BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53810.1
Length=2243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485775 jgi|Araly1|485775|fgenesh2_kg.5__1767__AT3G53810.1 3308 0.0
Ahg482773 jgi|Araly1|482773|fgenesh2_kg.4__1833__AT2G37710.1 1249 0.0
Ahg912015 jgi|Araly1|912015|Al_scaffold_0001_2269 854 0.0
> Ahg485775 jgi|Araly1|485775|fgenesh2_kg.5__1767__AT3G53810.1
Length=2186
Score = 3308 bits (1791), Expect = 0.0
Identities = 2070/2203 (94%), Gaps = 25/2203 (1%)
Strand=Plus/Plus
Query 49 ATGTTCGTCAAGCTCAAGCTCATCTTCTTC-T--TCTTCCTACTCTGTCAAATTATGATT 105
|||||| |||||||||||||| |||||||| | ||||||| |||||||||||| |||
Sbjct 1 ATGTTCATCAAGCTCAAGCTCGTCTTCTTCTTCATCTTCCTTCTCTGTCAAATTCTGAGA 60
Query 106 TCTTCCTCTCAAAATCTCAACTTCACCTACAATGGTTTCCATCCTCCATTAACAGATATC 165
||||| ||||||| ||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 61 TCTTCTTCTCAAACTCTCAACTTCACCTACAATGGCTTCCATCCTCCATTAAAAGATATC 120
Query 166 TCACTCCAAGGTCTCGCAACAGTAACACCCAATGGTCTCTTGAAGCTTACCAACACATCG 225
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 121 TCACTCCAAGGTCTCGCAACAGTCACACCCAATGGTCTCTTGAAGCTAACCAACACATCG 180
Query 226 GTACAAAAAACCGGTCACGCCTTCTGTACTG-AACGAATCCGGTTCAAAGATTC-CCAAA 283
||||||||||||||||||||||||| ||| | || | ||||||||||||||||| || ||
Sbjct 181 GTACAAAAAACCGGTCACGCCTTCTATACCGAAAAG-ATCCGGTTCAAAGATTCTCC-AA 238
Query 284 ACGGCAACGTATCATCCTTCTCCACAACCTTCGTCTTCGCGATACATTCTCAGATCCCAA 343
||||| |||| || || ||||| || |||||||||||||||||||| |||||||||||||
Sbjct 239 ACGGCTACGTTTCGTCTTTCTCTACCACCTTCGTCTTCGCGATACACTCTCAGATCCCAA 298
Query 344 CACTAAGCGGCCATGGAATCGCCTTCGTTGTAGCTCCAACGCTAGGTCTTCCTTTTGCAC 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CACTAAGCGGCCATGGAATCGCCTTCGTTGTAGCTCCAACGCTAGGTCTTCCTTTTGCAC 358
Query 404 TTCCTAGTCAATACATCGGTCTCTTCAACATCTCTAACAATGGTAACGACACGAATCACA 463
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 359 TTCCTAGTCAATACATCGGTCTCTTCAACATCTCCAACAATGGTAACGACACGAATCACA 418
Query 464 TCTTTGCCGTCGAATTCGATACAATCCAGAGTAGCGAGTTTGGAGATCCAAACGATAATC 523
|||| ||||||||||||||||| || ||||| |||||||| |||||||||||||||||||
Sbjct 419 TCTTCGCCGTCGAATTCGATACTATTCAGAGCAGCGAGTTCGGAGATCCAAACGATAATC 478
Query 524 ACGTCGGAATCGATCTCAACGGTTTACGATCGGCGAATTACTCGACGGCGGGATA-TAGG 582
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct 479 ACGTCGGAATCGATATCAATGGTTTACGATCGGCGAATTACTCGACGGCGGGATACT-GG 537
Query 583 GATGATCACGATAAGTTTCAGAATCTGAGTTTGATTAGTCGCAAACGGATCCAAGTTTGG 642
