BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G53820.1 Length=429 Score E Sequences producing significant alignments: (Bits) Value Ahg938293 jgi|Araly1|938293|scaffold_502484.1 671 0.0 > Ahg938293 jgi|Araly1|938293|scaffold_502484.1 Length=473 Score = 671 bits (363), Expect = 0.0 Identities = 409/431 (95%), Gaps = 4/431 (1%) Strand=Plus/Plus Query 1 ATGAATAGAAAATACTTGGATCGTCGATCATATTCATGGTCCGGATCACAAGCAAGACCA 60 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 25 ATGAATAGAAAATACTTGGATCGTCGATCATATTCATGGTCCGGATCGCAAGCAAGACCA 84 Query 61 TACATATGCGAATTTTGCGAGAGAGGTTTTTCCAACGCACAAGCTTTAGGAGGGCACATG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 85 TACATATGCGAATTTTGCGAGAGAGGTTTTTCCAACGCACAAGCTTTAGGAGGGCACATG 144 Query 121 AACATCCACAGAAAAGACAGGGCAAAACTTCGACAAGCGAACCTAAAAGAAGAAGACAGT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 145 AACATCCACAGAAAAGACAGGGCAAAACTTCGACAAGCGAACCTAAAAGAAGAAGATAGT 204 Query 181 GAAGATGCCATTTGCACCACTTCGAGAAATCGGTTTGGGCAAGAGCTTATTGAGTTACCT 240 ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 205 GAAGAAGCCATTTGCACCACTTCGAGAAATCGGTTCGAGCAAGAGCTTATTGAGTTACCT 264 Query 241 TTCTTCGTTGATACGGTCGGTCCaagaagaaaaggagaagatgataaaagcgaaaaag-g 299 |||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||| | Sbjct 265 TTCTTCGTTGATACGGTCGGTCCAAGGAGAAAAGAAGAAGATGATAGAAGC-AAAAACTG 323 Query 300 tttaggagatgaagaaaagaa-aaaTATGAGGATACTTCAAAAGGCTTTATCTCAAAGTG 358 || ||||||||||||| |||| ||| ||||||||||||||||| |||||||||||||||| Sbjct 324 TTCAGGAGATGAAGAAGAGAAGAAA-ATGAGGATACTTCAAAACGCTTTATCTCAAAGTG 382 Query 359 CAGACGTGATAGATCTTGAGCTCCGTCTAGGATTAGATCCTTATaaaaaaaCAACAAGTA 418 |||| ||||||||||||||||||||||| |||||||||||||| | ||| ||||||||| Sbjct 383 CAGAAGTGATAGATCTTGAGCTCCGTCTGGGATTAGATCCTTACAGGAAATCAACAAGTA 442 Query 419 CAAGTACGTAA 429 ||||||||||| Sbjct 443 CAAGTACGTAA 453 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15453013545 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5