BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G53870.1 Length=988 Score E Sequences producing significant alignments: (Bits) Value Ahg485780 jgi|Araly1|485780|fgenesh2_kg.5__1772__AT3G53870.1 1404 0.0 Ahg482088 jgi|Araly1|482088|fgenesh2_kg.4__1148__AT2G31610.1 1033 0.0 Ahg493615 jgi|Araly1|493615|fgenesh2_kg.7__3048__AT5G35530.1 708 0.0 > Ahg485780 jgi|Araly1|485780|fgenesh2_kg.5__1772__AT3G53870.1 Length=973 Score = 1404 bits (760), Expect = 0.0 Identities = 914/985 (93%), Gaps = 23/985 (2%) Strand=Plus/Plus Query 1 GAGATTACGCCGCTCATTTTTAGGGTTTCAGATATAGGCAGATTCTCACATTTGCAAACA 60 ||||||||||||| |||||||||||||||||| || |||| ||| ||||||| |||||| Sbjct 1 GAGATTACGCCGCGCATTTTTAGGGTTTCAGAGATCGGCAAATTTTCACATTCACAAACA 60 Query 61 TGACGACTCAGATCAGCAAGAAGAGAAAGTTTGTAGCGGACGGTGTGTTCTACGCTGAAT 120 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 61 TGACGACTCAGATCAGCAAGAAGAGAAAGTTTGTAGCAGACGGTGTGTTCTACGCTGAAT 120 Query 121 TGAATGAGGTTCTTACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGAATGAGGTTCTTACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGG 180 Query 181 TTACTCCTATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGGTG 240 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 181 TTACTCCAATGAGGACTGAGATTATCATCAGAGCGACACGTACTCAGAATGTTCTCGGTG 240 Query 241 AGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGATTCAAGTTTCCAG 300 ||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| | Sbjct 241 AGAAGGGAAGGAGAATTAGGGAATTGACATCCCTTGTCCAGAAGAGATTCAAGTTTCCTG 300 Query 301 TTGACAGTGTTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTC 360 | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 301 TAGACAGTGTTGAGCTTTATGCCGAGAAGGTCAACAACAGAGGTCTCTGTGCCATTGCTC 360 Query 361 AGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGGGCTTGCTATG 420 | ||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 361 AAGCTGAATCTCTACGATACAAGCTTCTCGGTGGTCTCGCTGTTCGTAGGGCTTGCTATG 420 Query 421 GTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATGCGAGGTTATCGTGAGTGGAA 480 |||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 421 GTGTATTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATGCGAGGTCATTGTGAGTGGAA 480 Query 481 AGCTTCGTGCTGCCAGAGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTG 540 |||| ||||| || ||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 481 AGCTCCGTGCAGCAAGAGCCAAGTCTATGAAGTTCAAGGATGGTTACATGGTGTCATCTG 540 Query 541 GTCAACCAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAGGTG 600 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 541 GTCAACCAACTAAGGAATACATTGACTCTGCAGTGAGACATGTTTTGCTTAGACAGGGTG 600 Query 601 TGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGCATATCAGGACCAA 660 |||||||||||||||| |||||||||||||||||||| |||||||||| ||| ||||||| Sbjct 601 TGTTGGGAATCAAGGTTAAGGTTATGCTTGATTGGGATCCTAAGGGCAAATCCGGACCAA 660 Query 661 AGACACCATTGCCTGATGTTGTGATCATTCATTCTCCTAAAGAAGAAGAGGCC-ATC-TA 718 ||||||||||||||||||||||||||||||||||||||| ||||||||| | | | | Sbjct 661 TGACACCATTGCCTGATGTTGTGATCATTCATTCTCCTAAGGAAGAAGAGACTTA-CGT- 718 Query 719 TGCACCTGCTCAGGTTGCTGCCCCGGCTGCTCTCGTAGCAGATGCACCACTCACAGCCGT 778 |||||||||||||||||||||||||||||||||| |||| || || ||||| |||||||| Sbjct 719 TGCACCTGCTCAGGTTGCTGCCCCGGCTGCTCTCATAGCGGAAGCTCCACTTACAGCCGT 778 Query 779 AGATTACCCTGCGATGATCCCAGTCGCCTA-AAAGAATCCTTTGTACTAGTCGATGTGAT 837 ||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||| | Sbjct 