||||||||||| |||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct 538 GATGATCACGACGAGTTTCGGAATCTGAGTTTGATTAGTCGCAAACGGATTCAGGTTTGG 597
Query 643 ATCGATTACGATAATCGTAGTCATCGAATTGATGTCACCGTGGCTCCGTTTGATTCTGAT 702
||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| |||
Sbjct 598 ATCGATTACGATAATCGGAGTCATCGAATCGATGTCACCATGGCTCCGTTTGATTCCGAT 657
Query 703 AAACCTAGAAAACCTCTAGTTTCGTATGTGAGAGATCTTTCTTCGATTCTTCTAGAAGAT 762
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 658 AAACCTAGAAAACCTCTAGTTTCGTATGTGAGAGATCTTTCTTCGATTCTTCTGGAAGAT 717
Query 763 ATGTATGTAGGTTTCTCATCTGCGACTGGTTCAGTTCTCTCGGAGCATTTCTTAGTCGGA 822
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 718 ATGTATGTAGGTTTCTCATCTGCTACTGGTTCAGTTCTCTCGGAGCATTTCGTAGTCGGA 777
Query 823 TGGAGTTTCCGGTTAAACGGAGAAGCTCCGATGCTCTCGTTATCGAAACTCCCGAAGCTT 882
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 778 TGGAGTTTCCGGTTAAACGGAGAAGCTCCGATGCTTTTGTTATCGAAACTCCCGAAGCTT 837
Query 883 CCTCGATTTGAGCCTAGAAGAATCTCTGAATTCTACAAAATCGGTATGCCTTTGATTTCA 942
|||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CCTCGATTCGAGCCGAGACGAATCTCTGAATTCTACAAAATCGGTATGCCTTTGATTTCA 897
Query 943 CTATCTCTGATCTTCTCTATCATCTTCCTCGCTTTCTACATCGTGAGGAGGAAGAAGAAG 1002
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 898 CTATCTCTGATCTTCTCTATTATCTTCCTCGCTTTCTATATCGTGAGGAGGAAGAAGAAG 957
Query 1003 TACGAGGAAGAGCTTGATGATTGGGAAACAGAGTTTGGGAAGAATCGATTCAGATTCAAG 1062
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 958 TACGAGGAAGAGCTTGATGATTGGGAAACAGAGTTTGGGAAGAATCGATTTAGATTCAAG 1017
Query 1063 GAGCTCTATCACGCGACCAAAGGTTTTAAGGAGAAGGATCTTCTCGGCTCCGGTGGATTT 1122
||||| ||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1018 GAGCTTTATCATGCGACCAAAGGTTTTAAGGAGAAGGATCTTCTCGGATCTGGTGGATTT 1077
Query 1123 GGGAGAGTTTACAGAGGCATTTTACCAACGACGAAGCTTGAAGTCGCTGTGAAGAGAGTC 1182
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1078 GGGAGAGTTTACAGAGGGATTTTACCGTCGACGAAGCTTGAAGTCGCTGTGAAGAGAGTC 1137
Query 1183 TCACATGATTCAAAACAAGGTATGAAAGAGTTTGTGGCGGAGATTGTGAGTATTGGTAGG 1242
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1138 TCACATGATTCAAAACAAGGGATGAAAGAGTTTGTGGCGGAGATTGTGAGTATTGGTCGG 1197
Query 1243 ATGAGTCACCGGAATTTAGTTCCTCTCTTGGGTTACTGTCGCCGGAGAGGAGAGCTTCTT 1302
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1198 ATGAGTCACCGGAATTTAGTTCCTCTGTTGGGTTATTGTCGCCGGAGAGGAGAGCTTCTT 1257
Query 1303 TTGGTTTACGATTACATGCCTAATGGGAGCTTAGATAAGTATCTTTACAACAATCCGGAG 1362
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1258 TTGGTTTACGATTACATGCCTAATGGGAGCTTAGACAAGTATCTTTACAACAATCCGGAG 1317
