BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53880.1
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485781 jgi|Araly1|485781|fgenesh2_kg.5__1773__AT3G53880.1 1524 0.0
> Ahg485781 jgi|Araly1|485781|fgenesh2_kg.5__1773__AT3G53880.1
Length=1006
Score = 1524 bits (825), Expect = 0.0
Identities = 951/1011 (94%), Gaps = 11/1011 (1%)
Strand=Plus/Plus
Query 17 TTTCGTAAAAGGTTCTCGAGATCTAAGTCTCACTTC-T-AAAGCTCTGACAATGGCGGAC 74
||||||||||||||| | ||||||||||| || || | |||||||||||||||||||||
Sbjct 1 TTTCGTAAAAGGTTCACCAGATCTAAGTCGAAC-TCATAAAAGCTCTGACAATGGCGGAC 59
Query 75 GAAATCGGATTCTTCCAACTCAACACCGGAGCAAAGATCCCATCGGTTGGTCTCGGGACA 134
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 60 GAAATCGGATTCTTCCAACTCAACACCGGAGCAAAGATCCCATCCGTCGGTCTCGGGACA 119
Query 135 TGGCAAGCTGCTCCTGGCGTCGTTGGAGACGCCGTCGCCGCCGCTGTGAAGATTGGATAT 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGGCAAGCTGCTCCTGGCGTCGTTGGAGACGCCGTCGCCGCCGCTGTGAAGATTGGATAT 179
Query 195 CAGCATATTGATTGTGCTTCAAGATATGGCAATGAAATTGAGATTGGGAAAGTTCTGAAG 254
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 180 CAGCATATTGATTGTGCTTCAAGATATGGCAATGAAATTGAGATCGGGAAAGTTCTGAAG 239
Query 255 AAGTTGTTTGATGATGGCGTAGTGAAGCGTGAGAAGCTGTTCATCACATCAAAAATCTGG 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAGTTGTTTGATGATGGCGTAGTGAAGCGTGAGAAGCTGTTCATCACATCAAAAATCTGG 299
Query 315 TTGACTGATCTTGACCCTCCGGATGTACAGGACGCATTGAACAGAACTCTTCAGGATCTG 374
||||| |||||||| ||||| ||||| || || ||||||||||||||||| |||||||||
Sbjct 300 TTGACAGATCTTGATCCTCCAGATGTGCAAGAGGCATTGAACAGAACTCTACAGGATCTG 359
Query 375 CAGCTTGATTATGTTGATTTGTATCTCATGCACTGGCCTGTTCGGTTGAAGAAAGGTACT 434
||||||||||| || ||| |||||||||||||||||||||||||||||||||| || ||
Sbjct 360 CAGCTTGATTACGTCGATCTGTATCTCATGCACTGGCCTGTTCGGTTGAAGAAGGGCGCT 419
Query 435 GTTGACTTTAAGCCTGAGAACATTATGCCTATCGATATTCCGAGCACATGGAAAGCAATG 494
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 420 GTTGACTTTAAGCCTGAGAACATTATGCCTATCGATATTCCTAGCACATGGAAAGCAATG 479
Query 495 GAAGCACTGGT-TGATTCAGGCAAGGCAAGAGCCATTGGCGTAAGTAATTTCTCTACAAA 553
||||||||| | |||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 480 GAAGCACTG-TATGATTCTGGCAAGACACGAGCCATTGGCGTAAGTAATTTCTCTACAAA 538
Query 554 GAAACTCTCAGATCTTGTGGAGGCTGCTCGTGTTCCTCCCGCTGTAAACCAGGTGGAATG 613
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 539 GAAACTCTCAGATCTTGTGGATACTGCTTGTGTTCCTCCCGCTGTAAACCAGGTGGAATG 598
Query 614 TCATCCTTCATGGCAACAACATAAGCTACATGAGTTTTGCAAGTCCAAAGGGATCCACCT 673
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 599 TCATCCTTCATGGCAACAACATAAGCTACATGAGTTCTGCAAGTCCAAAGGGATACACTT 658
Query 674 CTCAGGATATTCGCCATTGGGATCTCCTGGAACAACGTGGGTGAAGGCCGATGTTTTAAA 733
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 659 GTCAGGATATTCGCCATTGGGTTCTCCTGGAACAACGTGGGTGAAGGCCGATGTTTTAAA 718
Query 734 GAGTCCGGTTATTGAAATGATTGCTAAAGAAATCGGGAAGTCTCCCGCACAAACCGCGCT 793
||||||||||||||||||| |||| |||||| |||||||||| |||||||||||||| ||
Sbjct 719 GAGTCCGGTTATTGAAATGGTTGCAAAAGAACTCGGGAAGTCCCCCGCACAAACCGCTCT 778
Query 794 TCGATGGGGACTTCAAATGGGTCATAGTATACTTCCCAAAAGCACAAATGAAGGA-AGAA 852
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 779 TCGATGGGGACTTCAAATGGGTCATAGTATACTTCCCAAAAGCACAAATGAAA-ATAGAA 837
Query 853 TCAGAGAGAACTTT-GATGTCTTGGGATGGTCTAT-TCCAAAAGAAATGTTTGACAAGTT 910
|||||||||| ||| ||||| ||||||||||| || || | |||||||||||| ||||||
Sbjct 838 TCAGAGAGAA-TTTCGATGTATTGGGATGGTCAATCTC-AGAAGAAATGTTTGTCAAGTT 895
Query 911 TTCCAAGATAGAGCAGGCTAGGTTAGTCCAAGGCACGTCGTTTGTTCATGAGACGTTGAG 970
|||||||||||| |||| |||||||||||||||||| ||||||||||||||||| |||||
Sbjct 896 TTCCAAGATAGAACAGGTTAGGTTAGTCCAAGGCACATCGTTTGTTCATGAGACATTGAG 955
Query 971 TCCTTATAAAACACTTGAAGAGCTTTGGGATGGTGAGATCTGAATCAAAAG 1021
||||||||| ||||||||||||||||||||||||||||| ||||||| |||
Sbjct 956 TCCTTATAAGACACTTGAAGAGCTTTGGGATGGTGAGATATGAATCATAAG 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42202069119
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5