BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53800.1
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485774 jgi|Araly1|485774|fgenesh2_kg.5__1766__AT3G53800.1 1757 0.0
> Ahg485774 jgi|Araly1|485774|fgenesh2_kg.5__1766__AT3G53800.1
Length=1118
Score = 1757 bits (951), Expect = 0.0
Identities = 1056/1108 (95%), Gaps = 2/1108 (0%)
Strand=Plus/Plus
Query 71 AAGAAGCGTAAATGGCGAACAATGGACCTAACTGGGACGGATTACTCAAATGGAGCCTCT 130
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AAGAAGCGTAAATGGCGAACAATGGACCTAACTGGGACGGATTGCTCAAATGGAGCCTCT 60
Query 131 CACATTCCGATGGAGCTTCCTCTTCTAGCCGTATAAGTGAGGAAGATCGACAATGGTTTG 190
| |||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 61 CCCATTCCGATGGATCTTCTTCTTCTAGCCGTATTAGTGAGGAAGATCGACAATGGTTTA 120
Query 191 TGGAAGCTATGCAAGCACATACAATCGATTCAATCTCTCGTATGAAAGTAATATCTCAAA 250
| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 121 TAGAAGCTATGCAAGCACATACAATCGATTCAATTTCGCGTATGAAAGTGATATCTCAAA 180
Query 251 TCATGAAGATGCCTGAACAAGTCTTGGAGGCTCAAGGAGTTACACCTGATGATCTTGAAG 310
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 TCATGAAGATGCCTGAACAAGTCTTGGAGGCTCAAGGAGTTACACCTGACGATCTTGAAG 240
Query 311 GAATGTTGGCTGAGCTGCAGGAACACGTCGAGTCGATAGATTTGGCCAATGATCTTCACT 370
||||||||| |||||||||||||||||| ||||| || ||||||||||||||||| ||||
Sbjct 241 GAATGTTGGATGAGCTGCAGGAACACGTTGAGTCAATCGATTTGGCCAATGATCTACACT 300
Query 371 CCATTGGAGGTTTGGTTCCTCTCCTTAGCTATCTCAAGAACTCTAATGCGAAAATTCGAG 430
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 301 CCATTGGAGGTTTGGTTCCTCTCCTTAGCTATCTCATGAACTCTAATGCGAAGATTCGAG 360
Query 431 CAAAGTCTGCCGATGTTTTGACTACGGTTGTCCAAAACAATCCAAGAAGCCAGCAACTTG 490
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 CAAAGTCTGCCGATGTTTTGACCACGGTTGTCCAAAACAATCCAAGAAGCCAGCAACTTG 420
Query 491 TTATGGAAGCAAATGGGTTCGAACCATTATTAACTAACTTTATTGCTGATCCTGACATTA 550
|||||||||||||||||||||| |||||||| || ||||||||||||||||| |||||||
Sbjct 421 TTATGGAAGCAAATGGGTTCGAGCCATTATTTACCAACTTTATTGCTGATCCCGACATTA 480
Query 551 GAGTCCGGACCAAGGCACTCGGGGCTATATCTTCTCTTATCCGTAACAACCAACCCGGGA 610
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 481 GAGTCCGGACCAAGGCACTCGGTGCTATATCTTCTCTTATCCGTAACAACCAACACGGGA 540
Query 611 TTACAGCATTCCGTCTGGCAAATGGTTATGCTGGCCTGCGAGACGCTTTGGTCTCTGATA 670
| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 541 TGACAGCATTCCGTCTGGCAAATGGTTACGCTGGTTTGCGAGACGCTTTGGTCTCTGATA 600
Query 671 CCGTTAGATTCCAAAGAAAAGCGTTGAACTTGCTTCACTATCTTCTCCAAGAAAGCAACT 730
|||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct 601 CCGTTAGATTCCAATGAAAAGCCTTGAACTTGATTCACTATCTCCTCCAAGAAAGCAACT 660
Query 731 CAGACTGTAAAATCGTTAGAGATCTTGGATTCCCTCGCATAATGATCCACCTAGCATCCA 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CAGACTGTAAAATCGTTAGAGATCTTGGATTCCCTCGCATAATGATCCACCTAGCATCCA 720
Query 791 ACCAAGATTTTGAAGTTCGGGAATTCGCTCTTCGTGGTCTCCTAGAGCTTGCCCGTGAAG 850
|||||||||||||||| || |||||||| |||||||||||||||||||| ||||||||||
Sbjct 721 ACCAAGATTTTGAAGTCCGAGAATTCGCCCTTCGTGGTCTCCTAGAGCTCGCCCGTGAAG 780
Query 851 AATCTG-TGAGAAACCTTGATAGAGGGGATGTGAATCTAAGACAGCTTCTTGAGGAGAGA 909
|||||| | ||||||||||| |||| |||||||||||||||||| |||||||||||||||
Sbjct 781 AATCTGAT-AGAAACCTTGACAGAGCGGATGTGAATCTAAGACAACTTCTTGAGGAGAGA 839
Query 910 ACAAGACGAATAATTGTGATGTCGGACGAAGATCTTTGTGCAGCTAGAGAAGAAAGACAG 969
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 840 ACAAGAAGAATAATTGTGATGTCGGACGAAGACCTTTGTGCAGCTAGAGAAGAAAGACAG 899
Query 970 CTAGTGGATAGTCTTTGGACCGTGTGTTATGATGAACCGTCCCTTCTAAGAGAAAGAGGT 1029
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 900 CTAGTGGATAGTCTTTGGACCGTGTGCTATGATGAACCGTCCCATCTAAGAGAAAGAGGC 959
Query 1030 CTGGTCTACCTCCCTTCTGACGACGAGCTGGCTCCTGATGTGGTTAGGGACCGCTTTGAA 1089
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 960 CTGGTTTACCTCCCTTCTGATGACGAGCTGGCTCCTGATGTGGTAAGGGACCGCTTTGAA 1019
Query 1090 CCTCCTCTAAGGGCTTGGGCTGCAAGACGACATGATGAAACGAGTGAATCCCCGGTTCCA 1149
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1020 CCTCCTCTAAGGGCTTGGGCTGCAAGACGACATGATGAAACGAGTGAATCACCAGTTCCA 1079
Query 1150 CTTCTTCTTGGTCCTGCACCGTGATCTC 1177
||||||||||||||||||||||||||||
Sbjct 1080 CTTCTTCTTGGTCCTGCACCGTGATCTC 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50360373357
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5