BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53760.1
Length=2667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485770 jgi|Araly1|485770|fgenesh2_kg.5__1762__AT3G53760.1 3751 0.0
> Ahg485770 jgi|Araly1|485770|fgenesh2_kg.5__1762__AT3G53760.1
Length=2452
Score = 3751 bits (2031), Expect = 0.0
Identities = 2174/2244 (97%), Gaps = 6/2244 (0%)
Strand=Plus/Plus
Query 100 CAATGTTGCACGAGCTTCTTCTAGCTCTCTTAGGCTTCACCGGCGATCTCATCGTCGACG 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAATGTTGCACGAGCTTCTTCTAGCTCTCTTAGGCTTCACCGGCGATCTCATCGTCGACG 60
Query 160 AGCGTGAGCAACGGAAAACCCTAGGCCTCGCTTTCAACTCCGATTCACCTCTTTCTGATG 219
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 AGCGAGAGCAACGGAAAACCCTAGGCCTCGCTTTCAACTCCGATTCACCTCTCTCTGATG 120
Query 220 AATGTACATTCAAACTCGCTCCTGACATCTCCTTCATCGAACCCAGCGAAAGGGACTTGA 279
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATGTACCTTCAAACTCGCTCCTGACATCTCCTTCATCGAACCCAGCGAAAGGGACTTGA 180
Query 280 TCGAAAGGTTGATCAAGTTAGGGTTCTACTATCGAGAACTCGACCGGTTTGCGAAGAAGT 339
|||| |||||||||||| ||||||||||||||||||| || |||||||||||||||||||
Sbjct 181 TCGAGAGGTTGATCAAGCTAGGGTTCTACTATCGAGAGCTGGACCGGTTTGCGAAGAAGT 240
Query 340 CTCGCAATTTGAGCTGGATTAGGTCTGTGACCAGTGTGCATCCGTTGGAACGGGCTGATG 399
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 CTCGCAATTTGAGCTGGATTAGGTCTGTGACCAGTGTACATCCGTTGGAACGGGCTGATG 300
Query 400 AATTGTCGAAGCAGAGTAGAGAGAAGAAGCCTAGCGTGTACCGTAGAGCCATTGCTAATG 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATTGTCGAAGCAGAGTAGAGAGAAGAAGCCTAGCGTGTACCGTAGAGCCATTGCTAATG 360
Query 460 GAATTGGGGAGATTCTTTCGGTCTATAGATCTGCGGTTCTTCACATTGAACAGAAGCTAT 519
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAATTGGGGAGATTCTTTCAGTCTATAGATCTGCGGTTCTTCACATTGAACAGAAGCTAT 420
Query 520 TGGCGGAGACTACGCCTATTCTGGCTACGGTTACAGAGGGGCTCAATAAGTTTTTCGTTC 579
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 421 TGGCGGAGACTACGCCTATTCTGGCTATGGTTACACAGGGGCTCAATAAGTTTTTCGTTC 480
Query 580 TTTTCCCGCCCCTGTATGAGGTAATTCTTGAGATTGAGCGTGATGATATTCGTGGAGGGC 639
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 TTTTCCCGCCCCTGTATGAGGTAATTCTTGAGATTGAGCGTGATGATGTTCGTGGAGGGC 540
Query 640 AGCTTCTTAATGTATTGAATAAAAGATGTCATTGTGGTGTGCCTGAATTGAGGACTTGTC 699
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 AGCTTCTGAATGTATTGAATAAAAGGTGTCATTGTGGTGTGCCTGAATTGAGGACTTGTC 600
Query 700 TCCAAAGGCTTCTTTGGAATGGACATCAGGTCATGTATAATCAGCTTGCAGCTTGGATGG 759
| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 601 TTCAAAGGCTTCTTTGGCATGGACATCAGATCATGTATAATCAGCTTGCGGCTTGGATGG 660
Query 760 TCTATGGCATTCTTCAGGATCCTCATGGAGAATTTTTCATCAAGAGGCAGGACGATGGTG 819
||||||| ||||| |||||||||||||||||||||||||||||||| || || ||||| |
Sbjct 661 TCTATGGGATTCTCCAGGATCCTCATGGAGAATTTTTCATCAAGAGACAAGAAGATGGGG 720
Query 820 ATTTAGATCATCGCTCATCTCAGGAAGAAG-TATCTGAAAAGTTGGCTCGTACCTCAGTT 878