779 AGATTACCCAGCGATGATCCCAGTCGCCTAGAAA-AATCCTT-GTACTAGTCGATGT--T 834 Query 838 TTTGTTTTCAACTGTTCTTGCTCTTTTGACAGATTATAGCTTCTCGTATCTTCGAATCAG 897 || ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 835 TT------CAACTGTTCTTCCTCTTTTGACAGATTATAGCTTCTCGTATCTTCGAATCAG 888 Query 898 ACACGTTTCCTCTGTTCTTATTCGAAAATTATCTCAAGTTTCCATTGTTGAAAA----A- 952 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 889 ACACGTTTCCTCTGTTCTTATTCGAAAATTATCTCAAGTTTCCAATGTTGAAAACTTGAA 948 Query 953 ---GCCCTTTTTAGTTTCATAAATC 974 |||||||||||||||||||||| Sbjct 949 ATAGCCCTTTTTAGTTTCATAAATC 973 > Ahg482088 jgi|Araly1|482088|fgenesh2_kg.4__1148__AT2G31610.1 Length=1045 Score = 1033 bits (559), Expect = 0.0 Identities = 721/799 (90%), Gaps = 12/799 (2%) Strand=Plus/Plus Query 19 TTTAGGGTTTCAGATATAGG---CAGATTCTCACATTTGCAAACATGACGACTCAGATCA 75 |||||||||||||| || || | |||| |||||| |||||||| ||||||| |||| Sbjct 43 TTTAGGGTTTCAGAGATCGGCTTCCGATTTTCACATCCACAAACATGGCGACTCAAATCA 102 Query 76 GCAAGAAGAGAAAGTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTA 135 |||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||| | Sbjct 103 GCAAGAAGAGAAAGTTTGTAGCAGATGGTGTATTCTACGCTGAATTGAATGAAGTTCTCA 162 Query 136 CAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCTATGAGGA 195 | |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 163 CCAGAGAGCTTGCAGAGGATGGTTACTCTGGTGTTGAAGTTAGGGTTACTCCAATGAGGA 222 Query 196 CTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGGTGAGAAGGGGAGGAGAA 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 223 CTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGGTGAGAAGGGGAGGAGAA 282 Query 256 TTAGGGAATTGACTTCCCTTGTTCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGC 315 ||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||| Sbjct 283 TTAGGGAATTGACATCTCTTGTCCAGAAGAGATTCAAGTTTCCTGTTGACAGTGTTGAGC 342 Query 316 TTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTAC 375 ||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 343 TTTATGCTGAAAAGGTTAACAACAGAGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTAC 402 Query 376 GTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGGGCTTGCTATGGTGTGTTGAGGTTTG 435 |||||||||||||||||||||| |||||||| ||||| || |||||||| ||||| |||| Sbjct 403 GTTACAAGCTTCTTGGTGGTCTTGCTGTTCGCAGGGCCTGTTATGGTGTTTTGAGATTTG 462 Query 436 TTATGGAGAGTGGAGCTAAGGGATGCGAGGTTATCGTGAGTGGAAAGCTTCGTGCTGC-C 494 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| | Sbjct 463 TTATGGAGAGTGGAGCTAAGGGATGCGAGGTCATCGTGAGTGGAAAGCTCCGTGCTGCAC 522 Query 495 AGAGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTGGTCAACCAACTAAG 554 | || ||||| |||||||||| ||||| |||||||| ||||||||||||||||||||| Sbjct 523 -GTGCTAAGTCGATGAAGTTCATGGATGGTTACATGGTTTCATCTGGTCAACCAACTAAG 581 Query 555 GAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAGGTGTGTTGGGAATCAAG 614 |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 582 GAATACATTGACTCTGCAGTGAGACATGTTTTGCTTAGACAGGGGGTGTTGGGAATCAAG 641 Query 615 GTGAAGGTTATGCTTGATTGGGACCCTAAGGGCATATCAGGACCAAAGACACCATTGCCT 674 |||||| | ||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 642 GTGAAGATCATGCTTGATTGGGACCCTACGGGCAAATCAGGACCAAAGACACCATTGCCT 701 Query 675 GATGTTGTGATCATTCATTCTCCTAAAGAAGAAGAGGCCATCTAT-GCACCTGCTCAGGT 733 |||||||||||||||||| |||||||||| || | | || | || || ||||||||||| Sbjct 702 GATGTTGTGATCATTCATGCTCCTAAAGATGATGTTGTCAAC-ATCGCGCCTGCTCAGGT 760 