BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53870.1
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485780 jgi|Araly1|485780|fgenesh2_kg.5__1772__AT3G53870.1 1404 0.0
Ahg482088 jgi|Araly1|482088|fgenesh2_kg.4__1148__AT2G31610.1 1033 0.0
Ahg493615 jgi|Araly1|493615|fgenesh2_kg.7__3048__AT5G35530.1 708 0.0
> Ahg485780 jgi|Araly1|485780|fgenesh2_kg.5__1772__AT3G53870.1
Length=973
Score = 1404 bits (760), Expect = 0.0
Identities = 914/985 (93%), Gaps = 23/985 (2%)
Strand=Plus/Plus
Query 1 GAGATTACGCCGCTCATTTTTAGGGTTTCAGATATAGGCAGATTCTCACATTTGCAAACA 60
||||||||||||| |||||||||||||||||| || |||| ||| ||||||| ||||||
Sbjct 1 GAGATTACGCCGCGCATTTTTAGGGTTTCAGAGATCGGCAAATTTTCACATTCACAAACA 60
Query 61 TGACGACTCAGATCAGCAAGAAGAGAAAGTTTGTAGCGGACGGTGTGTTCTACGCTGAAT 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 TGACGACTCAGATCAGCAAGAAGAGAAAGTTTGTAGCAGACGGTGTGTTCTACGCTGAAT 120
Query 121 TGAATGAGGTTCTTACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGAATGAGGTTCTTACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGG 180
Query 181 TTACTCCTATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGGTG 240
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 TTACTCCAATGAGGACTGAGATTATCATCAGAGCGACACGTACTCAGAATGTTCTCGGTG 240
Query 241 AGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGATTCAAGTTTCCAG 300
||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 241 AGAAGGGAAGGAGAATTAGGGAATTGACATCCCTTGTCCAGAAGAGATTCAAGTTTCCTG 300
Query 301 TTGACAGTGTTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTC 360
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 301 TAGACAGTGTTGAGCTTTATGCCGAGAAGGTCAACAACAGAGGTCTCTGTGCCATTGCTC 360
Query 361 AGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGGGCTTGCTATG 420
| ||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 AAGCTGAATCTCTACGATACAAGCTTCTCGGTGGTCTCGCTGTTCGTAGGGCTTGCTATG 420
Query 421 GTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATGCGAGGTTATCGTGAGTGGAA 480
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 421 GTGTATTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATGCGAGGTCATTGTGAGTGGAA 480
Query 481 AGCTTCGTGCTGCCAGAGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTG 540
|||| ||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 481 AGCTCCGTGCAGCAAGAGCCAAGTCTATGAAGTTCAAGGATGGTTACATGGTGTCATCTG 540
Query 541 GTCAACCAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAGGTG 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 541 GTCAACCAACTAAGGAATACATTGACTCTGCAGTGAGACATGTTTTGCTTAGACAGGGTG 600
Query 601 TGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGCATATCAGGACCAA 660
|||||||||||||||| |||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 601 TGTTGGGAATCAAGGTTAAGGTTATGCTTGATTGGGATCCTAAGGGCAAATCCGGACCAA 660
Query 661 AGACACCATTGCCTGATGTTGTGATCATTCATTCTCCTAAAGAAGAAGAGGCC-ATC-TA 718
||||||||||||||||||||||||||||||||||||||| ||||||||| | | | |
Sbjct 661 TGACACCATTGCCTGATGTTGTGATCATTCATTCTCCTAAGGAAGAAGAGACTTA-CGT- 718
Query 719 TGCACCTGCTCAGGTTGCTGCCCCGGCTGCTCTCGTAGCAGATGCACCACTCACAGCCGT 778
|||||||||||||||||||||||||||||||||| |||| || || ||||| ||||||||
Sbjct 719 TGCACCTGCTCAGGTTGCTGCCCCGGCTGCTCTCATAGCGGAAGCTCCACTTACAGCCGT 778
Query 779 AGATTACCCTGCGATGATCCCAGTCGCCTA-AAAGAATCCTTTGTACTAGTCGATGTGAT 837
||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||| |