|||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 721 ATTTAGATCACCGCTCATCTCAGGAAG-AGATATCTGAAAAGTTGGCTCGTACCTCAGTT 779
Query 879 CATGAGACATCTTTAACTGATTGGCACTCTGGATTTCACATTTCTTTGGATATGTTACCT 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CATGAGACATCTTTAACTGATTGGCACTCTGGATTTCACATTTCTTTGGATATGTTACCT 839
Query 939 GATTATATTCCTATGCGCCTTGGTGAATCAATTCTTTTTGCGGGGAAAGCCATAAGGGTT 998
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 840 GATTATATTTCTATGCGTCTTGGTGAATCAATTCTTTTTGCGGGGAAAGCCATAAGAGTT 899
Query 999 TTGCGAAATCCCAGTCCTGCTTTCCAGTTCCAGAAGGACAAGAGTTTTCAGCAAACAATG 1058
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 900 TTGCGAAATCCCAGTCCTGCTTTCCAGTTCCAGAAGGACAAGAGTTTTCAGCAAACCATG 959
Query 1059 CGTGGCTCCCAGAGAATTCGA-GGATTTATGCATAGTGATTTCCCTGAAACAGAAACTGA 1117
|||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 960 GGTGGCTCCCAGAGAATTC-AGGGATTTATGCATAGTGATTTCCCTGAAACGGAAACTGA 1018
Query 1118 GTTAGATGCAGATCTTACAGGGGGAGAGTTGCTTCCACAATCTGAGGCAGATAAGATTGA 1177
|| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1019 GTCAGATGCAGATCTTACAGGGGGAGAGTTACTTCCACAATCTGAGGCAGACAAGATTGA 1078
Query 1178 AGCTATGCTCAAAGATTTAAAGGAATCATCTGAGTTTCACAAGAGATCATTTGAGTGCAC 1237
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1079 AGCTATGCTCAAAGAATTAAAGGAATCATCTGAGTTTCACAAGAGATCATTCGAGTGTAC 1138
Query 1238 TGTTGATTCTGTTCGAGCAATAGCAGCCAGTCATCTTTGGCAGCTTGTCGTTGTGCGTGC 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TGTTGATTCTGTTCGAGCAATAGCAGCCAGTCATCTTTGGCAGCTTGTCGTTGTGCGTGC 1198
Query 1298 TGATCTCAATGGTCATCTTAAAGCTCTGAAAGATTATTTCCTCTTAGAAAAAGGAGATTT 1357
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGATCTCAGTGGTCATCTTAAAGCTCTGAAAGATTATTTCCTCTTAGAAAAAGGAGATTT 1258
Query 1358 CTTTCAGTGCTTTCTGGAGGAGAGTCGTCAGTTGATGCGTTTGCCACCTCGCCAGTCAAC 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CTTTCAGTGCTTTCTGGAGGAGAGTCGTCAGTTGATGCGTTTGCCACCTCGCCAGTCAAC 1318
Query 1418 TGGAGAATCTGATCTTATGGTACCGTTTCAGTTGGCTGCAACAAAAACCATTGCGGAGGA 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TGGAGAATCTGATCTTATGGTACCGTTTCAGTTGGCTGCAACAAAAACCATTGCGGAGGA 1378
Query 1478 AGATAAGTATTTCTCTAGGGTATCCCTACGGATGCCTTCATTTGGAGTCACAGTCAGATC 1537
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1379 AGATAAGTATTTCTCTAGGGTATCCCTACGGATGCCGTCATTTGGAGTCACAGTCAGATC 1438
Query 1538 TTCTCAAGCTGACATGGTGAGATCTAAAGTATCTCTCACCGGGAAGGCAAATCTTACATC 1597
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1439 TTCTCAAGCTGACATGGCGAGATCTAAAGTATCTCTCGCCGGGAAGGCAAATCTTACATC 1498
Query 1598 AGACACCTCTGTGGATGGCTGGGACGCTATTGC-TCTGGAGTATTCTGTTGATTGGCCCA 1656
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1499 AGACACCTCTGTGGATGGCTGGGACGCTATTGCGT-TGGAGTATTCTGTTGATTGGCCCA 1557
Query 1657 TGCAACTGTTTTTCACTCAAGAAGTGCTTTCTAAGTATCTCAAGGTGTTCCAATATTTGA 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TGCAACTGTTTTTCACTCAAGAAGTGCTTTCTAAGTATCTCAAGGTGTTCCAATATTTGA 1617