Query 1363 ACTACC-TTAGATTGGAAACAAAGATCTACGATTATCAAAGGAGTTGCTTCAGGATTGTT 1421
| || | |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1318 A-TAACATTAGATTGGAAACAAAGATCTAAGATTATCAAAGGAGTTGCTTCAGGATTGTT 1376
Query 1422 CTATCTTCATGAGGAATGGGAACAAGTTGTGATTCACCGTGACGTGAAAGCTAGCAATGT 1481
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1377 CTATCTCCATGAGGAATGGGAACAAGTTGTGATTCACCGCGACGTGAAAGCTAGCAATGT 1436
Query 1482 TCTGTTAGATGCTGATTTCAATGGTAGACTCGGTGATTTTGGGTTGGCTCGGTTGTATGA 1541
| ||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1437 TTTGTTAGACGCTGATTTCAATGGTAGACTCGGAGATTTTGGTTTGGCTCGGTTGTATGA 1496
Query 1542 TCACGGCTCGGATCCTCAGACCACTCACGTTGTTGGAACATTGGGTTACTTAGCACCTGA 1601
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TCACGGGTCGGATCCTCAGACCACTCACGTTGTTGGAACATTGGGTTACTTAGCACCTGA 1556
Query 1602 ACATTCCCGGACTGGACGTGCCACTACCACGACTGATGTCTATGCGTTTGGTGCGTTTCT 1661
||||||||||||||| || ||||| || ||||||| |||||||| ||||||||||||||
Sbjct 1557 ACATTCCCGGACTGGGCGGGCCACGACTGCGACTGACGTCTATGCCTTTGGTGCGTTTCT 1616
Query 1662 TTTAGAAGTTGTTTCCGGTAGACGACCCATCGAGTTCCATAGTGCAAGCGATGATACGTT 1721
| |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||
Sbjct 1617 TCTAGAAGTTGTTTCCGGTAGACGACCCATTGAGATCCATAGCGCAAGCGATGATACATT 1676
Query 1722 CTTGCTTGTGGAATGGGTTTTCAGTTTGTGGCTCAGAGGTAACATAATGGAAGCGAAAGA 1781
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CTTGCTTGTGGAATGGGTTTTTAGTTTGTGGCTCAGAGGTAACATAATGGAAGCGAAAGA 1736
Query 1782 TCCGAAGCTCGGTTCTTCAGGTTATGATCTTGAAGAGGTTGAAATGGTATTGAAACTCGG 1841
|||||| ||||| ||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1737 TCCGAATCTCGGGTCTTCAGGTTATGATCTTGTAGAGGTTGAAATGGTTTTGAAACTCGG 1796
Query 1842 TCTGTTGTGTTCGCATTCAGACCCTCGGGCTAGACCAAGTATGAGGCAGGTCTTACAATA 1901
||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1797 CCTGTTGTGTTCTCATTCAGATCCTCGGGCTAGACCAAGTATGAGGCAGGTGTTACAATA 1856
Query 1902 TCTAAGAGGAGACATGGCACTGCCTGAATTAACGCCCTTGGATTTGTCGGCGGGGAGCGT 1961
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1857 TCTAAGAGGAGACATGGCACTGCCTGAATTAACGCCCTTGGATATGTCGGCGGGGAGCGT 1916
Query 1962 GATGAATCTGGGAGGCCGGGACGGTTTTAGCGGTATTGCAATGACTGATTTTTCCACTGT 2021
||||||| ||||||||| ||||||||||||||||||||||||| |||| || ||| | ||
Sbjct 1917 GATGAATTTGGGAGGCCAGGACGGTTTTAGCGGTATTGCAATGTCTGACTTGTCCTCCGT 1976
Query 2022 GTTTAAAGGGTTTACCGGCGGATCTTCCATTGCTGACTCTCTACTCTCCGGTGGGAGGTG 2081