Sbjct 779 AGATTACCCAGCGATGATCCCAGTCGCCTAGAAA-AATCCTT-GTACTAGTCGATGT--T 834
Query 838 TTTGTTTTCAACTGTTCTTGCTCTTTTGACAGATTATAGCTTCTCGTATCTTCGAATCAG 897
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TT------CAACTGTTCTTCCTCTTTTGACAGATTATAGCTTCTCGTATCTTCGAATCAG 888
Query 898 ACACGTTTCCTCTGTTCTTATTCGAAAATTATCTCAAGTTTCCATTGTTGAAAA----A- 952
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 889 ACACGTTTCCTCTGTTCTTATTCGAAAATTATCTCAAGTTTCCAATGTTGAAAACTTGAA 948
Query 953 ---GCCCTTTTTAGTTTCATAAATC 974
||||||||||||||||||||||
Sbjct 949 ATAGCCCTTTTTAGTTTCATAAATC 973
> Ahg482088 jgi|Araly1|482088|fgenesh2_kg.4__1148__AT2G31610.1
Length=1045
Score = 1033 bits (559), Expect = 0.0
Identities = 721/799 (90%), Gaps = 12/799 (2%)
Strand=Plus/Plus
Query 19 TTTAGGGTTTCAGATATAGG---CAGATTCTCACATTTGCAAACATGACGACTCAGATCA 75
|||||||||||||| || || | |||| |||||| |||||||| ||||||| ||||
Sbjct 43 TTTAGGGTTTCAGAGATCGGCTTCCGATTTTCACATCCACAAACATGGCGACTCAAATCA 102
Query 76 GCAAGAAGAGAAAGTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTA 135
|||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||| |
Sbjct 103 GCAAGAAGAGAAAGTTTGTAGCAGATGGTGTATTCTACGCTGAATTGAATGAAGTTCTCA 162
Query 136 CAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCTATGAGGA 195
| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 163 CCAGAGAGCTTGCAGAGGATGGTTACTCTGGTGTTGAAGTTAGGGTTACTCCAATGAGGA 222
Query 196 CTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGGTGAGAAGGGGAGGAGAA 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGGTGAGAAGGGGAGGAGAA 282
Query 256 TTAGGGAATTGACTTCCCTTGTTCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGC 315
||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 283 TTAGGGAATTGACATCTCTTGTCCAGAAGAGATTCAAGTTTCCTGTTGACAGTGTTGAGC 342
Query 316 TTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTAC 375
||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 343 TTTATGCTGAAAAGGTTAACAACAGAGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTAC 402
Query 376 GTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGGGCTTGCTATGGTGTGTTGAGGTTTG 435
|||||||||||||||||||||| |||||||| ||||| || |||||||| ||||| ||||
Sbjct 403 GTTACAAGCTTCTTGGTGGTCTTGCTGTTCGCAGGGCCTGTTATGGTGTTTTGAGATTTG 462
Query 436 TTATGGAGAGTGGAGCTAAGGGATGCGAGGTTATCGTGAGTGGAAAGCTTCGTGCTGC-C 494
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 463 TTATGGAGAGTGGAGCTAAGGGATGCGAGGTCATCGTGAGTGGAAAGCTCCGTGCTGCAC 522
Query 495 AGAGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTGGTCAACCAACTAAG 554
| || ||||| |||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 523 -GTGCTAAGTCGATGAAGTTCATGGATGGTTACATGGTTTCATCTGGTCAACCAACTAAG 581
Query 555 GAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAGGTGTGTTGGGAATCAAG 614
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 582 GAATACATTGACTCTGCAGTGAGACATGTTTTGCTTAGACAGGGGGTGTTGGGAATCAAG 641
Query 615 GTGAAGGTTATGCTTGATTGGGACCCTAAGGGCATATCAGGACCAAAGACACCATTGCCT 674
|||||| | ||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 642 GTGAAGATCATGCTTGATTGGGACCCTACGGGCAAATCAGGACCAAAGACACCATTGCCT 701
Query 675 GATGTTGTGATCATTCATTCTCCTAAAGAAGAAGAGGCCATCTAT-GCACCTGCTCAGGT 733
|||||||||||||||||| |||||||||| || | | || | || || |||||||||||
Sbjct 702 GATGTTGTGATCATTCATGCTCCTAAAGATGATGTTGTCAAC-ATCGCGCCTGCTCAGGT 760
Query 734 TGCTGCCCCGGCTGCTCTCGTAGC-AGATGCACCACTCACAGCCGTAGATTACCCTGCGA 792
