BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G53770.1

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg323916 jgi|Araly1|323916|fgenesh1_pm.C_scaffold_5001460           553    4e-157


> Ahg323916 jgi|Araly1|323916|fgenesh1_pm.C_scaffold_5001460
Length=363

 Score =  553 bits (299),  Expect = 4e-157
 Identities = 339/359 (94%), Gaps = 0/359 (0%)
 Strand=Plus/Plus

Query  1    ATGTCTCAATCACTTTTCAATCTCAAAAGTTTATCTCGCTCGATCAACAACACAATCAGA  60
            |||||||||||||||| ||||||||||||||| ||||| || |||||||||||||||| |
Sbjct  1    ATGTCTCAATCACTTTCCAATCTCAAAAGTTTCTCTCGATCAATCAACAACACAATCATA  60

Query  61   ATGAGAAGATACATTGTGATCACAAAAGCCTCTCAAAGGGCATATACAATTGGAAGTAGT  120
            |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct  61   ATGAGAAGATACATTGTGATCACAAAAGCCTCTCAAAGGGGATATACAACTGGAAGTAGT  120

Query  121  CAAGAGAAGCCATCGTGGGCATCAGACCCTGATACCGGATACTTTAGACCCGAGACCGCT  180
            | |||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||
Sbjct  121  CGAGAGAAGCCATCGTGGACATCAGACCCTGATACCGGATACTTTAGACCTAAGACCGCT  180

Query  181  GCAAAAGAGTTAGATCCATACATTGCAAAAACCTCTCAAGTTCAAGGTAAAATGATGAGA  240
             ||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||
Sbjct  181  ACAAAAGAGTTAGATCCATACATCACAAAAACCTCTCAAATTCAAGGTAAAATGATGAGA  240

Query  241  GGAGAAGAGTTATGGTGGATGCCTGATCCTCAGACCGGATACTATAGACCAGACAATTTT  300
            |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct  241  GGAGAAGAGTTATGGTGGATGCCTGATCCTCACACCGGATACTATAGACCCGACAATTTT  300

Query  301  GCCAGAGAGCTTGACGCAGTTGAGCTACGGTCTTTGCACTTCAACAAGAATCAAAAGAC  359
            ||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||
Sbjct  301  GCCAGAGAGCTTGACGCAGTTGAGCTACGGTCTTTGCACCTCAATAAGAATCACAAGAC  359



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13392611739


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5