BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53890.1
Length=584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323927 jgi|Araly1|323927|fgenesh1_pm.C_scaffold_5001471 399 8e-111
> Ahg323927 jgi|Araly1|323927|fgenesh1_pm.C_scaffold_5001471
Length=249
Score = 399 bits (216), Expect = 8e-111
Identities = 238/249 (96%), Gaps = 0/249 (0%)
Strand=Plus/Plus
Query 98 ATGGAGAACGACGCAGGTCAGGTCACAGAGCTCTACATTCCAAGGAAATGCTCGGCAACA 157
||||||||||| | ||| || ||||||||||||||||||| || |||||||||||||||
Sbjct 1 ATGGAGAACGAAGAAGGGAAGATCACAGAGCTCTACATTCCGAGAAAATGCTCGGCAACA 60
Query 158 AACAGAATGATCACATCAAAGGATCATGCTTCAGTTCAGCTTAACATTGGTCATCTTGAT 217
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACAGATTGATCACATCAAAGGATCATGCTTCAGTTCAGCTTAACATTGGTCATCTTGAT 120
Query 218 GCTAATGGTCTCTACACTGGCCAATTCACCACTTTTGCTCTCTGCGGATTTGTCCGTGCT 277
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GCTAATGGTGTCTACACTGGCCAATTCACCACCTTTGCTCTCTGCGGATTTGTCCGTGCT 180
Query 278 CAGGGAGACGCAGACAGTGGCGTGGACAGGCTCTGGCAGAAGAAGAAGGTCGAAGCTAAA 337
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 CAGGGAGACGCAGACAGTGGCGTGGACAGGCTCTGGCAGAAGAAGAAGGTCGAAGCCAAA 240
Query 338 CAACAGTGA 346
|||||||||
Sbjct 241 CAACAGTGA 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21367129840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5