BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53780.2
Length=1724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323917 jgi|Araly1|323917|fgenesh1_pm.C_scaffold_5001461 1869 0.0
> Ahg323917 jgi|Araly1|323917|fgenesh1_pm.C_scaffold_5001461
Length=1182
Score = 1869 bits (1012), Expect = 0.0
Identities = 1128/1185 (95%), Gaps = 3/1185 (0%)
Strand=Plus/Plus
Query 379 ATGGGTGAGAAAGATTCAGAAACAGCTCCGATTTGGGGGAAAACTCgagagagagagagG 438
|||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||
Sbjct 1 ATGGGTGAGAAAGATTCAGAAACAGCTCCGATTTGGGGAAAAACTGGACAGAGAGAGAGC 60
Query 439 AGCAACAACAACAATATACAGCCAATGGATTTAGAGTCGTCCTCTTCTGTATCTGGGCAA 498
|||||||||||||| ||||| |||||||||||||||||| |||||| |||||||||||
Sbjct 61 AGCAACAACAACAACATACACCCAATGGATTTAGAGTCG---TCTTCTCTATCTGGGCAA 117
Query 499 CAACGATCGTTGACTCAGAGTCGAAGTTCTTATGAAGAACGAGGTAGAGGAGTTAAAGAG 558
|| ||||| |||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 118 CAGCGATCTTTGAATCGGAGTCGAAGTTCTTATGAAGAACGAGGAAGAGGAGTTAAAGAG 177
Query 559 TTTCGGAGTTGGTTTCCTTGGCTCATTCCTTGTTTCGTTGTTGCTAACGTTGCCGTCTTC 618
|||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| ||
Sbjct 178 TTTCGGAGTTGGTTCCCTTGGCTCATTCCATGTTTCGTTGTTGCTAACGTTGTCGTGTTT 237
Query 619 GTGATCACCATGTATGTCAACAATTGTCCTAAGAAATCTGGAGATTGTTTTGCTGATTTC 678
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 238 GTGATCACCATGTATGTCAACAATTGTCCGAAGAAATCTGGAGATTGTTTTGCTGATTTC 297
Query 679 TTGGGTCGTTTCTCGTTTCAGAACACCAGAGAAAATCCTCTTCTGGGTCCTTCCTCTCTC 738
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 298 TTGGGTCGATTCTCGTTTCAGAACACCAGAGAGAATCCTCTTCTGGGTCCTTCCTCTCTC 357
Query 739 ACGTTACAAACAATGGGTGGATTAGATGTTAAAAAAGTGGTTAAAGGAGATGAAGGATGG 798
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 358 ACGTTACAAACAATGGGTGGATTGGATGTAAAAAAAGTGGTTAAAGGAGATGAAGGATGG 417
Query 799 CGTCTACTTTCTTGCAATTGGTTACATGGAGGAGTTGTTCATTTACTGATGAACATGTTG 858
||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||
Sbjct 418 CGTCTACTTTCTTGCAACTGGTTACATGGAGGAGTTGTTCATTTATTGGTGAACATGTTG 477
Query 859 ACTCTTTTATTCATCGGTATACGTATGGAACGTGAATTTGGTTTTATTCGGATTGGATTG 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ACTCTTTTATTCATCGGTATACGTATGGAACGTGAATTTGGTTTTATTCGGATTGGATTG 537
Query 919 CTTTATTTGATATCAGGGTTTGGAGGAAGCATATTGTCAGCTCTTTTCCTCCGTTCAAAC 978
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 538 CTTTATTTGATATCAGGTTTTGGAGGAAGTATATTGTCAGCTCTTTTCCTCCGCTCAAAC 597
Query 979 ATCTCTGTTGGAGCATCTGGTGCCGTGTTTGGTTTACTTGGAGGAATGCTCTCTGAGATC 1038
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 598 ATCTCTGTTGGAGCATCTGGTGCGGTGTTTGGTTTACTTGGTGGAATGCTCTCTGAGATC 657
Query 1039 TTTATCAACTGGACAATCTATTCTAACAAGGTTGTGACGATTGTAACTCTTGTATTGATT 1098
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 658 TTTATCAACTGGACGATCTATTCTAACAAGGTTGTGACGATTATAACTCTTGTAATAATT 717
Query 1099 GTGGCGGTGAACTTGGGGCTCGGTGTGCTCCCTGGAGTAGATAACTTTGCTCATATCGGA 1158
||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||
Sbjct 718 GTGGCGGTGAACTTGGGACTTGGTGTGCTCCCGGGAGTAGATAACTTTGCTCATATAGGA 777
Query 1159 GGGTTTGCTACAGGTTTTCTTCTTGGATTTGTGCTCTTAATCCGTCCCCATTACGGATGG 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GGGTTTGCTACAGGTTTTCTTCTTGGATTTGTGCTCTTAATCCGTCCCCATTACGGATGG 837
Query 1219 ATCAACCAAAGAAACGGTCCTGGAGCTAAACCCCACAGGTTCAAGATATATCAGGGCATA 1278
|||||||||||||||| ||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 838 ATCAACCAAAGAAACGCTCCAGGAGCTAAGCCCCACAGGTTCAAGATGTATCAGGGCATA 897
Query 1279 TTATGGACTATCTCTCTTCTCATCTTGGTCGCTGGGTTCATTGTTGGATTGATCTCTCTC 1338
|||||||| |||||||||||| |||||||||| ||||||||| ||||||||||||||||
Sbjct 898 TTATGGACCATCTCTCTTCTCCTCTTGGTCGCCGGGTTCATTACTGGATTGATCTCTCTC 957
Query 1339 TTCAACAATGTCGATGGAAACGAACATTGTTCGTGGTGTCATTATCTTTCATGTGTTCCA 1398
|||||||| || ||||||||||||||||| || ||||||||||||||||||||| |||||
Sbjct 958 TTCAACAACGTTGATGGAAACGAACATTGCTCATGGTGTCATTATCTTTCATGTATTCCA 1017
Query 1399 ACATCTAAATGGAGCTGTAACCGAGAACCAGCCTCTTGCACGACGACTCAATTAGGTAAC 1458
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ACTTCTAAATGGAGCTGTAACCGAGAACCAGCCTCTTGCACGACGACTCAATTAGGTAAC 1077
Query 1459 CAATTGAGCATGACTTGTTTGAGGAATGGGAAATCAGCATCTTACATTTTGGCAAATCCC 1518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CAATTGAGCATGACTTGTTTGAGGAATGGGAAATCAGCATCTTACATTTTGGCAAATCCC 1137
Query 1519 TCGGATTCACGGATTAATAGCTTATGTGTTCAGCTTTGCCGTTGA 1563
|||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1138 TCGGATTCACGGATTAATAGCTTATGTGTTCAGCTTTGTCGTTGA 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64677236010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5