BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G53820.1

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938293 jgi|Araly1|938293|scaffold_502484.1                        671    0.0  


> Ahg938293 jgi|Araly1|938293|scaffold_502484.1
Length=473

 Score =  671 bits (363),  Expect = 0.0
 Identities = 409/431 (95%), Gaps = 4/431 (1%)
 Strand=Plus/Plus

Query  1    ATGAATAGAAAATACTTGGATCGTCGATCATATTCATGGTCCGGATCACAAGCAAGACCA  60
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  25   ATGAATAGAAAATACTTGGATCGTCGATCATATTCATGGTCCGGATCGCAAGCAAGACCA  84

Query  61   TACATATGCGAATTTTGCGAGAGAGGTTTTTCCAACGCACAAGCTTTAGGAGGGCACATG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  85   TACATATGCGAATTTTGCGAGAGAGGTTTTTCCAACGCACAAGCTTTAGGAGGGCACATG  144

Query  121  AACATCCACAGAAAAGACAGGGCAAAACTTCGACAAGCGAACCTAAAAGAAGAAGACAGT  180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  145  AACATCCACAGAAAAGACAGGGCAAAACTTCGACAAGCGAACCTAAAAGAAGAAGATAGT  204

Query  181  GAAGATGCCATTTGCACCACTTCGAGAAATCGGTTTGGGCAAGAGCTTATTGAGTTACCT  240
            ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct  205  GAAGAAGCCATTTGCACCACTTCGAGAAATCGGTTCGAGCAAGAGCTTATTGAGTTACCT  264

Query  241  TTCTTCGTTGATACGGTCGGTCCaagaagaaaaggagaagatgataaaagcgaaaaag-g  299
            |||||||||||||||||||||||||| ||||||| ||||||||||| |||| |||||  |
Sbjct  265  TTCTTCGTTGATACGGTCGGTCCAAGGAGAAAAGAAGAAGATGATAGAAGC-AAAAACTG  323

Query  300  tttaggagatgaagaaaagaa-aaaTATGAGGATACTTCAAAAGGCTTTATCTCAAAGTG  358
            || ||||||||||||| |||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct  324  TTCAGGAGATGAAGAAGAGAAGAAA-ATGAGGATACTTCAAAACGCTTTATCTCAAAGTG  382

Query  359  CAGACGTGATAGATCTTGAGCTCCGTCTAGGATTAGATCCTTATaaaaaaaCAACAAGTA  418
            |||| ||||||||||||||||||||||| |||||||||||||| |  ||| |||||||||
Sbjct  383  CAGAAGTGATAGATCTTGAGCTCCGTCTGGGATTAGATCCTTACAGGAAATCAACAAGTA  442

Query  419  CAAGTACGTAA  429
            |||||||||||
Sbjct  443  CAAGTACGTAA  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15453013545


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5