Query 1717 TACGGCTAAAGAGAACTCAGATGGAATTGGAGAAATCATGGGCTTCTGTAATGCATCAAG 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TACGGCTAAAGAGAACTCAGATGGAATTGGAGAAATCATGGGCTTCTGTAATGCATCAAG 1677
Query 1777 ATCATATAGAATCTGCTCAACATCGAAAAGATGGTTTAAACGGATCAACATCTCAACAAA 1836
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1678 ATCATATAGAATCTGCTCAACATCGGAAAGATGGTATAAACGGATCAACATCTCAACAAA 1737
Query 1837 GACGACAAGGAATACGACCCATGTGGCGTGTTAGAGAGCACATGGCGTTTTTGATAAGGA 1896
|| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1738 GAAGACAAGGAATACGACCCATGTGGCGTGTTAGAGAGCACATGGCATTTCTGATAAGGA 1797
Query 1897 ATCTTCAGTTTTACATTCAGGTTGACGTGATAGAATCTCAATGGAAGGTGTTGCAAACTC 1956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 ATCTTCAGTTTTACATTCAGGTTGACGTGATAGAATCTCAATGGAAGGTGTTGCAAACTC 1857
Query 1957 ACATCCACGATTCTCAAGATTTCACTGAACTCGTTGGCTTCCATCAAGAGTACCTCTCCG 2016
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1858 ACATCCACGATTCTCAAGATTTCACTGAACTCGTTGGCTTCCATCAAGAGTATCTCTCCG 1917
Query 2017 CTCTTATCTCTCAATCTTTCCTCGACATTGGTTCCGTCTCAAGGATACTTGATAGCATCA 2076
||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1918 CTCTTATTTCACAATCTTTCCTCGACATTGGTTCCGTCTCAAGGATACTCGATAGCATAA 1977
Query 2077 TGAAACTATGTCTCCAGTTCTGCTGGAACATTGAGAATCAAGAAAGCAACCCAAACACTT 2136
||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1978 TGAAACTCTGTCTCCAGTTCTGCTGGAACATTGAGAGTCAAGAAAGCAATCCAAACACTT 2037
Query 2137 CAGAACTTGAAAACATAGCTGAGGAATTCAACAAGAAGTCAAATTCCTTGTACACCATAC 2196
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2038 CGGAACTTGAAAACATAGCTGAGGAATTCAACAAGAAGTCGAATTCCTTGTACACCATAT 2097
Query 2197 TGAGAAGCAGCAAACTCGCCGGGAGCCAGCGAGCCCCGTTCTTGAGACGTTTTCTTTTAC 2256
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2098 TGAGAAGCAGCAAACTCGCCGGGAGCCAGAGAGCCCCGTTCTTGAGACGTTTTCTTTTAC 2157
Query 2257 GTCTAAACTTCAATTCCTTTTACGAGGCAACTGCAAGGGGCGTGTTAAACGTTGTCCGAC 2316
| ||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 2158 GCCTAAATTTCAATTCCTTTTACGAGGCAACTGCAAGGGGGGTGTTGAATGTTGTCCGAC 2217
Query 2317 AACGCCCAGCGCTTCCATTGTAAA 2340
|||||||||| |||||||||||||
Sbjct 2218 AACGCCCAGCTCTTCCATTGTAAA 2241
Score = 174 bits (94), Expect = 3e-42
Identities = 111/119 (93%), Gaps = 1/119 (1%)
Strand=Plus/Plus
Query 2437 AGC-ATTTGTCTGATCCTCAAACCAGGATGACATGACGCCACCAATGGAATATACATAAA 2495
||| ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2269 AGCTATTGGTCTGATCCTCAAACCAGGATCACATGTCGCCACCAATGGAATATACATAAA 2328
Query 2496 TATATGTGGACAGAGTTCGTGCTCACACGCCTTTCCTTTGTAAGAATCTGTGTACTGTG 2554
||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 2329 TATATGTTGACAGAGTTTTTGCTCACACGCCTTTCCTTTGTAAGAATCTGTGTGCTGTG 2387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100596337045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5