BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53860.1
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898320 jgi|Araly1|898320|Al_scaffold_0005_2286 1072 0.0
Ahg482086 jgi|Araly1|482086|fgenesh2_kg.4__1146__AT2G31600.1 544 7e-154
Ahg470597 jgi|Araly1|470597|fgenesh2_kg.1__551__AT1G05860.1 364 6e-100
> Ahg898320 jgi|Araly1|898320|Al_scaffold_0005_2286
Length=873
Score = 1072 bits (580), Expect = 0.0
Identities = 786/879 (89%), Gaps = 39/879 (4%)
Strand=Plus/Plus
Query 21 ATGGCGTCAGCTGCCAAGAACACTGAGCAAAACCCTTTCTCCTTGAAACCCCCAAGACCT 80
|||||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||| |||
Sbjct 1 ATGGCGTCAGCTCCCAAGAACATTGAGCAAAAGCCTTTCTCCTTAAAACCCCCAAGGCCT 60
Query 81 CCGTCTTCCTCCAACGCTGCATCTTCCACCGCT-GTGGCTTCCACTTCAGTTGAACCCCA 139
|||||||||||| ||||| |||||| ||| | || |||||||||||||| ||||||||
Sbjct 61 CCGTCTTCCTCCGGCGCTGTATCTTCAACC-TTCGTTGCTTCCACTTCAGTAGAACCCCA 119
Query 140 AATTCGGAACCCTAAACCTAGCACAAACGTCTTACCATCGACCTCGAATTCACCGATTAC 199
|||| |||||||||| ||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 120 AATTAGGAACCCTAACCCTAGCACAAACGCCTTACCATCGACCTCGAATTCACCAATTAC 179
Query 200 GATGTTACAAGAAGATGAAATCCTCGCAAGCTCTAGTCACCTCACACGCCCAGAGCTTC- 258
||||| ||||||||||||| | |||||| |||| ||||||||||||| |||||||| ||
Sbjct 180 GATGTCACAAGAAGATGAATTACTCGCACGCTCCAGTCACCTCACACCCCCAGAGC-TCT 238
Query 259 TCCGACGCCGAGCAGACAACCTAAAGCAGCTGGCCAAGTGTTATAAAAACCATTATTGGG 318
| |||||||||||| |||| || |||||||| |||||||| |||||||||||||||||||
Sbjct 239 TACGACGCCGAGCACACAATCTTAAGCAGCTCGCCAAGTGCTATAAAAACCATTATTGGG 298
Query 319 CTTTAATGGAGGATCTCAAGGCGCAACACAGGGATTATTGGTGTAAGTATGGGGTTAGTC 378
|||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||
Sbjct 299 CTTTAATGGAGGATCTCAAGACGCAACACAGGGATTATTGGTGCAAGTATGGGATTAGTC 358
Query 379 AGTTTAAAGACGAACAAAATCAATCGAATAAGAGACGGAGGC-T--T---------G--A 424
|||| |||||| |||| ||||||||||||||||||||||||| | | | |
Sbjct 359 AGTTCAAAGACCAACAGAATCAATCGAATAAGAGACGGAGGCTTGGTCCAGAAGGAGAAA 418
Query 425 T-----CC--AGAAGGTAGTGGAGATAAGGGTAATGATGGT-G--A---TCA---GTATG 468
| || ||||||||||||||||||| |||||||||| | | | | |||||
Sbjct 419 TCGGAGCCGTTGAAGGTAGTGGAGATAAGGCTAATGATGGTGGTAATGGTGATGTGTATG 478
Query 469 CAAACAGCAATTCCGGGTTCTGTATGTATGGATGCAAAGCTAAAGCTATGGCGCTTACCA 528
|||||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CAAACAACAA-T--GGGAGCTGTATGTATGGATGCAAAGCTAAAGCTATGGCGCTTACCA 535
Query 529 AATACTGTCAATTGCATATTCTCAAGGATAGTAAGCAGAAGCTCTACACTGGTTGCACAA 588
