGAGCATCCTATTCTGCTCACTGAAGCGCCTCTTAACCC-AAAGGCTAACCGTGAGA 511
||||||||||| ||| | || || || || || |||||||| |||| |||| |||||||
Sbjct 300 TGAGGAGCATCCGATTTTACTTACCGAGGCACCGCTTAACCCGAAAG-CTAATCGTGAGA 358
Query 512 AGATGACTCAGATCATGTTTGAAACCTTTAACGCTCCGGCTATGTATGTCGCCATTCAAG 571
|||||||||| ||||||||||| || ||||| || |||||||||||||| || ||||| |
Sbjct 359 AGATGACTCAAATCATGTTTGAGACTTTTAATGCCCCGGCTATGTATGTGGCTATTCAGG 418
Query 572 CTGTCCTGTCGCTTTATGCTAGTGGTCGTACTACTGGTATTGTGCTTGACTCTGGAGATG 631
|||| || || |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 CTGTTCTTTCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTTGACTCTGGAGATG 478
Query 632 GTGTGAGTCACACGGTCCCTATCTATGAGGGTTACGCTCTCCCGCATGCAATCCTACGTC 691
||||||| ||||| || ||||||||||||||||| || || || ||||| ||||||||||
Sbjct 479 GTGTGAGCCACACTGTTCCTATCTATGAGGGTTATGCCCTTCCACATGCGATCCTACGTC 538
Query 692 TTGATCTTGCAGGTCGTGACCTCACAGATGCTCTGATGAAGATCCTCACTGAGCGTGGTT 751
|||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 539 TTGATCTTGCTGGTCGTGACCTCACGGATGCGCTGATGAAGATCCTAACTGAGCGTGGTT 598
Query 752 ACTCTTTCACCACAACAGCTGAGCGTGAAATTGTCAGAGACATCAAGGAGAAGCTTTGCT 811
||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 599 ACTCTTTCACCACCACAGCAGAGCGTGAAATTGTCAGAGACATAAAGGAGAAGCTTTGCT 658
Query 812 ACATTGCTCTTGACTATGAGCAGGAGCTTGAGACGGCTAAAACCAGCTCTTCTGTAGAGA 871
|||||||||||||||| ||||||||||| ||||| || ||||||||||| |||| ||||
Sbjct 659 ACATTGCTCTTGACTACGAGCAGGAGCTCGAGACAGCCAAAACCAGCTCAGCTGTTGAGA 718
Query 872 AGAACTATGAGTTACCTGATGGGCAAGTGATCACCATTGGATCTGAGCGTTTCCGTTGCC 931
||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 719 AGAACTACGAGCTACCTGATGGGCAAGTGATCACCATTGGATCAGAGCGATTCCGTTGCC 778
Query 932 CTGAG 936
| |||
Sbjct 779 CAGAG 783
Score = 488 bits (264), Expect = 5e-137
Identities = 302/321 (94%), Gaps = 0/321 (0%)
Strand=Plus/Plus
Query 967 GAGAATGCTGGTATCCATGAAACCACCTACAACTCCATAATGAAATGTGATGTTGACATC 1026
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 781 GAGAATGCTGGTATCCATGAAACCACCTATAACTCCATAATGAAGTGTGATGTCGACATC 840
Query 1027 AGAAAGGACTTGTATGGTAACATTGTGCTCAGTGGTGGAACAACTATGTTCCCTGGAATT 1086
|||||||||||||| |||||||||||||||||||||||||| || |||||||| |||||
Sbjct 841 AGAAAGGACTTGTACGGTAACATTGTGCTCAGTGGTGGAACCACAATGTTCCCAGGAATC 900
Query 1087 GCTGACAGAATGAGCAAAGAGATCACTGCTTTGGCACCGAGCAGCATGAAGATCAAAGTC 1146
|| ||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 901 GCCGACAGAATGAGCAAAGAAATCACTGCTTTGGCTCCAAGCAGCATGAAGATCAAAGTC 960
Query 1147 GTTGCACCTCCTGAGAGGAAATACTCTGTCTGGATTGGAGGATCCATCTTGGCCTCCCTC 1206
||||| ||||| |||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 961 GTTGCCCCTCCAGAGAGGAAATACTCCGTCTGGATTGGAGGGTCTATCTTGGCCTCCCTC 1020
Query 1207 AGTACCTTCCAGCAGATGTGGATCGCAAAGGCAGAATATGATGAGTCAGGCCCGTCGATT 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AGTACCTTCCAGCAGATGTGGATCGCAAAGGCAGAATATGATGAGTCAGGCCCGTCGATT 1080
Query 1267 GTTCACCGGAAATGCTTTTGA 1287
|||||| |||||||||| |||
Sbjct 1081 GTTCACAGGAAATGCTTCTGA 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58316165095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5