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1977 GTTTAAAGGGTTTACCGGCGGATCTTCCATCGCTGAGTCTCTACTCTCCGGTGGGAGGTG 2036
Query 2082 ATGTTTGATGTTCCAACTCTAGCAAT-GTTTTATGTTTATAGtttttttAAAAAAGGTTT 2140
|||||||||||||||||||||||| | ||||||||||||||| ||||| ||| |||||
Sbjct 2037 ATGTTTGATGTTCCAACTCTAGCA-TCGTTTTATGTTTATAGCTTTTT-AAA---GGTTT 2091
Query 2141 ACTAATACGGATCATGTACATACATTTTTGCCTTTGTATGGAATATATAATTGAGTTTTT 2200
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2092 ACTAATGCGGATCATGTACATACATTTTTGCCTTTGTATGGAATATATAATTGAGTTTTT 2151
Query 2201 TGTGATATCTTATAAGAATTTATAGAGTATGAAGATTATGATT 2243
|| |||| | | | || ||| | ||||||||||||||||
Sbjct 2152 -GTTATAT-T-A-AC---TT-ATAAAATATGAAGATTATGATT 2186
> Ahg482773 jgi|Araly1|482773|fgenesh2_kg.4__1833__AT2G37710.1
Length=2166
Score = 1249 bits (676), Expect = 0.0
Identities = 1556/1970 (79%), Gaps = 104/1970 (5%)
Strand=Plus/Plus
Query 161 ATATCTCACTCCAAGGTCTCGCAACAGTAACACCCAATGGTCTCTTGAAGCTTACCAACA 220
||||| || ||||||| || | || || |||||||| ||||||||||| || |||||||
Sbjct 114 ATATC-CA-TCCAAGGGATCACCACCGTCACACCCAACGGTCTCTTGAAACTAACCAACA 171
Query 221 C-ATCGGTACAAAAAACCGGTCACGCCTTCTGTACTGAACGAATCCGGTTCAAAGATTC- 278
| | | || || ||||||||||||||||||| ||| ||| ||||||||| ||||||||
Sbjct 172 CGA-CCGTTCAGAAAACCGGTCACGCCTTCTACACTAAACCAATCCGGTTTAAAGATTCT 230
Query 279 CCAAAACGGCAACGTATCATCCTTCTCCACAACCTTCGTCTTCGCGATACATTCTCAGAT 338
|| |||||||| ||| ||||||||||| ||||| ||||||||||| || || ||||||||
Sbjct 231 CC-AAACGGCACCGTTTCATCCTTCTCGACAACTTTCGTCTTCGCTATTCACTCTCAGAT 289
Query 339 CCCAACACTAAGCGGCCATGGAATCGCCTTCGTTGTAGCTCC-AACGCTAGGTCTTCCTT 397
| | | || ||||||||||| ||||| || || || ||||| ||||| | |||||||||
Sbjct 290 CGCGATTCTCAGCGGCCATGGTATCGCTTTTGTCGTCGCTCCTAACGC-AAGTCTTCCTT 348
Query 398 TTGC-ACTTCCTAGTCAATACATCGGTCTCTTCAACATCTCTAACAATGGTAACGACACG 456
|| || || || |||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 349 ACGCAAC-GCCAAGCCAATACATAGGTCTCTTCAACATCTCAAACAACGGTAATGACACA 407
Query 457 AATCACATCTTTGCCGTCGAATTCGATACAATCCAGAGTAGC-GAGTTTGGA-GATCCAA 514
||||| ||||||| || ||||| ||||| ||| ||||| | ||| || | ||| |||
Sbjct 408 AATCATGTCTTTGCTGTTGAATTAGATACGATCTTGAGTA-CAGAG-TTCAATGATACAA 465
Query 515 ACGATAATCACGTCGGAATCGATCTCAACGGTTT-ACGATC-G-GCGAA-TTACTCGACG 570
|||||||||| |||||||||||| |||| |||| | | || | || || || ||| |
Sbjct 466 ACGATAATCATGTCGGAATCGATATCAATAGTTTGAAG-TCTGTGCAAAGTT-TTCG--G 521
Query 571 GC-GGGATATAGGGATGATCACGATAAGTTTC-AGAATCTGAGTTTGATTAGTCGCAAAC 628
|| ||| ||| |||| || | | || ||| ||||||||| | |||| ||||| || |