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 536 AATACTGTCAACTGCATATTCTCAAAGATAGTAAGCAGAAGCTCTACACTGGTTGCACAA 595
Query 589 ACGTCATCAACAGATCTCCAGCAGGACCATTACTTTGTGGAAAACCAACACTAGCATCGA 648
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 596 ACGTCATCAACAGATCTCCAGCAGGACCATTACTTTGTGGAAAACCAACACTTGCATCGA 655
Query 649 CTGTTCCTGTACTGTGTAACGTGCACTACCAGAAAGCACAGAAGAATGTTGCCAAAGCTT 708
||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||
Sbjct 656 CTGTTCCTGTACTGTGTAATGTGCACTACCAGAGAGCACAAAAGAATGTTGCCAAAGCTT 715
Query 709 TAAAAGATGCTGGTCACAATGTCTCTTCAACAAGCAAGCCTCCCCCAAAGCTCCATG-TT 767
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 716 TAAAAGATGCTGGTCATAATGTCTCTTCAACAAGCAAGCCTCCCCCAAAGCTCCATGCTT 775
Query 768 ATAGTAGCTGCATTTGTGCATCACATTCAAGCACAAAGAAAAAATCCACATAAGGAGGGT 827
|||||||||||||||||||||||||||||||||| |||||||| |||| ||||| |||
Sbjct 776 -TAGTAGCTGCATTTGTGCATCACATTCAAGCACAGAGAAAAAAGGCACACAAGGATGGT 834
Query 828 AAACTTAAAAGTGTAGTAAAGGAAGAAATGACAAGCTGA 866
||||||||||| |||||||| ||||||||||||||||||
Sbjct 835 AAACTTAAAAGCGTAGTAAAAGAAGAAATGACAAGCTGA 873
> Ahg482086 jgi|Araly1|482086|fgenesh2_kg.4__1146__AT2G31600.1
Length=1220
Score = 544 bits (294), Expect = 7e-154
Identities = 380/421 (90%), Gaps = 8/421 (2%)
Strand=Plus/Plus
Query 457 GTGATCAGTATGCAAACAGCAATTCCGGG-TTCTGTATGTATGGATGCAAAGCTAAAGCT 515
||||||||||||| || || ||| ||| | |||||||||||||||||||||||||||
Sbjct 515 GTGATCAGTATGCGAATAGTAATAGTGGGAGT-TGTATGTATGGATGCAAAGCTAAAGCT 573
Query 516 ATGGCGCTTACCAAATACTGTCAATTGCATATTCTCAAGGATAGTAAGCAGAAGCTCTAC 575
||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 574 ATGGCGCTTACGAAATACTGTCAGCTGCATATTCTTAAGGATAGTAAGCAGAAGCTCTAC 633
Query 576 ACTGGTTGCACAAACGTCA-TCAACAGATCTCCAGCAGGACCATTACTTTGTGGAAAACC 634
|||||||| |||||||||| | ||| || |||||||||||||||||||||||||||||||
Sbjct 634 ACTGGTTGTACAAACGTCATTAAAC-GAGCTCCAGCAGGACCATTACTTTGTGGAAAACC 692
Query 635 AACACTAGCATCGACTGTTCCTGTACTGTGTAACGTGCACTACCAGAAAGCACAGAAGAA 694
|||||| | ||||||||||||||||| ||||| || |||| ||||||||| || ||| |
Sbjct 693 AACACTTGGGTCGACTGTTCCTGTACTCTGTAATGTACACTTCCAGAAAGCCCAAAAGCA 752
Query 695 TGTTGCCAAAGCTTTAAAAGATGCTGGTCACAATGTCTCTTCAACAAGCAAGCCTCCCCC 754
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 753 TGTTGCTAAAGCTTTAAAGGATGCTGGTCACAATGTCTCTTCAACAAGCAAGCCTCCCCC 812
Query 755 AAAGCTCCATGTTATAGTAGCTGCATTTGTGCATCACATTCAAGCACAAA-GAAAAAATC 813
||||||||||||||||||||||| ||||||||||| ||||||||| ||| |||||||||