Query 734 TGCTGCCCCGGCTGCTCTCGTAGC-AGATGCACCACTCACAGCCGTAGATTACCCTGCGA 792 |||||| || | | |||| || || ||| || ||||||||| ||||||||||||||| || Sbjct 761 TGCTGCTCCAGTTACTCTTGT-GCCAGAGGCTCCACTCACAACCGTAGATTACCCTGAGA 819 Query 793 TGAT-CC-C-AGTCGCCTA 808 |||| || | ||| ||||| Sbjct 820 TGATTCCTCCAGTGGCCTA 838 > Ahg493615 jgi|Araly1|493615|fgenesh2_kg.7__3048__AT5G35530.1 Length=960 Score = 708 bits (383), Expect = 0.0 Identities = 634/753 (84%), Gaps = 26/753 (3%) Strand=Plus/Plus Query 55 CAAACATGACGACTCAGATCAGCAAGAAGAGAAAGTTTGTAGCGGACGGTGTGTTCTACG 114 |||| ||| |||| ||||||||||||||||||||||| ||||| || |||||||| |||| Sbjct 92 CAAAAATGGCGACCCAGATCAGCAAGAAGAGAAAGTTCGTAGCCGATGGTGTGTTTTACG 151 Query 115 CTGAATTGAATGAGGTTCTT-ACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAG 173 |||| | ||||||| | || || |||||||| || ||||||||||||||||| |||||| Sbjct 152 CTGAGCTCAATGAGG-TGTTAACCAGAGAGCTTGCTGAGGATGGTTACTCTGGCGTTGAG 210 Query 174 GTTAGGGTTACTCCTATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTT 233 ||| | || ||||||||| | |||||||| ||||| ||||| || |||||||| || ||| Sbjct 211 GTTCGTGTCACTCCTATGCGTACTGAGATCATCATTAGAGCCACTCGTACTCAAAACGTT 270 Query 234 CTCGGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGATTCAAG 293 |||||||||||||| ||||| |||||||||||||| || ||||| || ||||||||| || Sbjct 271 CTCGGTGAGAAGGGAAGGAGGATTAGGGAATTGACATCTCTTGTACAAAAGAGATTC-AG 329 Query 294 -TTT-C-CAGTTGACAGTGTTGAGCTTTATGCCGAGAAGGTTAAC-AACAGAGGTCTCTG 349 ||| | ||| |||||||||||||||||||| ||||||||| | ||||||||||| || Sbjct 330 ATTTCCTCAG--GACAGTGTTGAGCTTTATGCTGAGAAGGTT-GCTAACAGAGGTCTTTG 386 Query 350 TGCCATCGCTCAGGCTGAGTCT-TTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTA 408 ||| || ||||||||||||||| || ||||||||||||||||||||||| |||||||||| Sbjct 387 TGCTATTGCTCAGGCTGAGTCTCTT-CGTTACAAGCTTCTTGGTGGTCTTGCTGTTCGTA 445 Query 409 GGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATGCGAGGTTA 468 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| || | Sbjct 446 GGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAAGGATGCGAAGTCA 505 Query 469 TCGTGAGTGGAAAGCTTCGTGCTGC-CAGAGCCAAGTCTATGAAGTTCAAAGATGGCTAC 527 | ||||||||||| || |||||||| | | || ||||| ||||||||||| ||||| ||| Sbjct 506 TTGTGAGTGGAAAACTCCGTGCTGCAC-GTGCTAAGTCGATGAAGTTCAAGGATGGTTAC 564 Query 528 ATGGTGTCATCTGGTCAACCAACTAAGGAATACATAGACT-CTGCAGTGAGACATGTT-T 585 ||||| || || ||||| ||||| || |||||||| || | ||||||| || || ||| | Sbjct 565 ATGGTTTCCTCAGGTCAGCCAACCAAAGAATACATTGA-TGCTGCAGTTAGGCACGTTCT 623 Query 586 TGCTTAGACAAGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGG 645 | |||||||| |||||| | ||| ||||||||||| | |||||||| |||||||| |||| Sbjct 624 T-CTTAGACAGGGTGTGCTAGGACTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGG 682 Query 646 GCATA-TCAGGACCAAAGACACCATTGCCTGATGTTGTGATCATTCATTCTCCTAAAGAA 704 ||| | | |||||| | ||||||||||||||||||||||||||| ||| | || |||||| Sbjct 683 GCAAACT-AGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACACCGAAAGAA 741 Query 705 GAAGAGGCC-ATCTAT-GCACCTGCTCAGGTTGCTGCCCCGGCTGCTCTCGTAGCAGATG 762 || || | | | || |||||||||||||||| ||| || ||||||| ||| | || | Sbjct 742 GATGATGTTTA-C-ATCGCACCTGCTCAGGTTGTTGCTCCTACTGCTCTTGTACCGGAAG 799 Query 763 CACCACTCACAGCCGTAGATTA-CCCTGCGATG 794 | ||| | ||| || |||||| ||| || ||| Sbjct 800 CCCCATTAACAACCACAGATTATCCC-GCAATG 831 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36712369071 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5