BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53850.1
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485778 jgi|Araly1|485778|fgenesh2_kg.5__1770__AT3G53850.1 1112 0.0
> Ahg485778 jgi|Araly1|485778|fgenesh2_kg.5__1770__AT3G53850.1
Length=793
Score = 1112 bits (602), Expect = 0.0
Identities = 751/817 (92%), Gaps = 33/817 (4%)
Strand=Plus/Plus
Query 17 AATGTCAAAGGAGAAACAAGGAAGAAGCTTAGCTTATAATCGAATCTAAGCCGTTTCGGG 76
|||||||||||||||| || ||||||||||||||||| |||||| || ||||||||||||
Sbjct 1 AATGTCAAAGGAGAAAGAACGAAGAAGCTTAGCTTATGATCGAAGCTTAGCCGTTTCGGG 60
Query 77 AAATTCTGTTTGTAGGTGACAAAATCCTCTTATAGGGTT-ATTCTTAGCTATGAATTTCC 135
||||||| |||||||||||||||||| |||| || |||| |||| ||||||||||||||
Sbjct 61 AAATTCTATTTGTAGGTGACAAAATCTTCTTCTA-GGTTCCTTCTCAGCTATGAATTTCC 119
Query 136 TCTGCAATTTCtttttttCCCCGCCAAAATTTCTCCTGAAGCAAATGTAGCTTTTTACTT 195
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 120 TCTGCATTTTCTTTTTTTCCCCGCCAAAATTTCTCCTGAAGCAAATGTAGC-TTTT--TT 176
Query 196 GCTGAACTAGGGTTTTGTTCGATTTTGTTCCTCTTTCCTCGCTGATTTTGTCGGAATTTC 255
| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 --T---C----------TTCGATTTTGTTCCTCTTTCCTCGCTGATTTTGTCGGAATTTC 221
Query 256 TGGGTTTGG--GAAG--A--G--AAATTGGAGTCGTTATTGATTGAAATGAAGAAGCTTT 307
||||||||| ||| | | ||||||||| | || |||||| | |||||||||||||
Sbjct 222 TGGGTTTGGTAAAAGAAATTGCCAAATTGGAGCCATTGTTGATTCACATGAAGAAGCTTT 281
Query 308 TAGGAGGTCCGGGAACTGTGTGTGGTCTGTTACTGAGAATCGGACAATGTGCTTCAGCTG 367
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TCGGAGGTCCCGGAACTGTGTGTGGTCTGTTACTGAGAATCGGACAATGTGCTTCAGCTG 341
Query 368 CTGCTTCAATCGGCGTTATGGTCTCTGCTAAAGAGTTCTCTGTTCACACTGCTTTTTGCT 427
| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 342 CGGCTTCTATCGGCGTTATGGTCTCTGCCAAGGAGTTCTCTGTTCACACTGCTTTTTGCT 401
Query 428 ACTTGATTGCGTCAATGGGTCTTCAATTGTTGTGGAGCTTTGGGCTAGCATGTCTTGATG 487
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 402 ACTTGATTGCATCAATGGGTCTTCAATTGTTGTGGAGCTTTGGGCTAGCTTGTCTTGATG 461
Query 488 TTTATGCTCTCAGGGGAAAGAAAGATCTCCAAAACCCTATCTTGGTTAGCTTATTCGTCG 547
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 TTTATGCTCTCAGGGGCAAGAAAGATCTCCAAAACCCTATCTTGGTTAGCTTATTCGTCG 521
Query 548 TTGGTGATTGGGTGACGGCAATGTTATCTCTTGCAGCTGCATGTTCATCAGCAGGAGTTG 607
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 TTGGTGATTGGGTGACTGCAATGTTATCTCTTGCAGCTGCATGTTCATCAGCAGGAGTTG 581
Query 608 TAGTCTTGTATGAAAAAGATATCAAGTATTGCAATACTCAAAGCCAATATCCATGTCTTA 667
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 TTGTCTTGTATGAAAAAGATATCAAGTATTGCAATACTCAAAGCCAATATCCATGTCTTA 641
Query 668 GGTATGAAGTAGCTGTAGCGCTTTCTTTCGTCACTTGGATCCAGATTGCTGTTTCTTCTC 727
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 642 GGTATGAAGTAGCTGTAGCGCTTTCGTTCGTCACTTGGATTCAGATCGCTGTTTCTTCTC 701
Query 728 ATGTCACATTTTGGATCTTAGCCTCGGTTTAGTTAGTTTCGCAAAGAACTCCCAACTTTT 787
|||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||
Sbjct 702 ATGTCACATTTTGGATCTTAGCCTCGGTTTAGTT--T--CGCAAAGAAA-CCCAACTTTT 756
Query 788 TCTTCTTCTTGGAATGTTGAGACATCTTTGTAGCTTT 824
||||||||||||||||||||||||||| |||||||||
Sbjct 757 TCTTCTTCTTGGAATGTTGAGACATCTCTGTAGCTTT 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32976323205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5