Sbjct 813 GAAGCTCCATGTTATAGTAGCTGCGTTTGTGCATCATATTCAAGCA-AAACGAAAAAATC 871
Query 814 CACATAAGGAGGGTAAACTTAAAAGTGTAGTAAAGGAAGAAA-TGACAAGCTGAGTCAAG 872
|||| ||||| |||||||||||||||||||||| ||||||| | |||||||||||||||
Sbjct 872 CACACAAGGATTGTAAACTTAAAAGTGTAGTAAAAGAAGAAAAT-ACAAGCTGAGTCAAG 930
Query 873 C 873
|
Sbjct 931 C 931
Score = 448 bits (242), Expect = 6e-125
Identities = 375/437 (86%), Gaps = 18/437 (4%)
Strand=Plus/Plus
Query 9 CCGGCGACGACAATGGCGTCAGCTGCCAAGAACACTGAGCAAAACCCTTTCTCCTTGAAA 68
||| ||||| |||||||||||||| ||||||||| | |||||||||||||||||| ||||
Sbjct 1 CCGACGACGGCAATGGCGTCAGCTTCCAAGAACATTCAGCAAAACCCTTTCTCCTCGAAA 60
Query 69 CCCCCAAGACCTCCGTCTTCCTCCAACGCTGCATCTTCCACCGCTGTGGCTTCCACTTCA 128
|| ||||| ||||||||||||||| |||||||||| | |||| ||||||||||| |||
Sbjct 61 CCGCCAAGGCCTCCGTCTTCCTCCGGCGCTGCATCTACTTCCGCCGTGGCTTCCACCTCA 120
Query 129 GTTGAACCCCAAATTCGGAA--C--CCT--AA----A--CCTAGCACAAACGTCTTACCA 176
| || |||||||| ||||| | ||| || | |||||||||||||| |||||
Sbjct 121 GCCGAGCCCCAAATACGGAACCCTACCTCAAACCCTAGCCCTAGCACAAACGTTTTACCG 180
Query 177 TCGACCTCGAATTCACCGATTACGATGTTACAAGAAGATGAAATCCTCGCAAGCTCTAGT 236
||||| ||||||| |||||||||||||| |||||||||||||||||||||| || |||
Sbjct 181 TCGACTTCGAATTTACCGATTACGATGTCACAAGAAGATGAAATCCTCGCACTTTCCAGT 240
Query 237 CACCTCACACGCCCAGAGCTTCTCCGA-CGCCGAG-CA-GACAACCTAAAGCAGCTGGCC 293
||||| || ||||| |||||||||| | ||||| | || | ||||||||||||||| |||
Sbjct 241 CACCTAACCCGCCCGGAGCTTCTCC-ATCGCCG-GTCACG-CAACCTAAAGCAGCTCGCC 297
Query 294 AAGTGTTATAAAAACCATTATTGGGCTTTAATGGAGGATCTCAAGGCGCAACACAGGGAT 353
|||||||||| | || ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 298 AAGTGTTATAGAGACAATTATTGGGCTATAATGGAGGATGTCAAGGCGCAACACAGGGAT 357
Query 354 TATTGGTGTAAGTATGGGGTTAGTCAGTTTAAAGACGAACAAAATCAATCGAATAAGAGA 413
|||||||| ||||||||| |||||| ||||||||||||||| || |||||||||||||||
Sbjct 358 TATTGGTGGAAGTATGGGATTAGTCCGTTTAAAGACGAACAGAACCAATCGAATAAGAGA 417
Query 414 CGGAGGCTTGATCCAGA 430
|||||||||| || |||
Sbjct 418 CGGAGGCTTGGTCAAGA 434
> Ahg470597 jgi|Araly1|470597|fgenesh2_kg.1__551__AT1G05860.1
Length=1051
Score = 364 bits (197), Expect = 6e-100
Identities = 558/724 (77%), Gaps = 58/724 (8%)
Strand=Plus/Plus
Query 183 TCGAATTCACCGATTACGAT-GTTACAAGAAGATGAAATCCTCGCAAGCTCTAGTCACCT 241
||||||||||||||| |||| | | || ||| | ||||| | ||| || || ||| |
Sbjct 181 TCGAATTCACCGATTTCGATGGCT-GTGGAGGATCAGATCCTGGGAAGTTCCAGCCACAT 239
Query 242 CACACGCCCAGAGCTTCTCCGACGCCGAGCAG-ACAACCT-AAAGCAGCTGGCCAAG-TG 298