Sbjct 522 GCTGGG-TATTGGGACGAGAAAAACCAG-TTCAAGAATCTGACTCTGATCAGTCGTAAGC 579
Query 629 GGATCCAAGTTTGGATCGATTACGATAATCGTAGTC-A-TCGAATTGATGTCACCG-TGG 685
||| || || ||| |||||||||| ||||| | | | ||| ||||| | || |||
Sbjct 580 CGATGCAGGTCTGGGTCGATTACGACGCTCGTA--CAACTAAAATCGATGTGA-CGATGG 636
Query 686 CTCCGTTTGATTCTGATAAACCTAGAAA-ACCTCTAGTTTCGTATGTGAGAGATCTTTCT 744
|||||||| | |||||||||| ||| ||| || |||||| ||| ||||||||||||
Sbjct 637 CTCCGTTTAACGAGGATAAACCTA-AAAGACCGCTTGTTTCGGCTGTCAGAGATCTTTCT 695
Query 745 TCGATTCTTCTAGAAGATATGTATGTAGGTTTCTCATCTGCGACTGGTTCAGTTCTCTCG 804
||| ||||||| ||||||||||||| |||||||| |||||||| || || ||||| |||
Sbjct 696 TCGGTTCTTCTCCAAGATATGTATGTGGGTTTCTCCTCTGCGACAGGCTCTGTTCTGTCG 755
Query 805 GAGCATT-TCTTAGTCGGATGGAGTTTCCGGTTAAACGGAGAA-GCT-C-CGA-TGCTCT 859
|| |||| | || |||| ||||||||| |||| ||| || || ||| | | | || ||
Sbjct 756 GAACATTATGTT-CTCGGGTGGAGTTTCGGGTTGAAC-GAAAAGGCTCCACCATTG-GCT 812
Query 860 CGTTATCGAAACTCCCGAAGCTTCCTCGATTTGAGCCT-AGAAGAATCTCTGAATTCTAC 918
||||||| |||||||||||||||| | || |||||| || ||||||||||| ||||||
Sbjct 813 --TTATCGAGACTCCCGAAGCTTCCTAGGTTCGAGCCTAAG-AGAATCTCTGAGTTCTAC 869
Query 919 AAAATCGGTATGCCTTTGATTTCACTATCTCTGATCTTCTC-TATCATCTTCCTCGCTTT 977
|| ||||| ||||| |||||||| || | | |||| ||||| | | |||||||||| |||
Sbjct 870 AAGATCGGGATGCCGTTGATTTCTCTGTTTTTGATTTTCTCGT-TTATCTTCCTCG-TTT 927
Query 978 -CTACATCGTGAGGAGGAAGAAGAAGTACGAGGAAGAGCTTGATGATTGGGAAACAGAGT 1036
||||| |||||||||| || ||| | || ||| ||||| || |||||||||| |||||
Sbjct 928 GTTACATTGTGAGGAGGAGGAGGAAATTCGCGGAGGAGCTCGAGGATTGGGAAAAAGAGT 987
Query 1037 TTGGGAAGAATCGATTCAGATTCAAGGAGCTCTATC-ACGCGACCAAAGGTTTTAAGGAG 1095
||||||||||||||||||| |||||||| | || | ||||||||||||| |||||||||
Sbjct 988 TTGGGAAGAATCGATTCAGGTTCAAGGATTTGTA-CTACGCGACCAAAGGGTTTAAGGAG 1046
Query 1096 AA-GGATCTTCTCGGCTCCGGTGGATTTGGGAGAGTTTACAGAGGCATTTTACCAAC-G- 1152
|| ||| ||||| || | ||||| || ||||| ||||||| ||| | | || | |
Sbjct 1047 AAGGGA-CTTCTTGGAACTGGTGGGTTCGGGAGTGTTTACAAAGGTGTGATGCC--CGGT 1103
Query 1153 ACGAAGCTTGAAG-TCGCTGTGAAGAGAGTCTCACATGATTCAAAACAAGGTATGAAAGA 1211
|||||| ||| || |||||||||| |||||||| || || || |||||| ||||||||
Sbjct 1104 ACGAAG-TTGGAGATCGCTGTGAAAAGAGTCTCGCACGAGTCTCGACAAGGGATGAAAGA 1162
Query 1212 GTTTGTGGCGGAGATTGTGAGTATTGGTAGGATGAGTCACCGGAATTTAGTTCCTCTCTT 1271
|||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| ||
Sbjct 1163 GTTTGTGGCGGAGATTGTGAGTATTGGTCGGATGAGTCATCGGAATTTAGTCCCTCTTTT 1222
Query 1272 GGGTTACTGTCGCCGGAGAGGAGAGCTTCTTTTGGTTTACGATTACATGCCTAATGGGAG 1331