|||||| || | | |||| || || ||| || ||||||||| ||||||||||||||| ||
Sbjct 761 TGCTGCTCCAGTTACTCTTGT-GCCAGAGGCTCCACTCACAACCGTAGATTACCCTGAGA 819
Query 793 TGAT-CC-C-AGTCGCCTA 808
|||| || | ||| |||||
Sbjct 820 TGATTCCTCCAGTGGCCTA 838
> Ahg493615 jgi|Araly1|493615|fgenesh2_kg.7__3048__AT5G35530.1
Length=960
Score = 708 bits (383), Expect = 0.0
Identities = 634/753 (84%), Gaps = 26/753 (3%)
Strand=Plus/Plus
Query 55 CAAACATGACGACTCAGATCAGCAAGAAGAGAAAGTTTGTAGCGGACGGTGTGTTCTACG 114
|||| ||| |||| ||||||||||||||||||||||| ||||| || |||||||| ||||
Sbjct 92 CAAAAATGGCGACCCAGATCAGCAAGAAGAGAAAGTTCGTAGCCGATGGTGTGTTTTACG 151
Query 115 CTGAATTGAATGAGGTTCTT-ACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAG 173
|||| | ||||||| | || || |||||||| || ||||||||||||||||| ||||||
Sbjct 152 CTGAGCTCAATGAGG-TGTTAACCAGAGAGCTTGCTGAGGATGGTTACTCTGGCGTTGAG 210
Query 174 GTTAGGGTTACTCCTATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTT 233
||| | || ||||||||| | |||||||| ||||| ||||| || |||||||| || |||
Sbjct 211 GTTCGTGTCACTCCTATGCGTACTGAGATCATCATTAGAGCCACTCGTACTCAAAACGTT 270
Query 234 CTCGGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGATTCAAG 293
|||||||||||||| ||||| |||||||||||||| || ||||| || ||||||||| ||
Sbjct 271 CTCGGTGAGAAGGGAAGGAGGATTAGGGAATTGACATCTCTTGTACAAAAGAGATTC-AG 329
Query 294 -TTT-C-CAGTTGACAGTGTTGAGCTTTATGCCGAGAAGGTTAAC-AACAGAGGTCTCTG 349
||| | ||| |||||||||||||||||||| ||||||||| | ||||||||||| ||
Sbjct 330 ATTTCCTCAG--GACAGTGTTGAGCTTTATGCTGAGAAGGTT-GCTAACAGAGGTCTTTG 386
Query 350 TGCCATCGCTCAGGCTGAGTCT-TTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTA 408
||| || ||||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 387 TGCTATTGCTCAGGCTGAGTCTCTT-CGTTACAAGCTTCTTGGTGGTCTTGCTGTTCGTA 445
Query 409 GGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATGCGAGGTTA 468
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 446 GGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAAGGATGCGAAGTCA 505
Query 469 TCGTGAGTGGAAAGCTTCGTGCTGC-CAGAGCCAAGTCTATGAAGTTCAAAGATGGCTAC 527
| ||||||||||| || |||||||| | | || ||||| ||||||||||| ||||| |||
Sbjct 506 TTGTGAGTGGAAAACTCCGTGCTGCAC-GTGCTAAGTCGATGAAGTTCAAGGATGGTTAC 564
Query 528 ATGGTGTCATCTGGTCAACCAACTAAGGAATACATAGACT-CTGCAGTGAGACATGTT-T 585
||||| || || ||||| ||||| || |||||||| || | ||||||| || || ||| |
Sbjct 565 ATGGTTTCCTCAGGTCAGCCAACCAAAGAATACATTGA-TGCTGCAGTTAGGCACGTTCT 623
Query 586 TGCTTAGACAAGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGG 645
| |||||||| |||||| | ||| ||||||||||| | |||||||| |||||||| ||||
Sbjct 624 T-CTTAGACAGGGTGTGCTAGGACTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGG 682
Query 646 GCATA-TCAGGACCAAAGACACCATTGCCTGATGTTGTGATCATTCATTCTCCTAAAGAA 704
||| | | |||||| | ||||||||||||||||||||||||||| ||| | || ||||||
Sbjct 683 GCAAACT-AGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACACCGAAAGAA 741
Query 705 GAAGAGGCC-ATCTAT-GCACCTGCTCAGGTTGCTGCCCCGGCTGCTCTCGTAGCAGATG 762
|| || | | | || |||||||||||||||| ||| || ||||||| ||| | || |
Sbjct 742 GATGATGTTTA-C-ATCGCACCTGCTCAGGTTGTTGCTCCTACTGCTCTTGTACCGGAAG 799
Query 763 CACCACTCACAGCCGTAGATTA-CCCTGCGATG 794
| ||| | ||| || |||||| ||| || |||
Sbjct 800 CCCCATTAACAACCACAGATTATCCC-GCAATG 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36712369071
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5