||||||||| ||||||||||||||| || | | | ||||| ||| ||||| | | || ||
Sbjct 240 CACACGCCCGGAGCTTCTCCGACGCAGATC-GCATAACCTGAAA-CAGCTCG-CTAGATG 296
Query 299 TTATAAAAACCATTATTGGGCTTTAATGGAGGATCTCAAGGCGCAACACAGGGATTATTG 358
||| | | ||||||| |||||| |||||||||||||||||||||||||||| ||||| |
Sbjct 297 TTACAGAGACCATTACTGGGCTCTAATGGAGGATCTCAAGGCGCAACACAGATATTATAG 356
Query 359 GTGTAAGTATGGGGTTAGTCAGTTT-AAAGACGA-A--CAAAATCAAT-C--GA-A--TA 408
|| || ||||| ||||||| ||| ||||| || | || | ||| | || | ||
Sbjct 357 CTGGAACTATGGTGTTAGTCC-TTTCAAAGATGAGAATCATCAGCAAAACAAGAGACGTA 415
Query 409 AG--AGACGGAGG--CTTG--ATCCA---GAAGGTAGTGGAGATAAGGGTAATGATGGTG 459
|| ||| ||| || | || | |||||||| ||||| || | ||| ||||| |
Sbjct 416 AGGTAGAAGGACAAACTGGGGATGAAATTGAAGGTAGCGGAGACAATGATAACGATGGCG 475
Query 460 ATCAGTATGCAAACAGCAATTCCGGGTTCTGTATGTA-TGGATGCAAAGCTAAAGCTATG 518
| || || ||| | | || || || ||| |||||||||| |||| || |||
Sbjct 476 TTAAGGCTGGTAACTGTG-T---GGCTTGTG---GTAATGGATGCAAATCTAAGGCCATG 528
Query 519 GCGCT-TACCAAATACTGTCAA-TTGCATATTCTCAAGGATAGTAAGCAGAAGCTCTACA 576
|| || | |||| |||||||| || ||||| |||| ||||| ||||||||||| ||||
Sbjct 529 GCACTCT-CCAATTACTGTCAGCTT-CATATCCTCATGGATAAAAAGCAGAAGCTTTACA 586
Query 577 C-TGGTTGCACAAACGTCATCAACAGATCTCCAG-CAGGACCATTA-CTTTGTGGAAAAC 633
| | ||| || |||||| ||| ||| ||| || || | || || ||| || |||||
Sbjct 587 CGTC-TTGTACTTACGTCAACAAAAGAGCTC-AGTCAAAAGCAATAACTT-GTCCAAAAC 643
Query 634 CAACACTAGCATCGACTGTTCCTG-TACTGTGTAACGTGCACTACCAGAAAGCACAGAAG 692
||||||| |||||||||||||||| | |||||||| ||||||| ||||||||| || |||
Sbjct 644 CAACACTTGCATCGACTGTTCCTGCT-CTGTGTAATGTGCACTTCCAGAAAGCCCAAAAG 702
Query 693 AATGTTGC-CAAAGCTTTAAAAGATGCTGGTCACAATGTCTCTTCAACAAGCAAGCCTCC 751
||||||| | | |||||||| ||||||||||| ||||| |||||| |||||||||||||
Sbjct 703 GATGTTGCTCGA-GCTTTAAAGGATGCTGGTCATAATGTTTCTTCAGCAAGCAAGCCTCC 761
Query 752 CCC-AAAGCTCCATGTTATAGTAGCTGCATTTGTGCATCACATTCAAGCACAAAGAAAAA 810
||| ||| ||||||| |||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 762 CCCGAAA-CTCCATGACATAGTAGCCGCATTTGTGCATCATATTCAAGCAAAAAGAAAAG 820
Query 811 ATCCAC-ATAAGGAGGGTAAACTT-AAAAG-TGTAGTAAAGGAAGAAATGACAAGCTGAG 867
|||||| | ||| |||| ||| || ||||| | ||||||| |||||||| ||||||| |
Sbjct 821 ATCCACGAAAAG-AGGGAAAA-TTGAAAAGCT-TAGTAAAAGAAGAAATTACAAGCTAAA 877
Query 868 TCAA 871
||||
Sbjct 878 TCAA 881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43040773293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5