|||||| ||||| ||||||| ||||||||| |||| || ||||||||||| ||||| ||
Sbjct 1223 GGGTTATTGTCGTAGGAGAGGTGAGCTTCTTCTGGTGTATGATTACATGCCCAATGGAAG 1282
Query 1332 CTTAGATAAGTATCTT-TACAACAATCCGGAGACTA-C-CTTAGATTGGAAACAAAG-AT 1387
|||||| ||||| ||| ||||||| ||||||| || | |||| |||||||||| || ||
Sbjct 1283 CTTAGACAAGTA-CTTGTACAACACTCCGGAGG-TAACACTTA-ATTGGAAACAGAGGAT 1339
Query 1388 CTACGATTAT-CAAAGGAGTTGCTTCAGGATTGTTCTATCTTCATGAGGAATGGGAACAA 1446
|| | |||| | | || ||||| || || || ||||| ||||| |||||||||||||||
Sbjct 1340 -TAAGGTTATTCTA-GGCGTTGCCTCTGGCTTATTCTACCTTCACGAGGAATGGGAACAA 1397
Query 1447 GTTGTGATTCACCGTGACGTGAAAGCTAGCAATGTTCT-GTTAGATGCTGATTTCAATGG 1505
|| ||||||||||| || || ||||| || || || || |||||||| || |||| ||
Sbjct 1398 GTGGTGATTCACCGGGATGTCAAAGCCAGTAACGT-CTTGTTAGATGGAGAGCTCAACGG 1456
Query 1506 TAGACTCGGTGATTTTGGGTTGGCTCGGTTGTATGATCACGGCTCGGATCCTCAGACCAC 1565
|||||||| ||||| || |||||||| |||||||||||||| |||||||||||||||||
Sbjct 1457 GAGACTCGGGGATTTCGGTTTGGCTCGTTTGTATGATCACGGGTCGGATCCTCAGACCAC 1516
Query 1566 TCACGTTGTTGGAACATTGGGTTACTTAGCACCTGAACATTCCCGGACTGGACGTGCCAC 1625
|||||||||||||||||||| |||||||| |||||||| | ||||| |||||||||||
Sbjct 1517 GCACGTTGTTGGAACATTGGGATACTTAGCTCCTGAACACACTCGGACAGGACGTGCCAC 1576
Query 1626 TACCACGACTGATGTCTATGCGTTTGGTGCGTTTCTTT-TAGAAGT-TGTTTCCGGTAGA 1683
|| | |||||||| | ||| ||||| ||||| ||| | ||||| | | | ||||||
Sbjct 1577 GACTGCTACTGATGTTTTTGCTTTTGGGGCGTT-CTTACTCGAAGTCTCCTGC-GGTAGA 1634
Query 1684 CGACCCATCGAGTTCCAT-AGTGCA-AGCGATGATACGTTCTTGCTTGTGGAATGGGTTT 1741
|| || |||||| |||| | || | | |||||| ||||||||||| ||||| |||||||
Sbjct 1635 CGTCCTATCGAGATCCAGCA-TG-AGACCGATGAGACGTTCTTGCTCGTGGATTGGGTTT 1692
Query 1742 TCAGTTTGTGGCTCA-GAGGTAACATAATGGAAGCGAAAGATCCGAAGCTCGGTTCTTCA 1800
|| | || ||| || | || ||||| ||| || ||||||||||| | ||||| |
Sbjct 1693 TCGGGTTATGGAACAAGGGG-AACATCTTGGCTGCTAAAGATCCGAATATGGGTTCCGAA 1751
Query 1801 GGTTATGATCTTGAAG-AGGTTGAAATGGTATTGAAACTCGGTCTGTTGTGTTCGCATTC 1859
|| |||| ||| |||| |||||||| ||||| || ||||| ||||| || || ||
Sbjct 1752 TGTGATGAA----AAGGAGGTCGAAATGGTTTTGAAGCTAGGTCTCTTGTGCTCTCACTC 1807
Query 1860 AGACCCTCGGGCTAGACCAAGTATGAGGCAGGT-CTTACAATATCTAAGAGGAGACATGG 1918
||||| |||||||||||||||||||| || || || ||| ||||| |||||||| ||
Sbjct 1808 CGACCCACGGGCTAGACCAAGTATGAGACAAGTGCT-ACATTATCTTAGAGGAGA--TG- 1863
Query 1919 CACTG---CCTGAATTAACGCCCTTGGATTTGTCGGCGGGGAGCGTGATGAA-TCTGGGA 1974
|| | || ||||| | || ||||| ||||| |||| || | ||||| | ||||
Sbjct 1864 CAAAGTTACCAGAATTGTCTCCGTTGGACTTGTC--CGGG-AGTGGGATGATGTTTGGG- 1919
