BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53790.1
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898314 jgi|Araly1|898314|Al_scaffold_0005_2280 972 0.0
> Ahg898314 jgi|Araly1|898314|Al_scaffold_0005_2280
Length=1200
Score = 972 bits (526), Expect = 0.0
Identities = 639/693 (92%), Gaps = 10/693 (1%)
Strand=Plus/Plus
Query 378 CGTGAAATTCGGTATTAAGTCGTTG-AATATCTCGGAGCTATTGGTAGACGTTCCCGAAT 436
||| || |||||||| || || ||| || ||||||||||||||||| ||| |||||||||
Sbjct 513 CGTTAAGTTCGGTATCAAATCATTGCAA-ATCTCGGAGCTATTGGTGGACATTCCCGAAT 571
Query 437 CAGCCACGGTTGGCTCACTGAAACTAGCGGTATTGGAGGCGGTAACGCAGATTCTCAAGG 496
||||||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||
Sbjct 572 CAGCCACGGTTGGCTCACTGAAACTAGCGGTATTGGACGCAGTAACGCGGATTCTTAAGG 631
Query 497 GTGGATTAAACATTGGAGTGC-TCTTTCAAGGTAAAACCATCGTTGATGACTCCAAAACG 555
|||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| |
Sbjct 632 ATGGATTAAACATTGGAGTGCTTC-TTCGAGGTAAAACCATCGTTGATGACTCCAAAATG 690
Query 556 CTTCTTCAGATTGGGATCCCATACGATGATGACGATGACGAAAACCTCGGTTCTTTGGGA 615
|| |||||||||||||||||| ||||||||||||||||| | |||||| |||| ||||||
Sbjct 691 CTCCTTCAGATTGGGATCCCACACGATGATGACGATGACCAGAACCTCAGTTCATTGGGA 750
Query 616 TTCATGCTAGAACCGCAAAAATCAGAAACAACAACAATAACAACGTTAACCACTGTTTCC 675
|||||||||||||| || |||||||||||||| |||||||||||||||| || ||||| |
Sbjct 751 TTCATGCTAGAACCACAGAAATCAGAAACAACGACAATAACAACGTTAAACAATGTTTAC 810
Query 676 CCGAGAACACGACTTAGACAAAATCA-GGTCCTAGGGTCCGTGGATAGCACTGAGGCAG- 733
|||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| |
Sbjct 811 CCGAGAACACGACTTAGACAAAAT-AGGGTTCTAGGGTCCGTGGATAGCACTGAGG-TGA 868
Query 734 TAGCAGCTAAATCCGTGGTTCCAGTACGTATGAAACCGGCCTGGCAGCCAGAGATGGTTC 793
| |||||||||||||||||||| || || ||||||||||||| |||||||||||| ||||
Sbjct 869 TGGCAGCTAAATCCGTGGTTCCGGTGCGCATGAAACCGGCCTCGCAGCCAGAGATAGTTC 928
Query 794 AACGGAGAATAAGACGGCCATTCACTGTCTCAGAAGTAGAAGCTTTGGTTCAGGCCGTAG 853
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 929 AACGGAGAATCAGACGTCCATTCACTGTCTCAGAAGTAGAAGCTTTAGTTCAGGCCGTAG 988
Query 854 AGAGGCTCGGCACCGGAAGGTGGCGCGACGTGAAGTCTCATGCATTTAACCATG-TAAAT 912
||||||||||||||||||||||||||||||| |||| |||||||||| |||||| | |||
Sbjct 989 AGAGGCTCGGCACCGGAAGGTGGCGCGACGTTAAGTGTCATGCATTTGACCATGCT-AAT 1047
Query 913 CATCGTACCTACGTTGACCTCAAGGATAAATGGAAAACGTTGGTTCACACGGCAAAGATA 972
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 CATCGAACTTACGTTGACCTCAAGGATAAATGGAAAACGTTGGTTCACACGGCAAAGATA 1107
Query 973 TCAGCAAGGCAAAGGAGAGGCGAACCTGTGCCTCAAGACCTTCTTGATAGGGTTTTAGCT 1032
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 TCAGCAAGACAAAGGAGAGGCGAACCTGTGCCTCAAGACCTTCTTGATAGGGTTTTAGCT 1167
Query 1033 GCTCATGCTTTCTGGTCTGACCGGACCGGATGA 1065
||||||||||||||||||||||||||| |||||
Sbjct 1168 GCTCATGCTTTCTGGTCTGACCGGACCAGATGA 1200
Score = 448 bits (242), Expect = 5e-125
Identities = 337/382 (88%), Gaps = 9/382 (2%)
Strand=Plus/Plus
Query 1 ATGGTGGACTGTGGTGTCGATATTTACCAACTTCCTGTTGTTCCTAGGGCATGTAGATCA 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGGACTGTGGTGTCGATGCCTACCAACTTCCTGTTGTTCCTAGGGCATGTAGATCA 60
Query 61 CCCAGAGGACGCAGGCTAAAAATT-ATGAGAAAACAAAGATCGGAGTTCGAGGTTTTAGC 119
||||||||||||| || ||| | | |||| |||||||||||| || ||||||||||||||
Sbjct 61 CCCAGAGGACGCATGC-AAAGACTGATGAAAAAACAAAGATCTGATTTCGAGGTTTTAGC 119
Query 120 CCAAGTGGCTGGAA-GATTCTCAGGTGAGCGTAAAAACCGAATTGTTATCGGCTCGTTGG 178
||||||||||| || | | |||||| ||||| || ||||| ||| ||||||||||||||
Sbjct 120 CCAAGTGGCTGAAAAGCT-CTCAGGCGAGCGCAAGCACCGAGTTGCTATCGGCTCGTTGG 178
Query 179 CTCACGAAACAAAGGAGACGAAGGACGATAATGTCGTCGTCAATAACTTCTTGGAGACAA 238
| || ||||||||||||| ||| ||||| | || || |||||||||||||||||||||
Sbjct 179 CCCATAAAACAAAGGAGACAAAGAACGAT--T-TCATCTTCAATAACTTCTTGGAGACAA 235
Query 239 TGGAAGTTGAGGTTAAGCCGCAACCTGGTCTGGAGAA-CCTTTCTCAGGTGTTATTGTCT 297
||||||||||||||||||| |||| ||||| |||||| |||| |||||||||||||||||
Sbjct 236 TGGAAGTTGAGGTTAAGCCTCAACTTGGTCCGGAGAAACCTT-CTCAGGTGTTATTGTCT 294
Query 298 AAGGACTGGTTAGCTCTTGGCCCTTCCATGCCTAACTCGCCAATCACACAAGAAGAAAAC 357
||||||||| |||||||||| |||||| | ||||||| |||||| |||||||||||||
Sbjct 295 AAGGACTGGCTAGCTCTTGGTCCTTCCGCGTCTAACTCTCCAATCTCACAAGAAGAAAAG 354
Query 358 TTTGATTCACGTTCCAAGATCG 379
|||||||||| |||||||||||
Sbjct 355 TTTGATTCACATTCCAAGATCG 376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39647833680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5