Query 1975 GGCCGGGACGGTTTTAGCGGTATT-GCAATGAC-TGATTTTTCCACTGTGTTTAAAGGGT 2032
| | ||||| ||||| | ||| | ||| | | ||| ||| | || || |||||||
Sbjct 1920 GTTCATGACGGATTTAGTGA-ATTAGGGATGTCGT-ATTCCTCCTCCGTATTCAAAGGGT 1977
Query 2033 TTACCGGCGGATCTTCCATTGCTGACTCTCTACTCTCCGGTGGGAGGTGA 2082
||||||| ||||||||||| ||||| |||||||| || || ||||| |||
Sbjct 1978 TTACCGGTGGATCTTCCATCGCTGATTCTCTACTTTCTGGCGGGAGATGA 2027
> Ahg912015 jgi|Araly1|912015|Al_scaffold_0001_2269
Length=825
Score = 854 bits (462), Expect = 0.0
Identities = 506/528 (96%), Gaps = 0/528 (0%)
Strand=Plus/Plus
Query 621 TCGCAAACGGATCCAAGTTTGGATCGATTACGATAATCGTAGTCATCGAATTGATGTCAC 680
|||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 264 TCGCAAACGGATTCAGGTTTGGATCGATTACGATAATCGGAGTCATCGAATCGATGTCAC 323
Query 681 CGTGGCTCCGTTTGATTCTGATAAACCTAGAAAACCTCTAGTTTCGTATGTGAGAGATCT 740
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 324 CATGGCTCCGTTTGATTCCGATAAACCTAGAAAACCTCTAGTTTCGTATGTGAGAGATCT 383
Query 741 TTCTTCGATTCTTCTAGAAGATATGTATGTAGGTTTCTCATCTGCGACTGGTTCAGTTCT 800
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 384 TTCTTCGATTCTTCTGGAAGATATGTATGTAGGTTTCTCATCTGCTACTGGTTCAGTTCT 443
Query 801 CTCGGAGCATTTCTTAGTCGGATGGAGTTTCCGGTTAAACGGAGAAGCTCCGATGCTCTC 860
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 444 CTCGGAGCATTTCGTAGTCGGATGGAGTTTCCGGTTAAACGGAGAAGCTCCGATGCTTTT 503
Query 861 GTTATCGAAACTCCCGAAGCTTCCTCGATTTGAGCCTAGAAGAATCTCTGAATTCTACAA 920
|||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 504 GTTATCGAAACTCCCGAAGCTTCCTCGATTCGAGCCGAGACGAATCTCTGAATTCTACAA 563
Query 921 AATCGGTATGCCTTTGATTTCACTATCTCTGATCTTCTCTATCATCTTCCTCGCTTTCTA 980
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 564 AATCGGTATGCCTTTGATTTCACTATCTCTGATCTTCTCTATTATCTTCCTCGCTTTCTA 623
Query 981 CATCGTGAGGAGGAAGAAGAAGTACGAGGAAGAGCTTGATGATTGGGAAACAGAGTTTGG 1040
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 TATCGTGAGGAGGAAGAAGAAGTACGAGGAAGAGCTTGATGATTGGGAAACAGAGTTTGG 683
Query 1041 GAAGAATCGATTCAGATTCAAGGAGCTCTATCACGCGACCAAAGGTTTTAAGGAGAAGGA 1100
|||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 684 GAAGAATCGATTTAGATTCAAGGAGCTTTATCATGCGACCAAAGGTTTTAAGGAGAAGGA 743
Query 1101 TCTTCTCGGCTCCGGTGGATTTGGGAGAGTTTACAGAGGCATTTTACC 1148
||||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 744 TCTTCTCGGATCTGGTGGATTTGGGAGAGTTTACAGAGGGATTTTACC 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84446073165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5